Wall clock time and date at job start Tue Mar 31 2020 12:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81400 * 102.99932 * 2 1 4 4 C 1.50696 * 109.47126 * 180.02562 * 3 2 1 5 5 C 1.33628 * 126.03755 * 89.99921 * 4 3 2 6 6 N 1.31787 * 114.50169 * 179.97438 * 5 4 3 7 7 C 1.29029 * 117.12038 * 0.02562 * 6 5 4 8 8 C 1.50707 * 124.91614 * 179.97438 * 7 6 5 9 9 N 1.46495 * 109.47011 * 90.01850 * 8 7 6 10 10 C 1.38864 * 119.99605 * 180.02562 * 9 8 7 11 11 C 1.39565 * 119.84138 * 359.72655 * 10 9 8 12 12 C 1.36343 * 120.15558 * 179.72496 * 11 10 9 13 13 C 1.40888 * 119.83894 * 0.54427 * 12 11 10 14 14 C 1.41137 * 120.15598 * 179.70372 * 13 12 11 15 15 H 1.08001 * 119.99924 * 155.11840 * 14 13 12 16 16 C 1.39864 * 119.99862 * 335.11100 * 14 13 12 17 17 N 1.30900 * 120.00290 * 342.13242 * 16 14 13 18 18 Si 1.86803 * 119.99906 * 162.13161 * 16 14 13 19 19 H 1.48495 * 109.47361 * 94.65496 * 18 16 14 20 20 H 1.48499 * 109.46879 * 214.65575 * 18 16 14 21 21 H 1.48508 * 109.46781 * 334.65246 * 18 16 14 22 22 C 1.40891 * 119.68598 * 359.73190 * 13 12 11 23 23 C 1.36334 * 119.83826 * 359.97438 * 22 13 12 24 24 S 1.70974 * 110.16844 * 0.22046 * 7 6 5 25 25 H 1.09005 * 109.46874 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47440 * 299.99671 * 1 2 3 27 27 H 1.09000 * 109.47133 * 60.00432 * 1 2 3 28 28 H 1.09007 * 109.46893 * 59.99547 * 3 2 1 29 29 H 1.09003 * 109.47025 * 300.00277 * 3 2 1 30 30 H 1.07999 * 122.75656 * 0.02562 * 5 4 3 31 31 H 1.08998 * 109.46728 * 330.02152 * 8 7 6 32 32 H 1.08993 * 109.46898 * 210.02155 * 8 7 6 33 33 H 0.96996 * 120.00438 * 0.02562 * 9 8 7 34 34 H 1.07996 * 119.92265 * 359.97438 * 11 10 9 35 35 H 1.08003 * 120.07955 * 180.27628 * 12 11 10 36 36 H 0.96999 * 120.00537 * 179.97438 * 17 16 14 37 37 H 1.07999 * 120.07495 * 179.97438 * 22 13 12 38 38 H 1.08003 * 119.91901 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9374 -0.0006 5 6 4.5001 2.0261 -1.0815 6 7 5.7832 2.1721 -0.8185 7 6 6.1282 2.2110 0.4242 8 6 7.5414 2.3713 0.9225 9 7 7.8435 3.7956 1.0846 10 6 9.0953 4.1928 1.5356 11 6 10.0612 3.2322 1.8389 12 6 11.2943 3.6152 2.2769 13 6 11.5884 4.9841 2.4340 14 6 12.8605 5.3879 2.8929 15 1 13.2370 6.3696 2.6462 16 6 13.6335 4.5166 3.6672 17 7 13.0717 3.4928 4.2584 18 14 15.4679 4.8142 3.8578 19 1 15.7176 5.5859 5.1016 20 1 16.1754 3.5108 3.9335 21 1 15.9687 5.5822 2.6896 22 6 10.6063 5.9480 2.1314 23 6 9.3796 5.5507 1.6886 24 16 4.7507 2.0476 1.4237 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8031 2.2371 0.8900 29 1 1.8031 2.2371 -0.8900 30 1 4.1115 1.9825 -2.0882 31 1 8.2324 1.9330 0.2024 32 1 7.6478 1.8657 1.8822 33 1 7.1691 4.4611 0.8769 34 1 9.8328 2.1831 1.7226 35 1 12.0423 2.8710 2.5070 36 1 13.6078 2.8883 4.7951 37 1 10.8249 6.9990 2.2499 38 1 8.6257 6.2884 1.4567 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293658304.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:48 Heat of formation + Delta-G solvation = 51.338902 kcal Electronic energy + Delta-G solvation = -20204.721702 eV Core-core repulsion = 17071.130367 eV Total energy + Delta-G solvation = -3133.591335 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 320.071 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.89678 -39.72352 -36.91381 -35.02879 -33.74326 -31.37410 -31.23713 -29.84741 -29.17510 -26.84033 -25.75388 -24.57695 -22.94179 -21.88656 -20.53059 -19.28699 -19.14289 -17.94783 -17.34103 -16.90757 -16.74602 -16.02560 -15.73844 -15.56676 -15.34051 -14.98647 -14.72681 -14.60732 -14.38153 -14.30354 -14.06199 -13.82134 -13.56623 -13.43702 -13.29482 -12.95878 -12.72121 -12.60763 -12.30863 -12.26491 -11.58809 -11.21914 -11.16137 -11.08607 -10.72875 -10.36076 -10.28056 -9.89938 -9.40016 -8.76105 -8.54693 -8.21112 -6.00930 -0.66732 0.18021 0.63717 0.76328 1.10984 1.19252 1.41564 1.53688 1.56468 1.59872 1.80137 2.28549 2.80922 2.85528 3.10406 3.56687 3.84243 3.86696 3.94235 4.35707 4.36369 4.40058 4.40592 4.44847 4.50105 4.57399 4.60440 4.90919 5.03551 5.07037 5.11187 5.27575 5.45489 5.65846 5.79182 5.94791 6.19647 6.37714 6.62411 6.64040 6.83248 7.05905 7.09441 7.25107 8.49039 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.042427 B = 0.002022 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.800098 B =13846.832457 C =14107.233209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.308 6.308 3 C 0.005 3.995 4 C -0.213 4.213 5 C 0.045 3.955 6 N -0.482 5.482 7 C 0.022 3.978 8 C 0.215 3.785 9 N -0.744 5.744 10 C 0.111 3.889 11 C -0.172 4.172 12 C -0.143 4.143 13 C 0.037 3.963 14 C -0.505 4.505 15 H 0.068 0.932 16 C 0.032 3.968 17 N -0.840 5.840 18 Si 0.975 3.025 19 H -0.265 1.265 20 H -0.269 1.269 21 H -0.262 1.262 22 C -0.195 4.195 23 C -0.160 4.160 24 S 0.188 5.812 25 H 0.109 0.891 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.126 0.874 30 H 0.196 0.804 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.395 0.605 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.283 0.717 37 H 0.098 0.902 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.746 -6.092 -6.785 26.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.082 6.082 3 C -0.145 4.145 4 C -0.336 4.336 5 C -0.110 4.110 6 N -0.197 5.197 7 C -0.255 4.255 8 C 0.087 3.913 9 N -0.381 5.381 10 C 0.012 3.988 11 C -0.194 4.194 12 C -0.163 4.163 13 C 0.034 3.966 14 C -0.536 4.536 15 H 0.086 0.914 16 C -0.180 4.180 17 N -0.468 5.468 18 Si 0.797 3.203 19 H -0.190 1.190 20 H -0.193 1.193 21 H -0.186 1.186 22 C -0.215 4.215 23 C -0.182 4.182 24 S 0.443 5.557 25 H 0.128 0.872 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.127 0.873 29 H 0.144 0.856 30 H 0.213 0.787 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.229 0.771 34 H 0.126 0.874 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -23.757 -7.352 -5.914 25.562 hybrid contribution -0.255 1.191 -0.726 1.418 sum -24.012 -6.160 -6.640 25.664 Atomic orbital electron populations 1.23472 0.90498 1.07599 1.06300 1.87595 1.11207 1.11148 1.98255 1.21674 0.89819 0.94827 1.08157 1.25573 1.00244 1.12140 0.95654 1.22060 0.86288 1.01293 1.01324 1.66341 1.18831 1.15291 1.19284 1.26887 1.01306 1.05337 0.92003 1.19491 0.87173 0.84657 0.99991 1.43692 1.12461 1.04556 1.77370 1.17344 0.86305 0.92416 1.02689 1.20260 0.94361 0.97441 1.07298 1.20856 0.96381 0.96319 1.02776 1.17852 0.93499 0.92180 0.93094 1.19590 1.01695 1.01689 1.30609 0.91379 1.26605 1.04650 0.93902 0.92836 1.69909 1.38788 1.14074 1.23995 0.85304 0.76988 0.78710 0.79313 1.19004 1.19316 1.18586 1.20741 0.93952 0.97908 1.08879 1.20076 0.97443 0.93512 1.07195 1.84030 0.97568 1.64417 1.09673 0.87231 0.89224 0.88893 0.87300 0.85619 0.78695 0.91076 0.90483 0.77054 0.87393 0.88207 0.90711 0.88387 0.86524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.76 113.37 1.22 0.48 16 2 S -0.31 -4.53 22.36 -56.49 -1.26 -5.79 16 3 C 0.00 0.06 6.47 71.23 0.46 0.52 16 4 C -0.21 -3.78 5.86 24.64 0.14 -3.64 16 5 C 0.05 0.93 11.25 83.65 0.94 1.87 16 6 N -0.48 -12.93 10.54 -191.45 -2.02 -14.95 16 7 C 0.02 0.57 6.76 88.52 0.60 1.16 16 8 C 0.21 6.39 5.47 85.64 0.47 6.86 16 9 N -0.74 -25.06 5.69 -342.71 -1.95 -27.01 16 10 C 0.11 4.72 6.67 38.67 0.26 4.97 16 11 C -0.17 -8.00 9.23 22.15 0.20 -7.80 16 12 C -0.14 -7.72 8.63 22.48 0.19 -7.53 16 13 C 0.04 2.04 5.57 -21.27 -0.12 1.92 16 14 C -0.50 -28.43 9.03 23.38 0.21 -28.22 16 15 H 0.07 3.72 7.91 -2.91 -0.02 3.70 16 16 C 0.03 1.70 5.13 85.23 0.44 2.14 16 17 N -0.84 -45.80 10.98 21.82 0.24 -45.57 16 18 Si 0.98 40.22 29.60 68.60 2.03 42.25 16 19 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 20 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 21 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 22 C -0.19 -9.74 9.74 22.48 0.22 -9.53 16 23 C -0.16 -7.03 9.82 22.15 0.22 -6.81 16 24 S 0.19 3.87 23.18 -56.49 -1.31 2.56 16 25 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.20 3.01 8.06 -2.91 -0.02 2.99 16 31 H 0.07 2.26 7.94 -2.39 -0.02 2.24 16 32 H 0.08 2.21 7.92 -2.39 -0.02 2.19 16 33 H 0.40 12.06 8.46 -92.71 -0.78 11.28 16 34 H 0.11 4.50 6.68 -2.91 -0.02 4.48 16 35 H 0.10 5.67 6.18 -2.91 -0.02 5.65 16 36 H 0.28 14.01 8.30 -92.71 -0.77 13.24 16 37 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 38 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -65.22 352.31 1.48 -63.74 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: 0.30 Total: 28.36 kcal Atomic # 6 Polarization: -49.04 SS G_CDS: 5.45 Total: -43.59 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -3.73 Total: -87.52 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Atomic # 16 Polarization: -0.66 SS G_CDS: -2.57 Total: -3.24 kcal Total: -65.22 1.48 -63.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293658304.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.075 kcal (2) G-P(sol) polarization free energy of solvation -65.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds