Wall clock time and date at job start Tue Mar 31 2020 12:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00052 * 2 1 4 4 H 1.48491 * 109.47298 * 240.00011 * 3 2 1 5 5 H 1.48500 * 109.46787 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47067 * 119.99885 * 3 2 1 7 7 C 1.37881 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99993 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99714 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46672 * 180.02562 * 9 7 2 11 11 N 1.46505 * 109.47012 * 179.97438 * 10 9 7 12 12 C 1.34773 * 120.00060 * 180.02562 * 11 10 9 13 13 O 1.21591 * 120.00198 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99864 * 180.02562 * 12 11 10 15 15 C 1.40068 * 119.99789 * 185.62941 * 14 12 11 16 16 C 1.38858 * 120.04604 * 24.78535 * 15 14 12 17 17 C 1.38094 * 119.95590 * 180.25805 * 16 15 14 18 18 C 1.38494 * 120.04542 * 0.04059 * 17 16 15 19 19 F 1.35098 * 119.95394 * 179.97438 * 18 17 16 20 20 C 1.38445 * 120.08751 * 359.96279 * 18 17 16 21 21 C 1.38138 * 120.04495 * 0.02562 * 20 18 17 22 22 C 1.50698 * 120.02395 * 179.97438 * 21 20 18 23 23 F 1.39907 * 109.47196 * 0.02562 * 22 21 20 24 24 F 1.39910 * 109.47054 * 120.02146 * 22 21 20 25 25 F 1.39899 * 109.47465 * 240.02094 * 22 21 20 26 26 H 0.96993 * 120.00227 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47333 * 60.00575 * 9 7 2 28 28 H 1.08998 * 109.47298 * 299.99804 * 9 7 2 29 29 H 1.09003 * 109.47475 * 60.00544 * 10 9 7 30 30 H 1.09003 * 109.47505 * 300.00068 * 10 9 7 31 31 H 0.97000 * 120.00183 * 0.02562 * 11 10 9 32 32 H 0.96997 * 120.00365 * 5.62115 * 14 12 11 33 33 H 1.08002 * 120.02370 * 0.27890 * 16 15 14 34 34 H 1.08007 * 119.97738 * 180.02562 * 17 16 15 35 35 H 1.07997 * 119.98207 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5128 -4.9308 0.0001 12 6 2.1867 -6.0980 0.0007 13 8 3.4026 -6.0980 0.0003 14 7 1.5128 -7.2652 0.0008 15 6 2.2081 -8.4752 0.1204 16 6 3.4529 -8.5040 0.7350 17 6 4.1391 -9.6971 0.8472 18 6 3.5869 -10.8644 0.3465 19 9 4.2601 -12.0305 0.4568 20 6 2.3460 -10.8378 -0.2667 21 6 1.6562 -9.6464 -0.3807 22 6 0.3057 -9.6179 -1.0487 23 9 -0.0350 -10.9087 -1.4672 24 9 -0.6533 -9.1532 -0.1422 25 9 0.3515 -8.7652 -2.1570 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8720 -3.6044 0.8895 30 1 2.8720 -3.6043 -0.8905 31 1 0.5428 -4.9309 0.0000 32 1 0.5464 -7.2673 -0.0819 33 1 3.8840 -7.5939 1.1253 34 1 5.1072 -9.7200 1.3256 35 1 1.9168 -11.7491 -0.6562 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273123530.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:11 Heat of formation + Delta-G solvation = -219.684729 kcal Electronic energy + Delta-G solvation = -26374.924915 eV Core-core repulsion = 21678.758326 eV Total energy + Delta-G solvation = -4696.166589 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.089 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.33885 -49.94871 -48.83707 -48.78306 -41.98564 -39.93996 -36.80729 -35.95107 -34.85716 -33.22411 -31.85473 -30.20062 -27.34038 -26.67513 -24.59218 -23.42363 -22.82894 -22.15509 -20.26814 -19.74530 -19.64239 -19.30317 -18.81204 -18.39856 -17.47418 -17.24307 -16.80044 -16.63490 -16.49983 -16.30801 -15.73391 -15.68329 -15.33154 -15.27118 -15.19575 -15.07238 -14.91839 -14.84709 -14.47204 -14.26621 -14.19080 -13.86056 -13.57079 -13.23020 -12.92826 -12.55030 -12.48181 -12.26326 -11.74746 -11.63413 -11.47837 -11.22175 -10.59518 -10.51223 -10.15815 -9.25846 -8.23159 -6.33324 -0.40777 -0.08756 1.28149 1.43790 1.45369 1.45490 1.53712 1.78527 2.27541 2.41220 2.48294 2.75398 2.98761 3.12312 3.22632 3.23804 3.54923 3.81192 4.00899 4.03849 4.40490 4.45898 4.51900 4.76151 4.81572 4.86444 4.99670 5.13627 5.22187 5.46130 5.59531 5.61819 5.65830 5.80806 6.16281 6.73505 6.80859 7.25037 7.36169 8.88496 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.021231 B = 0.002729 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.512709 B =10259.330762 C =11326.475433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.022 3.978 10 C 0.159 3.841 11 N -0.722 5.722 12 C 0.704 3.296 13 O -0.599 6.599 14 N -0.678 5.678 15 C 0.209 3.791 16 C -0.119 4.119 17 C -0.085 4.085 18 C 0.071 3.929 19 F -0.134 7.134 20 C -0.077 4.077 21 C -0.203 4.203 22 C 0.516 3.484 23 F -0.167 7.167 24 F -0.174 7.174 25 F -0.177 7.177 26 H 0.265 0.735 27 H 0.008 0.992 28 H 0.010 0.990 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.409 0.591 32 H 0.418 0.582 33 H 0.155 0.845 34 H 0.170 0.830 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.753 -24.365 0.577 24.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.080 0.920 9 C -0.016 4.016 10 C 0.035 3.965 11 N -0.375 5.375 12 C 0.405 3.595 13 O -0.478 6.478 14 N -0.326 5.326 15 C 0.111 3.889 16 C -0.139 4.139 17 C -0.104 4.104 18 C 0.051 3.949 19 F -0.112 7.112 20 C -0.096 4.096 21 C -0.208 4.208 22 C 0.461 3.539 23 F -0.149 7.149 24 F -0.156 7.156 25 F -0.159 7.159 26 H 0.074 0.926 27 H 0.027 0.973 28 H 0.028 0.972 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.245 0.755 32 H 0.256 0.744 33 H 0.173 0.827 34 H 0.188 0.812 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.635 -24.135 0.568 24.285 hybrid contribution -0.948 0.907 -0.220 1.330 sum 1.687 -23.228 0.348 23.292 Atomic orbital electron populations 1.70045 1.07563 1.28043 1.51022 1.25855 0.95747 1.03071 0.94477 0.85521 0.78297 0.78216 0.79167 1.19347 1.20866 1.19244 1.21441 0.93724 0.91767 1.51496 0.91966 1.19146 0.94315 0.91656 0.96477 1.21226 0.94634 0.80137 1.00503 1.45321 1.10798 1.04334 1.77090 1.15943 0.85272 0.80561 0.77755 1.90864 1.12435 1.86450 1.58068 1.42760 1.11147 1.03107 1.75543 1.17395 0.93460 0.83383 0.94704 1.21357 0.93564 0.99857 0.99154 1.21515 1.01534 0.89753 0.97597 1.17404 0.91885 0.82130 1.03528 1.91533 1.79460 1.45818 1.94406 1.20857 0.93139 0.98031 0.97566 1.19371 0.96654 0.95008 1.09751 1.18035 0.85139 0.74019 0.76686 1.93188 1.93243 1.37857 1.90580 1.93219 1.66674 1.88537 1.67148 1.93262 1.96687 1.71071 1.54855 0.92591 0.97340 0.97174 0.92670 0.93042 0.75512 0.74372 0.82734 0.81210 0.80927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.40 13.29 21.45 0.28 -53.11 16 2 C 0.01 0.40 5.46 84.66 0.46 0.86 16 3 Si 0.96 42.63 29.54 68.60 2.03 44.65 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.55 -29.42 9.11 25.60 0.23 -29.19 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 9 C 0.02 1.04 5.09 29.85 0.15 1.19 16 10 C 0.16 6.32 5.61 86.38 0.48 6.81 16 11 N -0.72 -23.15 5.56 -478.51 -2.66 -25.81 16 12 C 0.70 21.93 8.37 179.06 1.50 23.43 16 13 O -0.60 -21.98 13.51 -4.00 -0.05 -22.04 16 14 N -0.68 -16.42 4.90 -317.12 -1.55 -17.97 16 15 C 0.21 4.74 6.33 38.11 0.24 4.98 16 16 C -0.12 -2.66 8.71 22.38 0.19 -2.46 16 17 C -0.08 -1.46 10.02 22.30 0.22 -1.24 16 18 C 0.07 1.19 7.30 22.38 0.16 1.35 16 19 F -0.13 -2.28 17.26 44.97 0.78 -1.50 16 20 C -0.08 -1.23 9.40 22.30 0.21 -1.02 16 21 C -0.20 -3.87 5.38 -19.75 -0.11 -3.97 16 22 C 0.52 9.60 2.82 71.24 0.20 9.80 16 23 F -0.17 -2.85 15.97 44.97 0.72 -2.14 16 24 F -0.17 -3.19 15.89 44.97 0.71 -2.48 16 25 F -0.18 -3.81 16.73 44.97 0.75 -3.05 16 26 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 27 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.41 11.23 8.49 -92.71 -0.79 10.44 16 32 H 0.42 8.44 6.65 -92.71 -0.62 7.82 16 33 H 0.16 4.07 5.80 -2.91 -0.02 4.05 16 34 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.17 2.02 7.15 -2.91 -0.02 2.00 16 Total: -1.00 -62.24 322.35 4.75 -57.49 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -0.22 Total: 15.41 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 3.96 Total: 10.54 kcal Atomic # 7 Polarization: -92.96 SS G_CDS: -3.93 Total: -96.89 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.05 Total: -22.04 kcal Atomic # 9 Polarization: -12.13 SS G_CDS: 2.96 Total: -9.17 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Total: -62.24 4.75 -57.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273123530.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.191 kcal (2) G-P(sol) polarization free energy of solvation -62.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds