Wall clock time and date at job start Tue Mar 31 2020 12:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81400 * 102.99932 * 2 1 4 4 C 1.50696 * 109.47126 * 180.02562 * 3 2 1 5 5 C 1.33628 * 126.03755 * 89.99921 * 4 3 2 6 6 N 1.31787 * 114.50169 * 179.97438 * 5 4 3 7 7 C 1.29029 * 117.12038 * 0.02562 * 6 5 4 8 8 C 1.50707 * 124.91614 * 179.97438 * 7 6 5 9 9 N 1.46495 * 109.47011 * 90.01850 * 8 7 6 10 10 C 1.38864 * 119.99605 * 180.02562 * 9 8 7 11 11 C 1.39565 * 119.84138 * 359.72655 * 10 9 8 12 12 C 1.36343 * 120.15558 * 179.72496 * 11 10 9 13 13 C 1.40888 * 119.83894 * 0.54427 * 12 11 10 14 14 C 1.41137 * 120.15598 * 179.70372 * 13 12 11 15 15 H 1.08001 * 119.99924 * 155.11840 * 14 13 12 16 16 C 1.39864 * 119.99862 * 335.11100 * 14 13 12 17 17 N 1.30900 * 120.00290 * 342.13242 * 16 14 13 18 18 Si 1.86803 * 119.99906 * 162.13161 * 16 14 13 19 19 H 1.48495 * 109.47361 * 94.65496 * 18 16 14 20 20 H 1.48499 * 109.46879 * 214.65575 * 18 16 14 21 21 H 1.48508 * 109.46781 * 334.65246 * 18 16 14 22 22 C 1.40891 * 119.68598 * 359.73190 * 13 12 11 23 23 C 1.36334 * 119.83826 * 359.97438 * 22 13 12 24 24 S 1.70974 * 110.16844 * 0.22046 * 7 6 5 25 25 H 1.09005 * 109.46874 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47440 * 299.99671 * 1 2 3 27 27 H 1.09000 * 109.47133 * 60.00432 * 1 2 3 28 28 H 1.09007 * 109.46893 * 59.99547 * 3 2 1 29 29 H 1.09003 * 109.47025 * 300.00277 * 3 2 1 30 30 H 1.07999 * 122.75656 * 0.02562 * 5 4 3 31 31 H 1.08998 * 109.46728 * 330.02152 * 8 7 6 32 32 H 1.08993 * 109.46898 * 210.02155 * 8 7 6 33 33 H 0.96996 * 120.00438 * 0.02562 * 9 8 7 34 34 H 1.07996 * 119.92265 * 359.97438 * 11 10 9 35 35 H 1.08003 * 120.07955 * 180.27628 * 12 11 10 36 36 H 0.96999 * 120.00537 * 179.97438 * 17 16 14 37 37 H 1.07999 * 120.07495 * 179.97438 * 22 13 12 38 38 H 1.08003 * 119.91901 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9374 -0.0006 5 6 4.5001 2.0261 -1.0815 6 7 5.7832 2.1721 -0.8185 7 6 6.1282 2.2110 0.4242 8 6 7.5414 2.3713 0.9225 9 7 7.8435 3.7956 1.0846 10 6 9.0953 4.1928 1.5356 11 6 10.0612 3.2322 1.8389 12 6 11.2943 3.6152 2.2769 13 6 11.5884 4.9841 2.4340 14 6 12.8605 5.3879 2.8929 15 1 13.2370 6.3696 2.6462 16 6 13.6335 4.5166 3.6672 17 7 13.0717 3.4928 4.2584 18 14 15.4679 4.8142 3.8578 19 1 15.7176 5.5859 5.1016 20 1 16.1754 3.5108 3.9335 21 1 15.9687 5.5822 2.6896 22 6 10.6063 5.9480 2.1314 23 6 9.3796 5.5507 1.6886 24 16 4.7507 2.0476 1.4237 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8031 2.2371 0.8900 29 1 1.8031 2.2371 -0.8900 30 1 4.1115 1.9825 -2.0882 31 1 8.2324 1.9330 0.2024 32 1 7.6478 1.8657 1.8822 33 1 7.1691 4.4611 0.8769 34 1 9.8328 2.1831 1.7226 35 1 12.0423 2.8710 2.5070 36 1 13.6078 2.8883 4.7951 37 1 10.8249 6.9990 2.2499 38 1 8.6257 6.2884 1.4567 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293658304.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:48 Heat of formation + Delta-G solvation = 67.143978 kcal Electronic energy + Delta-G solvation = -20204.036342 eV Core-core repulsion = 17071.130367 eV Total energy + Delta-G solvation = -3132.905975 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 320.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.94473 -37.95925 -35.33610 -33.46724 -32.60018 -29.83877 -29.47074 -29.34227 -27.77539 -25.71726 -24.20065 -23.40799 -21.16441 -20.15851 -19.49530 -18.33120 -17.21097 -16.75963 -16.30962 -15.66720 -15.10065 -14.86533 -14.76962 -14.49032 -14.32833 -13.96385 -13.82103 -13.44073 -13.32114 -13.04239 -12.69241 -12.56080 -12.39455 -11.88516 -11.68480 -11.50205 -11.26963 -11.01740 -10.85107 -10.61796 -10.47929 -9.76810 -9.72212 -9.42103 -9.32878 -9.24826 -9.00926 -8.57821 -8.14753 -7.50388 -6.65188 -6.42874 -4.04340 0.19795 1.05245 1.37782 1.54501 2.08826 2.67891 2.90996 3.09678 3.15654 3.20578 3.34357 3.90679 4.05842 4.27405 4.42521 4.44266 4.65377 4.67741 4.76009 4.88983 4.95290 5.22419 5.31355 5.57860 5.78174 5.84891 5.95143 6.25699 6.29967 6.85798 6.92472 7.19015 7.34694 7.51051 7.55299 7.67766 7.81418 8.14615 8.25211 8.44780 8.63045 8.77285 9.05686 9.13815 10.36972 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.042427 B = 0.002022 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.800098 B =13846.832457 C =14107.233209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.249 6.249 3 C -0.003 4.003 4 C -0.231 4.231 5 C 0.063 3.937 6 N -0.461 5.461 7 C 0.049 3.951 8 C 0.214 3.786 9 N -0.754 5.754 10 C 0.090 3.910 11 C -0.162 4.162 12 C -0.124 4.124 13 C 0.076 3.924 14 C -0.466 4.466 15 H 0.073 0.927 16 C 0.075 3.925 17 N -0.807 5.807 18 Si 0.902 3.098 19 H -0.273 1.273 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.187 4.187 23 C -0.153 4.153 24 S 0.165 5.835 25 H 0.103 0.897 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.176 0.824 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.386 0.614 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.276 0.724 37 H 0.092 0.908 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.208 -6.074 -6.275 23.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S -0.022 6.022 3 C -0.152 4.152 4 C -0.354 4.354 5 C -0.093 4.093 6 N -0.175 5.175 7 C -0.229 4.229 8 C 0.085 3.915 9 N -0.392 5.392 10 C -0.007 4.007 11 C -0.184 4.184 12 C -0.144 4.144 13 C 0.073 3.927 14 C -0.497 4.497 15 H 0.091 0.909 16 C -0.140 4.140 17 N -0.434 5.434 18 Si 0.727 3.273 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.187 1.187 22 C -0.207 4.207 23 C -0.175 4.175 24 S 0.420 5.580 25 H 0.121 0.879 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.193 0.807 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.219 0.781 34 H 0.107 0.893 35 H 0.137 0.863 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.177 -7.331 -5.388 23.048 hybrid contribution -0.706 1.250 -0.805 1.646 sum -21.882 -6.081 -6.193 23.541 Atomic orbital electron populations 1.23427 0.94278 1.06750 1.05016 1.87376 1.06966 1.09788 1.98054 1.21577 0.91800 0.95609 1.06262 1.25219 0.98950 1.14604 0.96639 1.21756 0.87057 1.00526 0.99981 1.66384 1.17135 1.15190 1.18785 1.27333 1.01472 1.02766 0.91333 1.19538 0.85694 0.86371 0.99863 1.43692 1.13871 1.02964 1.78690 1.17269 0.85333 0.92825 1.05230 1.20089 0.94917 0.95964 1.07428 1.20925 0.95459 0.96819 1.01231 1.17516 0.92516 0.91250 0.91396 1.19369 1.00442 1.01075 1.28824 0.90908 1.25799 1.00234 0.94340 0.93675 1.69849 1.37058 1.13142 1.23323 0.86411 0.82995 0.78566 0.79332 1.19862 1.20270 1.18652 1.20540 0.93338 0.97838 1.08966 1.19787 0.97561 0.92426 1.07767 1.84146 0.98654 1.65310 1.09863 0.87859 0.90360 0.90344 0.88757 0.87995 0.80715 0.90111 0.91035 0.78142 0.89314 0.86333 0.91296 0.88969 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.61 10.76 101.05 1.09 0.48 16 2 S -0.25 -2.10 22.36 -107.50 -2.40 -4.50 16 3 C 0.00 -0.02 6.47 36.00 0.23 0.21 16 4 C -0.23 -2.33 5.86 -35.93 -0.21 -2.54 16 5 C 0.06 0.71 11.25 -19.19 -0.22 0.49 16 6 N -0.46 -6.47 10.54 -11.86 -0.13 -6.59 16 7 C 0.05 0.67 6.76 -13.45 -0.09 0.58 16 8 C 0.21 3.28 5.47 -5.19 -0.03 3.25 16 9 N -0.75 -13.24 5.69 -59.67 -0.34 -13.58 16 10 C 0.09 1.94 6.67 -83.68 -0.56 1.38 16 11 C -0.16 -3.75 9.23 -39.77 -0.37 -4.11 16 12 C -0.12 -3.24 8.63 -39.26 -0.34 -3.58 16 13 C 0.08 2.05 5.57 -106.79 -0.59 1.46 16 14 C -0.47 -12.63 9.03 -37.87 -0.34 -12.97 16 15 H 0.07 1.91 7.91 -52.49 -0.41 1.49 16 16 C 0.07 1.93 5.13 -17.34 -0.09 1.84 16 17 N -0.81 -21.31 10.98 55.54 0.61 -20.70 16 18 Si 0.90 19.19 29.60 -169.99 -5.03 14.16 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 21 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 22 C -0.19 -4.60 9.74 -39.26 -0.38 -4.99 16 23 C -0.15 -3.43 9.82 -39.77 -0.39 -3.82 16 24 S 0.16 1.85 23.18 -107.50 -2.49 -0.64 16 25 H 0.10 0.43 8.14 -51.92 -0.42 0.01 16 26 H 0.08 0.32 8.14 -51.92 -0.42 -0.11 16 27 H 0.08 0.30 8.14 -51.92 -0.42 -0.12 16 28 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 29 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 30 H 0.18 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.08 1.30 7.94 -51.93 -0.41 0.88 16 32 H 0.07 1.06 7.92 -51.93 -0.41 0.65 16 33 H 0.39 6.28 8.46 -40.82 -0.35 5.94 16 34 H 0.09 1.84 6.68 -52.49 -0.35 1.49 16 35 H 0.12 3.20 6.18 -52.48 -0.32 2.87 16 36 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 37 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 38 H 0.09 1.71 8.06 -52.48 -0.42 1.28 16 LS Contribution 352.31 15.07 5.31 5.31 Total: -1.00 -29.30 352.31 -11.54 -40.84 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -4.78 Total: 8.04 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: -2.29 Total: -22.33 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.14 Total: -40.87 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Atomic # 16 Polarization: -0.25 SS G_CDS: -4.90 Total: -5.15 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.30 -11.54 -40.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293658304.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.979 kcal (2) G-P(sol) polarization free energy of solvation -29.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds