Wall clock time and date at job start Tue Mar 31 2020 12:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 119.99817 * 2 1 4 4 H 1.48500 * 109.47177 * 270.00199 * 3 2 1 5 5 H 1.48497 * 109.46883 * 30.00053 * 3 2 1 6 6 H 1.48493 * 109.47158 * 149.99941 * 3 2 1 7 7 C 1.37874 * 120.00337 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99980 * 0.02562 * 7 2 1 9 9 C 1.50708 * 119.99935 * 179.97438 * 7 2 1 10 10 N 1.46495 * 109.46736 * 179.97438 * 9 7 2 11 11 C 1.46499 * 120.00268 * 264.48534 * 10 9 7 12 12 C 1.50699 * 109.47524 * 269.65349 * 11 10 9 13 13 C 1.34512 * 125.78850 * 89.71299 * 12 11 10 14 14 C 1.41389 * 106.84148 * 179.89241 * 13 12 11 15 15 C 1.34514 * 106.83738 * 0.37268 * 14 13 12 16 16 O 1.34302 * 125.79089 * 270.02917 * 12 11 10 17 17 C 1.34784 * 120.00094 * 84.76575 * 10 9 7 18 18 O 1.21568 * 120.00276 * 174.57597 * 17 10 9 19 19 C 1.47705 * 119.99547 * 354.58221 * 17 10 9 20 20 N 1.31814 * 126.52270 * 354.11707 * 19 17 10 21 21 N 1.28461 * 110.07510 * 179.82375 * 20 19 17 22 22 H 0.97000 * 124.88169 * 180.16700 * 21 20 19 23 23 C 1.35033 * 110.23101 * 0.45137 * 21 20 19 24 24 C 1.35363 * 107.23138 * 359.73034 * 23 21 20 25 25 N 1.48004 * 127.25321 * 179.97438 * 24 23 21 26 26 O 1.21801 * 119.99546 * 0.04307 * 25 24 23 27 27 O 1.21795 * 120.00332 * 180.02562 * 25 24 23 28 28 H 0.96999 * 120.00552 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46976 * 60.00386 * 9 7 2 30 30 H 1.09000 * 109.47322 * 300.00185 * 9 7 2 31 31 H 1.08998 * 109.47143 * 29.65507 * 11 10 9 32 32 H 1.09004 * 109.47411 * 149.65364 * 11 10 9 33 33 H 1.08002 * 126.57978 * 0.02656 * 13 12 11 34 34 H 1.07995 * 126.58051 * 180.16289 * 14 13 12 35 35 H 1.07997 * 125.78881 * 179.74910 * 15 14 13 36 36 H 1.08004 * 126.38614 * 179.72854 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 7 3.9999 -2.5750 -0.0010 11 6 4.3596 -3.2248 1.2618 12 6 5.8182 -2.9834 1.5535 13 6 6.3209 -1.9439 2.2434 14 6 7.7240 -2.1154 2.2782 15 6 7.9953 -3.2451 1.6003 16 8 6.8372 -3.7665 1.1636 17 6 4.1237 -3.2462 -1.1633 18 8 4.6208 -4.3555 -1.1747 19 6 3.6555 -2.6337 -2.4232 20 7 3.0042 -1.4944 -2.5469 21 7 2.7551 -1.2612 -3.7854 22 1 2.2874 -0.4799 -4.1196 23 6 3.2327 -2.2631 -4.5545 24 6 3.8155 -3.1614 -3.7264 25 7 4.4796 -4.4289 -4.1042 26 8 4.5430 -4.7576 -5.2754 27 8 4.9631 -5.1431 -3.2443 28 1 -0.4851 0.8400 -0.0004 29 1 3.8752 -0.6803 0.8889 30 1 3.8746 -0.6798 -0.8911 31 1 3.7545 -2.8111 2.0685 32 1 4.1772 -4.2966 1.1839 33 1 5.7602 -1.1347 2.6877 34 1 8.4405 -1.4627 2.7544 35 1 8.9778 -3.6618 1.4348 36 1 3.1627 -2.3345 -5.6299 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345433398.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:39 Heat of formation + Delta-G solvation = 63.157545 kcal Electronic energy + Delta-G solvation = -27478.154061 eV Core-core repulsion = 23356.029135 eV Total energy + Delta-G solvation = -4122.124925 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.100 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.39639 -43.44594 -42.72123 -40.58329 -37.44500 -37.02617 -34.62170 -33.90695 -33.66375 -32.87444 -31.59132 -29.68950 -27.79115 -27.23337 -25.16608 -24.05824 -22.90769 -22.58010 -21.65504 -20.85129 -19.92097 -19.45624 -19.10514 -18.57299 -18.35810 -18.22662 -18.01509 -17.40260 -16.97394 -16.49806 -16.24277 -15.83566 -15.33170 -14.89242 -14.67736 -14.35231 -14.11477 -13.70212 -13.65405 -13.55619 -13.09223 -12.74808 -12.58535 -12.51532 -12.36048 -12.11060 -12.07827 -11.80770 -11.64771 -11.15550 -11.07783 -10.92823 -10.81266 -10.64558 -9.70219 -9.40429 -8.20295 -6.22077 -0.86027 0.29222 0.32423 0.72121 0.79874 1.37328 1.43873 1.50914 1.59857 1.73383 2.02945 2.15392 2.34226 2.39178 3.04136 3.15352 3.22813 3.52216 3.80643 3.91700 4.13192 4.17329 4.24485 4.37840 4.54360 4.64898 4.89873 4.95951 5.03044 5.20542 5.33819 5.49860 5.50744 5.64694 5.69152 6.14948 6.28321 6.32104 6.47679 6.69692 6.76323 7.08364 7.39421 8.96055 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.008075 B = 0.007960 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3466.607362 B = 3516.725295 C = 6288.194339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.036 3.964 3 Si 0.926 3.074 4 H -0.257 1.257 5 H -0.292 1.292 6 H -0.250 1.250 7 C -0.498 4.498 8 H 0.027 0.973 9 C 0.219 3.781 10 N -0.579 5.579 11 C 0.196 3.804 12 C -0.046 4.046 13 C -0.203 4.203 14 C -0.223 4.223 15 C -0.045 4.045 16 O -0.190 6.190 17 C 0.573 3.427 18 O -0.525 6.525 19 C 0.027 3.973 20 N -0.190 5.190 21 N -0.351 5.351 22 H 0.479 0.521 23 C 0.128 3.872 24 C -0.158 4.158 25 N 0.063 4.937 26 O -0.155 6.155 27 O -0.175 6.175 28 H 0.265 0.735 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.128 0.872 32 H 0.086 0.914 33 H 0.157 0.843 34 H 0.175 0.825 35 H 0.235 0.765 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.469 2.478 -5.432 12.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.162 4.162 3 Si 0.750 3.250 4 H -0.182 1.182 5 H -0.219 1.219 6 H -0.174 1.174 7 C -0.537 4.537 8 H 0.046 0.954 9 C 0.098 3.902 10 N -0.310 5.310 11 C 0.074 3.926 12 C -0.097 4.097 13 C -0.223 4.223 14 C -0.241 4.241 15 C -0.112 4.112 16 O -0.086 6.086 17 C 0.358 3.642 18 O -0.399 6.399 19 C -0.138 4.138 20 N -0.024 5.024 21 N -0.068 5.068 22 H 0.331 0.669 23 C -0.023 4.023 24 C -0.256 4.256 25 N 0.580 4.420 26 O -0.372 6.372 27 O -0.384 6.384 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.146 0.854 32 H 0.104 0.896 33 H 0.175 0.825 34 H 0.192 0.808 35 H 0.251 0.749 36 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 9.802 3.203 -4.732 11.346 hybrid contribution 0.018 0.235 -0.387 0.453 sum 9.819 3.438 -5.119 11.595 Atomic orbital electron populations 1.70040 1.08065 1.27817 1.52584 1.25385 0.94949 1.01771 0.94104 0.86048 0.79576 0.79599 0.79744 1.18180 1.21860 1.17417 1.21103 0.89993 0.92873 1.49735 0.95436 1.19862 0.93947 0.77983 0.98448 1.47899 1.62282 1.15909 1.04886 1.19840 0.86255 0.99798 0.86697 1.22978 0.90421 0.93785 1.02496 1.21933 0.95770 0.99999 1.04561 1.22146 0.95751 1.00221 1.06028 1.24876 0.89606 0.96623 1.00124 1.84120 1.15550 1.47296 1.61643 1.17238 0.79197 0.85020 0.82782 1.90939 1.44014 1.19185 1.85771 1.21941 1.03473 0.94571 0.93791 1.74865 1.12022 1.15125 1.00391 1.43854 1.40075 1.19834 1.02989 0.66850 1.23382 0.92192 0.85545 1.01177 1.21270 1.16525 0.92867 0.94905 1.42483 0.98405 1.00936 1.00223 1.94414 1.62775 1.77081 1.02962 1.94804 1.48550 1.50057 1.44964 0.92602 0.93803 0.93352 0.85383 0.89559 0.82519 0.80790 0.74856 0.71679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.67 13.96 21.45 0.30 -52.37 16 2 C 0.04 1.83 5.47 84.65 0.46 2.29 16 3 Si 0.93 37.78 27.47 68.60 1.88 39.66 16 4 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 5 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.25 -9.56 6.54 99.48 0.65 -8.91 16 7 C -0.50 -25.01 8.28 25.60 0.21 -24.80 16 8 H 0.03 1.62 8.06 -2.91 -0.02 1.60 16 9 C 0.22 9.35 3.82 85.64 0.33 9.68 16 10 N -0.58 -24.30 2.45 -834.07 -2.05 -26.35 16 11 C 0.20 7.26 5.86 85.63 0.50 7.77 16 12 C -0.05 -1.59 6.90 24.83 0.17 -1.42 16 13 C -0.20 -6.11 10.81 22.19 0.24 -5.87 16 14 C -0.22 -5.63 10.91 22.19 0.24 -5.38 16 15 C -0.04 -1.17 12.09 66.97 0.81 -0.36 16 16 O -0.19 -6.73 10.65 -2.48 -0.03 -6.76 16 17 C 0.57 25.51 7.62 86.74 0.66 26.17 16 18 O -0.52 -25.42 13.11 19.50 0.26 -25.17 16 19 C 0.03 1.05 6.71 42.46 0.28 1.33 16 20 N -0.19 -6.77 7.80 -48.17 -0.38 -7.14 16 21 N -0.35 -8.07 6.83 -57.51 -0.39 -8.46 16 22 H 0.48 6.77 8.96 -220.00 -1.97 4.79 16 23 C 0.13 2.61 11.77 83.54 0.98 3.59 16 24 C -0.16 -5.28 7.25 36.52 0.26 -5.02 16 25 N 0.06 2.38 4.45 -46.13 -0.21 2.17 16 26 O -0.16 -5.14 19.07 18.88 0.36 -4.78 16 27 O -0.17 -7.80 15.63 26.31 0.41 -7.38 16 28 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 29 H 0.04 1.80 7.09 -2.39 -0.02 1.78 16 30 H 0.05 2.04 5.37 -2.39 -0.01 2.02 16 31 H 0.13 4.27 8.07 -2.39 -0.02 4.25 16 32 H 0.09 3.28 7.52 -2.39 -0.02 3.27 16 33 H 0.16 4.29 8.06 -2.91 -0.02 4.27 16 34 H 0.17 3.21 8.06 -2.91 -0.02 3.18 16 35 H 0.24 3.89 8.06 -2.91 -0.02 3.86 16 36 H 0.27 2.05 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -78.18 325.29 4.46 -73.72 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -0.86 Total: 14.88 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 5.16 Total: 7.98 kcal Atomic # 7 Polarization: -89.43 SS G_CDS: -2.72 Total: -92.15 kcal Atomic # 8 Polarization: -45.09 SS G_CDS: 1.00 Total: -44.09 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 1.88 Total: 39.66 kcal Total: -78.18 4.46 -73.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345433398.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.880 kcal (2) G-P(sol) polarization free energy of solvation -78.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds