Wall clock time and date at job start Tue Mar 31 2020 12:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.46635 * 2 1 4 4 N 1.46501 * 109.46667 * 240.00090 * 2 1 3 5 5 S 1.65599 * 119.99718 * 95.00160 * 4 2 1 6 6 O 1.42102 * 104.27453 * 181.06699 * 5 4 2 7 7 O 1.42094 * 104.27800 * 308.92157 * 5 4 2 8 8 C 1.81396 * 104.45246 * 64.99523 * 5 4 2 9 9 C 1.53004 * 109.47012 * 179.97438 * 8 5 4 10 10 C 1.50703 * 109.46789 * 179.97438 * 9 8 5 11 11 H 1.07994 * 120.00670 * 0.02562 * 10 9 8 12 12 C 1.37886 * 119.99599 * 180.02562 * 10 9 8 13 13 N 1.31506 * 120.00023 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99633 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47335 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46798 * 120.00248 * 14 12 10 17 17 H 1.48498 * 109.46970 * 240.00004 * 14 12 10 18 18 C 1.50695 * 109.47181 * 119.99902 * 2 1 3 19 19 C 1.38813 * 120.80886 * 254.99611 * 18 2 1 20 20 F 1.35104 * 120.43177 * 0.03145 * 19 18 2 21 21 C 1.38460 * 119.14250 * 180.29980 * 19 18 2 22 22 N 1.31853 * 120.77555 * 359.40591 * 21 19 18 23 23 C 1.31847 * 121.77595 * 0.63868 * 22 21 19 24 24 C 1.38454 * 120.78027 * 359.65164 * 23 22 21 25 25 F 1.35106 * 120.42612 * 180.02562 * 24 23 22 26 26 H 1.09005 * 109.46635 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47096 * 299.99803 * 1 2 3 28 28 H 1.08999 * 109.47500 * 59.99883 * 1 2 3 29 29 H 0.97000 * 119.99916 * 274.99464 * 4 2 1 30 30 H 1.08994 * 109.47024 * 299.99665 * 8 5 4 31 31 H 1.08998 * 109.46964 * 60.00094 * 8 5 4 32 32 H 1.08994 * 109.47317 * 299.99933 * 9 8 5 33 33 H 1.08998 * 109.46814 * 60.00450 * 9 8 5 34 34 H 0.97009 * 119.99998 * 180.02562 * 13 12 10 35 35 H 1.07994 * 119.61185 * 179.70711 * 21 19 18 36 36 H 1.08001 * 119.60826 * 179.67419 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 16 2.4121 0.1772 -2.5505 6 8 2.8121 -0.8075 -3.4937 7 8 1.2750 0.9966 -2.7846 8 6 3.8312 1.1873 -2.0441 9 6 4.2939 2.0445 -3.2240 10 6 5.4725 2.8841 -2.8031 11 1 5.8537 2.8132 -1.7952 12 6 6.0642 3.7430 -3.7050 13 7 5.5998 3.8298 -4.9323 14 14 7.5256 4.7832 -3.1835 15 1 7.8517 4.5015 -1.7625 16 1 8.6969 4.4531 -4.0346 17 1 7.1901 6.2214 -3.3393 18 6 2.0324 -0.7104 1.2304 19 6 2.5604 0.0033 2.2976 20 9 2.6322 1.3516 2.2506 21 6 3.0177 -0.6850 3.4086 22 7 2.9451 -2.0003 3.4645 23 6 2.4506 -2.7112 2.4703 24 6 1.9790 -2.0943 1.3241 25 9 1.4733 -2.8298 0.3098 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 2.1110 -1.6562 -1.1949 30 1 3.5398 1.8343 -1.2168 31 1 4.6458 0.5363 -1.7269 32 1 4.5854 1.3973 -4.0511 33 1 3.4795 2.6955 -3.5416 34 1 6.0164 4.4337 -5.5670 35 1 3.4343 -0.1377 4.2412 36 1 2.4127 -3.7875 2.5512 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285346609.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:33 Heat of formation + Delta-G solvation = -158.407444 kcal Electronic energy + Delta-G solvation = -25172.267110 eV Core-core repulsion = 21032.598090 eV Total energy + Delta-G solvation = -4139.669020 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.079 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.30607 -50.20355 -41.18097 -38.38789 -37.80631 -37.07189 -35.92671 -33.21645 -33.16849 -31.79140 -30.53575 -27.63822 -25.92736 -24.72445 -23.65525 -22.94446 -20.65753 -19.51745 -19.29340 -18.87233 -18.63356 -17.90430 -17.38312 -17.09040 -17.01625 -16.89822 -16.57868 -16.51958 -16.10079 -15.66011 -15.18790 -14.85576 -14.67374 -14.60862 -14.44318 -14.21518 -13.77437 -13.63151 -13.32569 -13.28459 -13.19161 -12.97835 -12.83192 -12.73233 -12.47618 -12.26663 -12.14244 -11.79679 -11.35776 -10.98718 -10.88076 -10.66729 -10.59129 -10.05846 -8.27402 -6.41324 -0.82150 -0.40105 -0.38146 1.40612 1.40915 1.54224 1.67194 2.28255 2.36985 2.54648 2.66705 2.86647 2.97305 3.06415 3.15937 3.29895 3.40423 3.75710 3.85620 3.93322 4.01665 4.08253 4.20544 4.39077 4.44239 4.66802 4.70132 4.74101 4.95567 5.19498 5.23764 5.24958 5.36889 5.66838 5.85484 6.04328 6.50158 6.72124 7.29037 8.85091 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.014779 B = 0.004164 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.120650 B = 6721.883344 C = 7823.628456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.183 3.817 3 H 0.108 0.892 4 N -1.108 6.108 5 S 2.618 3.382 6 O -0.993 6.993 7 O -0.984 6.984 8 C -0.589 4.589 9 C 0.021 3.979 10 C -0.539 4.539 11 H 0.075 0.925 12 C -0.002 4.002 13 N -0.933 5.933 14 Si 0.973 3.027 15 H -0.256 1.256 16 H -0.278 1.278 17 H -0.277 1.277 18 C -0.124 4.124 19 C 0.081 3.919 20 F -0.120 7.120 21 C 0.078 3.922 22 N -0.440 5.440 23 C 0.078 3.922 24 C 0.081 3.919 25 F -0.117 7.117 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.423 0.577 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.007 0.993 33 H 0.010 0.990 34 H 0.268 0.732 35 H 0.205 0.795 36 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.969 -11.995 20.020 24.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.076 3.924 3 H 0.126 0.874 4 N -0.870 5.870 5 S 2.714 3.286 6 O -0.984 6.984 7 O -0.974 6.974 8 C -0.722 4.722 9 C -0.018 4.018 10 C -0.578 4.578 11 H 0.093 0.907 12 C -0.201 4.201 13 N -0.573 5.573 14 Si 0.797 3.203 15 H -0.180 1.180 16 H -0.204 1.204 17 H -0.203 1.203 18 C -0.135 4.135 19 C 0.059 3.941 20 F -0.098 7.098 21 C -0.080 4.080 22 N -0.147 5.147 23 C -0.080 4.080 24 C 0.059 3.941 25 F -0.096 7.096 26 H 0.092 0.908 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.261 0.739 30 H 0.159 0.841 31 H 0.159 0.841 32 H 0.026 0.974 33 H 0.029 0.971 34 H 0.076 0.924 35 H 0.221 0.779 36 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -8.172 -12.219 19.720 24.596 hybrid contribution 0.707 1.002 -0.985 1.573 sum -7.466 -11.217 18.736 23.078 Atomic orbital electron populations 1.22323 0.91897 1.04020 1.04305 1.19716 0.96526 0.95818 0.80364 0.87412 1.55702 1.82144 1.20157 1.28989 1.04646 0.76355 0.74361 0.73208 1.93516 1.84954 1.59362 1.60529 1.93516 1.48601 1.71062 1.84178 1.30359 1.18299 1.13607 1.09885 1.18825 0.97358 0.94289 0.91308 1.21520 1.14503 1.23089 0.98647 0.90714 1.26091 1.00726 0.98443 0.94792 1.70101 1.42914 1.38668 1.05590 0.85276 0.78053 0.77987 0.79015 1.17992 1.20389 1.20269 1.20663 1.01895 0.93738 0.97212 1.18538 1.01284 0.78394 0.95890 1.91589 1.93906 1.27922 1.96403 1.23469 0.97131 0.90300 0.97118 1.67914 1.12610 1.06884 1.27285 1.23472 0.94748 1.03033 0.86786 1.18495 0.99796 0.87853 0.87932 1.91480 1.84501 1.76019 1.57590 0.90841 0.89220 0.91063 0.73853 0.84092 0.84100 0.97436 0.97141 0.92355 0.77869 0.77803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.34 9.46 71.98 0.68 -2.66 16 2 C 0.18 4.02 2.72 44.25 0.12 4.14 16 3 H 0.11 2.35 6.39 -2.38 -0.02 2.33 16 4 N -1.11 -28.48 5.27 -172.51 -0.91 -29.39 16 5 S 2.62 93.20 5.38 -56.49 -0.30 92.89 16 6 O -0.99 -41.71 18.08 -127.65 -2.31 -44.02 16 7 O -0.98 -39.86 17.11 -127.65 -2.18 -42.05 16 8 C -0.59 -22.18 5.90 71.98 0.42 -21.76 16 9 C 0.02 1.10 4.98 29.85 0.15 1.25 16 10 C -0.54 -29.70 9.11 25.60 0.23 -29.47 16 11 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 12 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 13 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 14 Si 0.97 43.07 29.54 68.60 2.03 45.10 16 15 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 16 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 17 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 18 C -0.12 -2.26 4.97 -19.59 -0.10 -2.36 16 19 C 0.08 1.35 7.29 22.46 0.16 1.52 16 20 F -0.12 -2.25 16.40 44.97 0.74 -1.51 16 21 C 0.08 1.04 11.17 84.74 0.95 1.98 16 22 N -0.44 -6.35 10.36 -195.48 -2.02 -8.37 16 23 C 0.08 0.99 11.17 84.74 0.95 1.93 16 24 C 0.08 1.30 6.99 22.46 0.16 1.46 16 25 F -0.12 -2.00 14.42 44.97 0.65 -1.36 16 26 H 0.07 1.33 7.81 -2.38 -0.02 1.31 16 27 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 1.71 7.42 -2.39 -0.02 1.70 16 29 H 0.42 9.72 6.28 -96.74 -0.61 9.11 16 30 H 0.14 4.60 7.44 -2.39 -0.02 4.58 16 31 H 0.14 4.70 8.14 -2.39 -0.02 4.68 16 32 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.01 0.57 8.14 -2.39 -0.02 0.56 16 34 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 35 H 0.20 1.52 8.06 -2.91 -0.02 1.50 16 36 H 0.21 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -74.75 330.46 0.68 -74.06 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.53 Total: 14.47 kcal Atomic # 6 Polarization: -47.80 SS G_CDS: 4.19 Total: -43.61 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -2.65 Total: -93.98 kcal Atomic # 8 Polarization: -81.57 SS G_CDS: -4.49 Total: -86.06 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 1.39 Total: -2.87 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: 93.20 SS G_CDS: -0.30 Total: 92.89 kcal Total: -74.75 0.68 -74.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285346609.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.343 kcal (2) G-P(sol) polarization free energy of solvation -74.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds