Wall clock time and date at job start Tue Mar 31 2020 12:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99764 * 2 1 4 4 H 1.48500 * 109.46988 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47165 * 300.00183 * 3 2 1 6 6 H 1.48506 * 109.47049 * 60.00410 * 3 2 1 7 7 C 1.37873 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99476 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00273 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.46847 * 185.00439 * 9 7 2 11 11 C 1.46504 * 120.00050 * 95.50912 * 10 9 7 12 12 C 1.50706 * 109.46831 * 269.99615 * 11 10 9 13 13 C 1.38671 * 120.41837 * 89.99332 * 12 11 10 14 14 C 1.38634 * 118.42018 * 179.97438 * 13 12 11 15 15 C 1.38222 * 119.15823 * 0.25750 * 14 13 12 16 16 N 1.31857 * 120.76492 * 359.49757 * 15 14 13 17 17 C 1.31882 * 121.72709 * 0.49338 * 16 15 14 18 18 C 1.34774 * 120.00374 * 275.50080 * 10 9 7 19 19 O 1.21289 * 120.00312 * 175.31308 * 18 10 9 20 20 C 1.50697 * 119.99948 * 355.31314 * 18 10 9 21 21 H 1.08998 * 109.47323 * 15.13434 * 20 18 10 22 22 F 1.39904 * 109.47539 * 135.13530 * 20 18 10 23 23 C 1.53003 * 109.47290 * 255.13661 * 20 18 10 24 24 F 1.39901 * 109.47091 * 55.01490 * 23 20 18 25 25 F 1.39896 * 109.47399 * 175.01010 * 23 20 18 26 26 F 1.39897 * 109.46984 * 295.01362 * 23 20 18 27 27 H 0.97003 * 120.00449 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.46696 * 65.00960 * 9 7 2 29 29 H 1.08992 * 109.46889 * 305.00589 * 9 7 2 30 30 H 1.08994 * 109.47729 * 149.99895 * 11 10 9 31 31 H 1.08997 * 109.46830 * 29.98961 * 11 10 9 32 32 H 1.08001 * 120.78967 * 359.96559 * 13 12 11 33 33 H 1.07993 * 120.41946 * 179.97438 * 14 13 12 34 34 H 1.08000 * 119.61530 * 179.74114 * 15 14 13 35 35 H 1.07999 * 119.61738 * 179.75474 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.1985 -3.6100 0.1193 11 6 2.4850 -4.1899 1.4339 12 6 3.6464 -3.4628 2.0613 13 6 3.4294 -2.3502 2.8601 14 6 4.5277 -1.7133 3.4169 15 6 5.7939 -2.2019 3.1548 16 7 5.9623 -3.2656 2.3940 17 6 4.9409 -3.8966 1.8482 18 6 2.8067 -4.0986 -0.9797 19 8 3.6537 -4.9600 -0.8717 20 6 2.4343 -3.5747 -2.3427 21 1 1.8755 -2.6452 -2.2345 22 9 3.5964 -3.3366 -3.0844 23 6 1.5695 -4.6081 -3.0675 24 9 0.4640 -4.9307 -2.2730 25 9 1.1297 -4.0768 -4.2847 26 9 2.3239 -5.7615 -3.3075 27 1 -0.4851 0.8400 0.0004 28 1 0.6930 -2.5965 -0.9318 29 1 0.5592 -2.5192 0.8414 30 1 2.7358 -5.2443 1.3191 31 1 1.6074 -4.0925 2.0729 32 1 2.4285 -1.9883 3.0439 33 1 4.3960 -0.8438 4.0436 34 1 6.6550 -1.7090 3.5814 35 1 5.1184 -4.7624 1.2274 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277705239.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:08 Heat of formation + Delta-G solvation = -195.102186 kcal Electronic energy + Delta-G solvation = -28279.721547 eV Core-core repulsion = 23584.620937 eV Total energy + Delta-G solvation = -4695.100610 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.089 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.15894 -48.05237 -47.56172 -47.33334 -40.07061 -39.04969 -35.64758 -33.20365 -32.31706 -31.52582 -30.36983 -27.83754 -26.20922 -24.00636 -23.31659 -22.99717 -21.80908 -19.65370 -18.70574 -18.43646 -17.87902 -17.11938 -16.85949 -16.71411 -16.19277 -15.79077 -15.18128 -15.03147 -14.78024 -14.39468 -14.28980 -14.26647 -13.95744 -13.85970 -13.82687 -13.66384 -13.65692 -13.24174 -12.90469 -12.66483 -12.61122 -12.28750 -12.17961 -11.81947 -11.29415 -11.19726 -11.14056 -10.87260 -10.42570 -10.00952 -9.64416 -9.36816 -9.13574 -8.81330 -8.66871 -8.16771 -6.41469 -4.51045 1.40281 1.68824 2.20834 2.79034 3.08809 3.19494 3.20986 3.26189 3.59902 4.01909 4.07015 4.15996 4.25915 4.61979 4.77342 4.89023 4.93146 5.11203 5.14589 5.20578 5.31566 5.42643 5.63025 5.84397 5.97947 6.12357 6.28513 6.50022 6.66248 6.75825 7.05920 7.06608 7.53097 7.73644 7.74905 8.26091 8.30728 8.60233 9.19558 10.64897 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.010701 B = 0.006699 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.937929 B = 4178.686788 C = 5788.505024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.072 3.928 3 Si 0.893 3.107 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.227 3.773 10 N -0.573 5.573 11 C 0.165 3.835 12 C -0.148 4.148 13 C -0.034 4.034 14 C -0.181 4.181 15 C 0.091 3.909 16 N -0.495 5.495 17 C 0.116 3.884 18 C 0.500 3.500 19 O -0.527 6.527 20 C 0.034 3.966 21 H 0.168 0.832 22 F -0.158 7.158 23 C 0.444 3.556 24 F -0.166 7.166 25 F -0.170 7.170 26 F -0.166 7.166 27 H 0.268 0.732 28 H 0.034 0.966 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.138 0.862 33 H 0.130 0.870 34 H 0.148 0.852 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.201 -5.204 1.922 5.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.132 4.132 3 Si 0.720 3.280 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.108 3.892 10 N -0.303 5.303 11 C 0.042 3.958 12 C -0.151 4.151 13 C -0.060 4.060 14 C -0.201 4.201 15 C -0.066 4.066 16 N -0.204 5.204 17 C -0.041 4.041 18 C 0.283 3.717 19 O -0.404 6.404 20 C -0.006 4.006 21 H 0.185 0.815 22 F -0.139 7.139 23 C 0.388 3.612 24 F -0.147 7.147 25 F -0.152 7.152 26 F -0.148 7.148 27 H 0.078 0.922 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.156 0.844 33 H 0.147 0.853 34 H 0.165 0.835 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.305 -5.858 1.805 6.549 hybrid contribution -0.594 1.557 -0.119 1.671 sum 1.712 -4.301 1.685 4.927 Atomic orbital electron populations 1.69912 1.05965 1.27688 1.48580 1.24900 0.94807 0.99329 0.94209 0.86496 0.80389 0.83100 0.78047 1.19470 1.20567 1.20623 1.21468 0.93718 0.89937 1.53363 0.91770 1.19720 0.87642 0.82673 0.99138 1.48270 1.42823 1.34682 1.04535 1.20249 0.95506 0.96703 0.83340 1.21146 0.96621 0.98224 0.99110 1.21527 0.99883 0.92210 0.92391 1.22072 0.93858 1.01544 1.02609 1.22665 0.96462 0.92713 0.94725 1.67685 1.35252 1.08461 1.08984 1.22771 0.87703 0.98406 0.95194 1.19871 0.83086 0.83111 0.85649 1.90700 1.31428 1.31948 1.86339 1.22947 0.85746 1.01838 0.90096 0.81512 1.92948 1.49045 1.95219 1.76666 1.20587 0.79937 0.82376 0.78264 1.93242 1.54728 1.93227 1.73514 1.93229 1.90116 1.86026 1.45802 1.93254 1.75569 1.51423 1.94510 0.92210 0.94812 0.92864 0.89426 0.89033 0.84422 0.85253 0.83484 0.82707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.05 13.29 55.43 0.74 -21.31 16 2 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 19.33 29.54 -169.99 -5.02 14.31 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.55 -12.60 8.92 -34.44 -0.31 -12.91 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.23 4.65 4.83 -5.19 -0.03 4.62 16 10 N -0.57 -10.59 2.45 -176.44 -0.43 -11.02 16 11 C 0.17 2.62 5.56 -5.19 -0.03 2.59 16 12 C -0.15 -2.47 5.48 -104.48 -0.57 -3.04 16 13 C -0.03 -0.54 9.85 -39.28 -0.39 -0.93 16 14 C -0.18 -2.67 10.11 -39.44 -0.40 -3.07 16 15 C 0.09 1.39 11.18 -17.55 -0.20 1.19 16 16 N -0.50 -8.68 10.36 -13.25 -0.14 -8.82 16 17 C 0.12 2.04 10.77 -17.55 -0.19 1.85 16 18 C 0.50 9.65 6.28 -10.99 -0.07 9.58 16 19 O -0.53 -10.90 15.62 5.55 0.09 -10.81 16 20 C 0.03 0.62 3.23 -27.88 -0.09 0.53 16 21 H 0.17 3.04 5.47 -51.93 -0.28 2.75 16 22 F -0.16 -3.01 16.92 2.25 0.04 -2.97 16 23 C 0.44 7.38 2.92 37.16 0.11 7.49 16 24 F -0.17 -2.70 16.90 2.25 0.04 -2.66 16 25 F -0.17 -2.70 17.32 2.25 0.04 -2.66 16 26 F -0.17 -2.86 16.83 2.25 0.04 -2.82 16 27 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 28 H 0.03 0.71 6.34 -51.93 -0.33 0.38 16 29 H 0.05 1.12 7.83 -51.93 -0.41 0.71 16 30 H 0.09 1.31 7.44 -51.93 -0.39 0.92 16 31 H 0.09 1.26 7.81 -51.93 -0.41 0.85 16 32 H 0.14 2.14 8.06 -52.49 -0.42 1.72 16 33 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 34 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.16 2.71 7.42 -52.49 -0.39 2.32 16 LS Contribution 327.74 15.07 4.94 4.94 Total: -1.00 -26.84 327.74 -4.94 -31.78 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -3.01 Total: 2.51 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: -2.25 Total: 9.54 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.17 Total: -41.15 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 9 Polarization: -11.27 SS G_CDS: 0.15 Total: -11.12 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -26.84 -4.94 -31.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277705239.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.319 kcal (2) G-P(sol) polarization free energy of solvation -26.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds