Wall clock time and date at job start Tue Mar 31 2020 12:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00052 * 2 1 4 4 H 1.48491 * 109.47298 * 240.00011 * 3 2 1 5 5 H 1.48500 * 109.46787 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47067 * 119.99885 * 3 2 1 7 7 C 1.37881 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99993 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99714 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46672 * 180.02562 * 9 7 2 11 11 N 1.46505 * 109.47012 * 179.97438 * 10 9 7 12 12 C 1.34773 * 120.00060 * 180.02562 * 11 10 9 13 13 O 1.21591 * 120.00198 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99864 * 180.02562 * 12 11 10 15 15 C 1.40068 * 119.99789 * 185.62941 * 14 12 11 16 16 C 1.38858 * 120.04604 * 24.78535 * 15 14 12 17 17 C 1.38094 * 119.95590 * 180.25805 * 16 15 14 18 18 C 1.38494 * 120.04542 * 0.04059 * 17 16 15 19 19 F 1.35098 * 119.95394 * 179.97438 * 18 17 16 20 20 C 1.38445 * 120.08751 * 359.96279 * 18 17 16 21 21 C 1.38138 * 120.04495 * 0.02562 * 20 18 17 22 22 C 1.50698 * 120.02395 * 179.97438 * 21 20 18 23 23 F 1.39907 * 109.47196 * 0.02562 * 22 21 20 24 24 F 1.39910 * 109.47054 * 120.02146 * 22 21 20 25 25 F 1.39899 * 109.47465 * 240.02094 * 22 21 20 26 26 H 0.96993 * 120.00227 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47333 * 60.00575 * 9 7 2 28 28 H 1.08998 * 109.47298 * 299.99804 * 9 7 2 29 29 H 1.09003 * 109.47475 * 60.00544 * 10 9 7 30 30 H 1.09003 * 109.47505 * 300.00068 * 10 9 7 31 31 H 0.97000 * 120.00183 * 0.02562 * 11 10 9 32 32 H 0.96997 * 120.00365 * 5.62115 * 14 12 11 33 33 H 1.08002 * 120.02370 * 0.27890 * 16 15 14 34 34 H 1.08007 * 119.97738 * 180.02562 * 17 16 15 35 35 H 1.07997 * 119.98207 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5128 -4.9308 0.0001 12 6 2.1867 -6.0980 0.0007 13 8 3.4026 -6.0980 0.0003 14 7 1.5128 -7.2652 0.0008 15 6 2.2081 -8.4752 0.1204 16 6 3.4529 -8.5040 0.7350 17 6 4.1391 -9.6971 0.8472 18 6 3.5869 -10.8644 0.3465 19 9 4.2601 -12.0305 0.4568 20 6 2.3460 -10.8378 -0.2667 21 6 1.6562 -9.6464 -0.3807 22 6 0.3057 -9.6179 -1.0487 23 9 -0.0350 -10.9087 -1.4672 24 9 -0.6533 -9.1532 -0.1422 25 9 0.3515 -8.7652 -2.1570 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8720 -3.6044 0.8895 30 1 2.8720 -3.6043 -0.8905 31 1 0.5428 -4.9309 0.0000 32 1 0.5464 -7.2673 -0.0819 33 1 3.8840 -7.5939 1.1253 34 1 5.1072 -9.7200 1.3256 35 1 1.9168 -11.7491 -0.6562 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273123530.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:11 Heat of formation + Delta-G solvation = -202.382536 kcal Electronic energy + Delta-G solvation = -26374.174635 eV Core-core repulsion = 21678.758326 eV Total energy + Delta-G solvation = -4695.416309 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.089 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.52619 -49.16927 -48.04893 -47.94417 -40.89762 -38.91024 -35.34386 -34.78501 -32.96469 -32.39909 -30.35110 -28.97752 -26.44925 -24.96445 -23.53880 -22.50541 -21.20710 -20.92088 -19.31097 -18.90365 -18.82482 -18.21568 -17.81610 -16.66780 -16.44031 -16.32439 -15.90074 -15.55338 -14.99817 -14.88350 -14.81912 -14.58794 -14.39795 -14.34391 -14.11019 -14.09857 -13.81018 -13.76053 -13.53307 -13.28514 -12.85009 -12.76514 -12.34197 -11.66745 -11.30046 -11.10990 -10.73000 -10.71534 -10.42076 -10.17236 -9.72009 -9.66075 -9.36712 -8.80968 -8.48570 -8.29099 -6.15055 -4.18567 0.40995 0.74488 2.24231 2.43404 2.83488 3.27685 3.28875 3.29499 3.32058 3.34988 3.56658 4.02215 4.05455 4.13300 4.33753 4.39270 4.55546 4.81527 4.93447 5.22225 5.23474 5.53471 5.62890 5.88684 6.02393 6.08090 6.23078 6.48241 6.60148 6.69223 6.76349 7.44396 7.52287 7.82435 7.92833 8.20059 8.50169 8.86987 9.46698 10.96474 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.021231 B = 0.002729 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.512709 B =10259.330762 C =11326.475433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.137 3.863 11 N -0.724 5.724 12 C 0.700 3.300 13 O -0.572 6.572 14 N -0.690 5.690 15 C 0.229 3.771 16 C -0.107 4.107 17 C -0.094 4.094 18 C 0.068 3.932 19 F -0.135 7.135 20 C -0.085 4.085 21 C -0.206 4.206 22 C 0.513 3.487 23 F -0.173 7.173 24 F -0.176 7.176 25 F -0.170 7.170 26 H 0.263 0.737 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.398 0.602 32 H 0.409 0.591 33 H 0.172 0.828 34 H 0.148 0.852 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.180 -23.196 0.569 23.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.015 3.985 11 N -0.377 5.377 12 C 0.400 3.600 13 O -0.449 6.449 14 N -0.336 5.336 15 C 0.130 3.870 16 C -0.127 4.127 17 C -0.114 4.114 18 C 0.048 3.952 19 F -0.114 7.114 20 C -0.104 4.104 21 C -0.211 4.211 22 C 0.458 3.542 23 F -0.154 7.154 24 F -0.157 7.157 25 F -0.151 7.151 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.232 0.768 32 H 0.246 0.754 33 H 0.190 0.810 34 H 0.166 0.834 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.084 -22.912 0.558 23.014 hybrid contribution -0.774 0.689 -0.225 1.060 sum 1.310 -22.224 0.333 22.265 Atomic orbital electron populations 1.69935 1.06114 1.27117 1.50038 1.24993 0.94899 0.99453 0.94865 0.86554 0.79513 0.82556 0.78816 1.20064 1.21225 1.20070 1.20977 0.93233 0.90236 1.51827 0.92192 1.19338 0.94215 0.90927 0.98010 1.21769 0.95830 0.79755 1.01165 1.45655 1.10364 1.05090 1.76564 1.15987 0.85655 0.80120 0.78196 1.90874 1.11187 1.85927 1.56960 1.43036 1.10802 1.03786 1.75982 1.17233 0.92970 0.83418 0.93413 1.21477 0.93260 0.99661 0.98311 1.21350 1.00993 0.90582 0.98441 1.17369 0.91846 0.82166 1.03847 1.91520 1.79476 1.45939 1.94453 1.20627 0.93488 0.97740 0.98558 1.19376 0.96542 0.95215 1.09979 1.18093 0.85189 0.73951 0.76934 1.93176 1.93295 1.38314 1.90643 1.93213 1.66750 1.88532 1.67250 1.93274 1.96652 1.70744 1.54410 0.92701 0.95822 0.95827 0.92184 0.92207 0.76829 0.75430 0.81047 0.83386 0.83029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.52 -14.03 9.11 -34.44 -0.31 -14.34 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.14 2.70 5.61 -4.04 -0.02 2.68 16 11 N -0.72 -11.61 5.56 -65.22 -0.36 -11.97 16 12 C 0.70 10.95 8.37 -86.92 -0.73 10.23 16 13 O -0.57 -10.46 13.51 5.29 0.07 -10.39 16 14 N -0.69 -8.54 4.90 -14.21 -0.07 -8.61 16 15 C 0.23 2.71 6.33 -83.65 -0.53 2.18 16 16 C -0.11 -1.23 8.71 -39.40 -0.34 -1.58 16 17 C -0.09 -0.89 10.02 -39.54 -0.40 -1.29 16 18 C 0.07 0.65 7.30 -39.41 -0.29 0.36 16 19 F -0.14 -1.33 17.26 2.25 0.04 -1.29 16 20 C -0.08 -0.78 9.40 -39.54 -0.37 -1.15 16 21 C -0.21 -2.14 5.38 -104.44 -0.56 -2.70 16 22 C 0.51 5.19 2.82 36.00 0.10 5.29 16 23 F -0.17 -1.66 15.97 2.25 0.04 -1.62 16 24 F -0.18 -1.74 15.89 2.25 0.04 -1.70 16 25 F -0.17 -1.92 16.73 2.25 0.04 -1.88 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.40 5.48 8.49 -40.82 -0.35 5.14 16 32 H 0.41 4.29 6.65 -40.82 -0.27 4.02 16 33 H 0.17 2.24 5.80 -52.49 -0.30 1.94 16 34 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.15 1.12 7.15 -52.49 -0.38 0.74 16 LS Contribution 322.35 15.07 4.86 4.86 Total: -1.00 -29.52 322.35 -6.28 -35.80 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -2.95 Total: 4.34 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -3.69 Total: 1.38 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.30 Total: -45.36 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.07 Total: -10.39 kcal Atomic # 9 Polarization: -6.65 SS G_CDS: 0.15 Total: -6.50 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.52 -6.28 -35.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273123530.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.580 kcal (2) G-P(sol) polarization free energy of solvation -29.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds