Wall clock time and date at job start Tue Mar 31 2020 12:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 119.99817 * 2 1 4 4 H 1.48500 * 109.47177 * 270.00199 * 3 2 1 5 5 H 1.48497 * 109.46883 * 30.00053 * 3 2 1 6 6 H 1.48493 * 109.47158 * 149.99941 * 3 2 1 7 7 C 1.37874 * 120.00337 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99980 * 0.02562 * 7 2 1 9 9 C 1.50708 * 119.99935 * 179.97438 * 7 2 1 10 10 N 1.46495 * 109.46736 * 179.97438 * 9 7 2 11 11 C 1.46499 * 120.00268 * 264.48534 * 10 9 7 12 12 C 1.50699 * 109.47524 * 269.65349 * 11 10 9 13 13 C 1.34512 * 125.78850 * 89.71299 * 12 11 10 14 14 C 1.41389 * 106.84148 * 179.89241 * 13 12 11 15 15 C 1.34514 * 106.83738 * 0.37268 * 14 13 12 16 16 O 1.34302 * 125.79089 * 270.02917 * 12 11 10 17 17 C 1.34784 * 120.00094 * 84.76575 * 10 9 7 18 18 O 1.21568 * 120.00276 * 174.57597 * 17 10 9 19 19 C 1.47705 * 119.99547 * 354.58221 * 17 10 9 20 20 N 1.31814 * 126.52270 * 354.11707 * 19 17 10 21 21 N 1.28461 * 110.07510 * 179.82375 * 20 19 17 22 22 H 0.97000 * 124.88169 * 180.16700 * 21 20 19 23 23 C 1.35033 * 110.23101 * 0.45137 * 21 20 19 24 24 C 1.35363 * 107.23138 * 359.73034 * 23 21 20 25 25 N 1.48004 * 127.25321 * 179.97438 * 24 23 21 26 26 O 1.21801 * 119.99546 * 0.04307 * 25 24 23 27 27 O 1.21795 * 120.00332 * 180.02562 * 25 24 23 28 28 H 0.96999 * 120.00552 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46976 * 60.00386 * 9 7 2 30 30 H 1.09000 * 109.47322 * 300.00185 * 9 7 2 31 31 H 1.08998 * 109.47143 * 29.65507 * 11 10 9 32 32 H 1.09004 * 109.47411 * 149.65364 * 11 10 9 33 33 H 1.08002 * 126.57978 * 0.02656 * 13 12 11 34 34 H 1.07995 * 126.58051 * 180.16289 * 14 13 12 35 35 H 1.07997 * 125.78881 * 179.74910 * 15 14 13 36 36 H 1.08004 * 126.38614 * 179.72854 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 7 3.9999 -2.5750 -0.0010 11 6 4.3596 -3.2248 1.2618 12 6 5.8182 -2.9834 1.5535 13 6 6.3209 -1.9439 2.2434 14 6 7.7240 -2.1154 2.2782 15 6 7.9953 -3.2451 1.6003 16 8 6.8372 -3.7665 1.1636 17 6 4.1237 -3.2462 -1.1633 18 8 4.6208 -4.3555 -1.1747 19 6 3.6555 -2.6337 -2.4232 20 7 3.0042 -1.4944 -2.5469 21 7 2.7551 -1.2612 -3.7854 22 1 2.2874 -0.4799 -4.1196 23 6 3.2327 -2.2631 -4.5545 24 6 3.8155 -3.1614 -3.7264 25 7 4.4796 -4.4289 -4.1042 26 8 4.5430 -4.7576 -5.2754 27 8 4.9631 -5.1431 -3.2443 28 1 -0.4851 0.8400 -0.0004 29 1 3.8752 -0.6803 0.8889 30 1 3.8746 -0.6798 -0.8911 31 1 3.7545 -2.8111 2.0685 32 1 4.1772 -4.2966 1.1839 33 1 5.7602 -1.1347 2.6877 34 1 8.4405 -1.4627 2.7544 35 1 8.9778 -3.6618 1.4348 36 1 3.1627 -2.3345 -5.6299 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345433398.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:40 Heat of formation + Delta-G solvation = 85.074013 kcal Electronic energy + Delta-G solvation = -27477.203691 eV Core-core repulsion = 23356.029135 eV Total energy + Delta-G solvation = -4121.174556 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.100 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.12091 -42.24362 -41.30545 -39.01202 -36.00601 -35.40396 -32.89785 -32.54706 -32.35805 -31.56691 -30.23471 -27.97115 -26.42779 -25.88225 -23.64169 -22.42520 -21.57578 -21.39175 -20.41289 -19.58069 -18.50344 -18.03713 -17.36760 -17.14596 -17.10888 -16.89278 -16.51866 -15.96657 -15.63234 -15.14416 -14.73437 -14.23872 -13.98389 -13.50936 -13.16450 -12.72795 -12.57961 -12.49802 -12.38601 -12.19135 -11.50274 -11.25986 -11.06566 -10.95852 -10.83100 -10.61924 -10.46796 -10.29298 -9.86677 -9.74875 -9.64284 -9.61155 -9.44334 -8.74788 -8.28984 -7.98415 -6.24764 -4.21730 0.50164 1.61457 1.63804 1.94260 2.12399 2.74971 2.85213 3.07330 3.18977 3.20786 3.27802 3.57351 3.75200 4.21787 4.31889 4.45828 4.76090 4.98005 5.04631 5.08017 5.26924 5.28636 5.50477 5.71208 5.93604 6.02611 6.16619 6.31619 6.35986 6.54260 6.73138 6.74411 6.77071 7.14653 7.39704 7.44780 7.60420 7.89411 8.14931 8.31349 8.65763 8.80097 9.35353 10.88058 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.008075 B = 0.007960 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3466.607362 B = 3516.725295 C = 6288.194339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.081 3.919 3 Si 0.868 3.132 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.510 4.510 8 H 0.076 0.924 9 C 0.206 3.794 10 N -0.575 5.575 11 C 0.199 3.801 12 C -0.017 4.017 13 C -0.205 4.205 14 C -0.220 4.220 15 C -0.047 4.047 16 O -0.161 6.161 17 C 0.585 3.415 18 O -0.500 6.500 19 C 0.052 3.948 20 N -0.160 5.160 21 N -0.369 5.369 22 H 0.460 0.540 23 C 0.071 3.929 24 C -0.124 4.124 25 N 0.058 4.942 26 O -0.207 6.207 27 O -0.087 6.087 28 H 0.264 0.736 29 H 0.035 0.965 30 H 0.042 0.958 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.197 0.803 36 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.977 0.155 -3.639 9.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.122 4.122 3 Si 0.695 3.305 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.549 4.549 8 H 0.094 0.906 9 C 0.085 3.915 10 N -0.307 5.307 11 C 0.076 3.924 12 C -0.069 4.069 13 C -0.225 4.225 14 C -0.239 4.239 15 C -0.115 4.115 16 O -0.055 6.055 17 C 0.369 3.631 18 O -0.373 6.373 19 C -0.112 4.112 20 N 0.007 4.993 21 N -0.083 5.083 22 H 0.308 0.692 23 C -0.080 4.080 24 C -0.221 4.221 25 N 0.579 4.421 26 O -0.407 6.407 27 O -0.318 6.318 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.136 0.864 32 H 0.115 0.885 33 H 0.165 0.835 34 H 0.161 0.839 35 H 0.214 0.786 36 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 8.256 0.918 -3.130 8.877 hybrid contribution 0.540 0.969 -0.742 1.335 sum 8.795 1.887 -3.872 9.793 Atomic orbital electron populations 1.69891 1.06107 1.26871 1.50557 1.24716 0.94472 0.98382 0.94593 0.87001 0.80563 0.84366 0.78565 1.20372 1.21193 1.18965 1.21174 0.88487 0.94785 1.50434 0.90606 1.20083 0.96289 0.77132 0.97959 1.47819 1.62478 1.16211 1.04152 1.19792 0.84825 1.00468 0.87319 1.23170 0.90803 0.92489 1.00398 1.21656 0.94507 1.00644 1.05700 1.21777 0.96218 0.99831 1.06090 1.24003 0.89359 0.96729 1.01442 1.84143 1.14366 1.46306 1.60714 1.16812 0.79429 0.85057 0.81813 1.90960 1.42896 1.18180 1.85230 1.22076 1.02158 0.93514 0.93498 1.75025 1.11496 1.15203 0.97585 1.43785 1.41073 1.19110 1.04305 0.69231 1.22565 0.97093 0.88720 0.99574 1.21075 1.14008 0.92400 0.94581 1.42321 0.98796 1.00555 1.00411 1.94484 1.65401 1.77590 1.03252 1.94760 1.44407 1.48084 1.44545 0.92591 0.94694 0.94050 0.86443 0.88489 0.83507 0.83904 0.78606 0.77691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.56 13.96 55.43 0.77 -23.79 16 2 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.87 18.91 27.47 -169.99 -4.67 14.24 16 4 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.26 -5.57 6.54 56.52 0.37 -5.20 16 7 C -0.51 -12.53 8.28 -34.44 -0.29 -12.81 16 8 H 0.08 2.12 8.06 -52.49 -0.42 1.70 16 9 C 0.21 4.40 3.82 -5.19 -0.02 4.38 16 10 N -0.58 -11.63 2.45 -177.60 -0.44 -12.07 16 11 C 0.20 3.49 5.86 -5.19 -0.03 3.46 16 12 C -0.02 -0.28 6.90 -35.63 -0.25 -0.53 16 13 C -0.20 -3.19 10.81 -39.70 -0.43 -3.62 16 14 C -0.22 -3.02 10.91 -39.70 -0.43 -3.45 16 15 C -0.05 -0.64 12.09 29.42 0.36 -0.29 16 16 O -0.16 -2.80 10.65 5.71 0.06 -2.74 16 17 C 0.58 12.43 7.62 -12.39 -0.09 12.34 16 18 O -0.50 -11.32 13.11 -19.20 -0.25 -11.57 16 19 C 0.05 1.02 6.71 -82.76 -0.56 0.46 16 20 N -0.16 -2.93 7.80 33.42 0.26 -2.67 16 21 N -0.37 -4.83 6.83 30.47 0.21 -4.63 16 22 H 0.46 4.17 8.96 -190.44 -1.71 2.46 16 23 C 0.07 0.87 11.77 -17.17 -0.20 0.67 16 24 C -0.12 -2.15 7.25 -79.74 -0.58 -2.73 16 25 N 0.06 1.11 4.45 34.07 0.15 1.26 16 26 O -0.21 -3.68 19.07 -29.46 -0.56 -4.25 16 27 O -0.09 -1.84 15.63 -37.22 -0.58 -2.42 16 28 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.04 0.73 7.09 -51.93 -0.37 0.37 16 30 H 0.04 0.89 5.37 -51.93 -0.28 0.61 16 31 H 0.12 1.85 8.07 -51.93 -0.42 1.43 16 32 H 0.10 1.68 7.52 -51.93 -0.39 1.29 16 33 H 0.15 2.12 8.06 -52.49 -0.42 1.70 16 34 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.20 1.89 8.06 -52.49 -0.42 1.47 16 36 H 0.21 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 325.29 15.07 4.90 4.90 Total: -1.00 -33.49 325.29 -7.20 -40.69 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -4.44 Total: 3.22 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -2.62 Total: -0.19 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.96 Total: -41.90 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -1.33 Total: -20.97 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -4.67 Total: 14.24 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.49 -7.20 -40.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345433398.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.764 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds