Wall clock time and date at job start Tue Mar 31 2020 12:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37097 * 119.99632 * 2 1 4 4 H 1.07995 * 119.99729 * 204.38783 * 3 2 1 5 5 C 1.38953 * 120.00216 * 24.39531 * 3 2 1 6 6 N 1.31411 * 119.99770 * 12.64279 * 5 3 2 7 7 Si 1.86804 * 120.00022 * 192.63619 * 5 3 2 8 8 H 1.48494 * 109.46780 * 60.00094 * 7 5 3 9 9 H 1.48490 * 109.46862 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46767 * 300.00209 * 7 5 3 11 11 C 1.34770 * 120.00034 * 179.97438 * 2 1 3 12 12 O 1.21296 * 120.00191 * 180.02562 * 11 2 1 13 13 C 1.50702 * 120.00301 * 0.02562 * 11 2 1 14 14 C 1.50702 * 109.47388 * 179.97438 * 13 11 2 15 15 C 1.33731 * 122.07325 * 124.99482 * 14 13 11 16 16 S 1.76255 * 108.21408 * 179.97438 * 15 14 13 17 17 C 1.76175 * 89.83821 * 0.02562 * 16 15 14 18 18 C 1.47873 * 125.47474 * 179.73405 * 17 16 15 19 19 C 1.39577 * 120.12759 * 0.02668 * 18 17 16 20 20 C 1.37947 * 119.90726 * 179.97438 * 19 18 17 21 21 C 1.38336 * 120.17091 * 359.97438 * 20 19 18 22 22 C 1.38550 * 120.26267 * 359.97438 * 21 20 19 23 23 F 1.35093 * 119.95575 * 180.02562 * 22 21 20 24 24 C 1.38225 * 120.08861 * 359.79124 * 22 21 20 25 25 N 1.30228 * 109.05637 * 359.97438 * 17 16 15 26 26 H 1.09000 * 109.47530 * 265.86008 * 1 2 3 27 27 H 1.08997 * 109.46756 * 25.86247 * 1 2 3 28 28 H 1.09001 * 109.46562 * 145.86203 * 1 2 3 29 29 H 0.97005 * 119.99772 * 180.02562 * 6 5 3 30 30 H 1.08997 * 109.47111 * 59.99792 * 13 11 2 31 31 H 1.08999 * 109.46760 * 299.99947 * 13 11 2 32 32 H 1.07994 * 125.89147 * 0.02562 * 15 14 13 33 33 H 1.08004 * 120.04141 * 0.02562 * 19 18 17 34 34 H 1.07997 * 119.91511 * 179.97438 * 20 19 18 35 35 H 1.07999 * 119.86723 * 180.02562 * 21 20 19 36 36 H 1.07994 * 120.08499 * 180.25419 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1581 1.2291 -0.3862 5 6 1.5487 2.3370 0.4970 6 7 0.4345 2.2491 1.1882 7 14 2.3237 4.0074 0.1828 8 1 2.4040 4.2483 -1.2803 9 1 1.4932 5.0647 0.8132 10 1 3.6894 4.0368 0.7651 11 6 2.1389 -1.1671 0.0005 12 8 3.3519 -1.1672 0.0010 13 6 1.3855 -2.4723 0.0005 14 6 2.3648 -3.6177 0.0005 15 6 2.3323 -4.5798 0.9288 16 16 3.6279 -5.7235 0.5825 17 6 4.0959 -4.7618 -0.8174 18 6 5.2135 -5.0699 -1.7354 19 6 5.9990 -6.2047 -1.5268 20 6 7.0401 -6.4880 -2.3863 21 6 7.3072 -5.6508 -3.4546 22 6 6.5313 -4.5231 -3.6690 23 9 6.7974 -3.7100 -4.7145 24 6 5.4825 -4.2314 -2.8172 25 7 3.3028 -3.7331 -0.9110 26 1 -0.3634 -0.0742 1.0250 27 1 -0.3633 0.9247 -0.4483 28 1 -0.3632 -0.8506 -0.5767 29 1 0.0142 3.0517 1.5349 30 1 0.7592 -2.5303 -0.8896 31 1 0.7585 -2.5298 0.8903 32 1 1.6324 -4.6451 1.7487 33 1 5.7914 -6.8603 -0.6940 34 1 7.6482 -7.3658 -2.2248 35 1 8.1232 -5.8776 -4.1248 36 1 4.8752 -3.3546 -2.9867 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368858615.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:07 Heat of formation + Delta-G solvation = 3.404471 kcal Electronic energy + Delta-G solvation = -23178.534894 eV Core-core repulsion = 19476.651791 eV Total energy + Delta-G solvation = -3701.883104 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.074 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.96291 -39.93826 -38.92838 -37.91096 -34.58396 -32.86750 -31.63533 -30.79344 -30.33783 -27.97481 -26.12353 -25.23702 -24.16622 -22.93039 -21.88209 -19.68226 -18.90618 -17.96659 -16.97331 -16.75058 -16.38891 -16.20162 -16.01239 -15.67624 -15.22952 -14.67213 -14.35471 -14.17925 -13.94578 -13.86260 -13.45893 -13.25938 -12.89968 -12.58084 -12.21186 -12.13846 -12.03046 -11.52360 -11.36579 -11.33970 -11.17091 -11.04150 -10.80745 -10.37159 -10.20248 -9.85537 -9.49068 -9.11046 -8.98287 -8.95543 -8.40454 -8.08597 -7.59972 -6.28186 -3.83640 0.20542 1.01133 1.35621 1.42829 1.76481 2.98676 3.22366 3.26992 3.31876 3.55735 3.88172 3.97790 4.13406 4.18703 4.55626 4.75948 4.86487 4.93781 5.03608 5.15152 5.17199 5.28365 5.50371 5.56678 5.78871 5.83613 5.92302 5.94331 6.02206 6.03404 6.13650 6.34513 6.44848 6.65565 6.86692 7.20915 7.61056 7.96232 8.19713 8.54652 9.24850 9.47236 10.04972 10.77113 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.014431 B = 0.003456 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.778961 B = 8099.630590 C = 9613.418902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.450 5.450 3 C -0.303 4.303 4 H 0.096 0.904 5 C 0.030 3.970 6 N -0.885 5.885 7 Si 0.925 3.075 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.273 1.273 11 C 0.455 3.545 12 O -0.571 6.571 13 C -0.066 4.066 14 C 0.109 3.891 15 C -0.243 4.243 16 S 0.065 5.935 17 C 0.102 3.898 18 C 0.016 3.984 19 C -0.113 4.113 20 C -0.090 4.090 21 C -0.146 4.146 22 C 0.100 3.900 23 F -0.136 7.136 24 C -0.106 4.106 25 N -0.415 5.415 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.025 0.975 29 H 0.267 0.733 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.180 0.820 33 H 0.131 0.869 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.092 -18.871 -4.404 20.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.170 5.170 3 C -0.431 4.431 4 H 0.114 0.886 5 C -0.173 4.173 6 N -0.525 5.525 7 Si 0.752 3.248 8 H -0.199 1.199 9 H -0.210 1.210 10 H -0.199 1.199 11 C 0.242 3.758 12 O -0.454 6.454 13 C -0.109 4.109 14 C -0.024 4.024 15 C -0.381 4.381 16 S 0.321 5.679 17 C -0.174 4.174 18 C 0.012 3.988 19 C -0.134 4.134 20 C -0.108 4.108 21 C -0.166 4.166 22 C 0.081 3.919 23 F -0.114 7.114 24 C -0.128 4.128 25 N -0.127 5.127 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.197 0.803 33 H 0.149 0.851 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.925 -19.238 -4.227 20.569 hybrid contribution -0.519 1.828 0.009 1.900 sum 5.406 -17.410 -4.219 18.712 Atomic orbital electron populations 1.21479 0.81379 0.99936 1.00459 1.43523 1.05330 1.04593 1.63591 1.19580 1.00570 0.84144 1.38788 0.88622 1.25317 0.96688 1.00034 0.95253 1.69981 1.19313 1.29598 1.33617 0.86014 0.79025 0.81056 0.78706 1.19935 1.20992 1.19850 1.19721 0.88090 0.84214 0.83782 1.90552 1.13670 1.86770 1.54428 1.20339 0.95772 0.90849 1.03944 1.19697 0.95462 0.96310 0.90915 1.26759 1.05216 0.99701 1.06470 1.84507 1.27862 1.28795 1.26728 1.25602 0.99908 0.94269 0.97647 1.17587 0.92880 0.95111 0.93240 1.21200 0.95645 0.96302 1.00231 1.20826 0.96986 0.99346 0.93674 1.21261 1.00825 0.94475 1.00032 1.17562 0.96836 0.90634 0.86911 1.91524 1.93296 1.71664 1.54957 1.21355 0.97040 1.00977 0.93446 1.66243 1.03469 1.16713 1.26267 0.93072 0.90699 0.95683 0.92308 0.88567 0.88511 0.80299 0.85093 0.84397 0.84466 0.83034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.47 8.44 59.85 0.51 2.97 16 2 N -0.45 -11.71 3.01 -122.19 -0.37 -12.08 16 3 C -0.30 -8.63 9.24 -14.93 -0.14 -8.77 16 4 H 0.10 2.88 7.45 -52.49 -0.39 2.48 16 5 C 0.03 0.80 5.04 -17.47 -0.09 0.71 16 6 N -0.89 -23.86 10.83 55.50 0.60 -23.26 16 7 Si 0.93 21.22 29.57 -169.99 -5.03 16.19 16 8 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 C 0.46 11.31 7.59 -10.99 -0.08 11.23 16 12 O -0.57 -16.35 15.14 5.54 0.08 -16.26 16 13 C -0.07 -1.23 4.78 -29.03 -0.14 -1.37 16 14 C 0.11 1.97 5.61 -84.40 -0.47 1.50 16 15 C -0.24 -3.56 11.02 29.15 0.32 -3.23 16 16 S 0.07 0.84 22.40 -107.50 -2.41 -1.57 16 17 C 0.10 1.62 7.35 -14.29 -0.11 1.52 16 18 C 0.02 0.22 5.87 -104.99 -0.62 -0.40 16 19 C -0.11 -1.18 9.60 -39.19 -0.38 -1.55 16 20 C -0.09 -0.77 10.03 -39.65 -0.40 -1.17 16 21 C -0.15 -1.41 10.02 -39.43 -0.40 -1.80 16 22 C 0.10 1.27 7.29 -39.47 -0.29 0.98 16 23 F -0.14 -1.85 17.26 2.25 0.04 -1.81 16 24 C -0.11 -1.54 9.66 -39.12 -0.38 -1.92 16 25 N -0.41 -7.96 9.22 -7.55 -0.07 -8.03 16 26 H 0.05 1.15 7.83 -51.93 -0.41 0.74 16 27 H 0.07 1.77 6.80 -51.93 -0.35 1.41 16 28 H 0.02 0.45 6.61 -51.93 -0.34 0.11 16 29 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.10 1.61 7.41 -51.93 -0.38 1.22 16 31 H 0.10 1.55 7.97 -51.93 -0.41 1.13 16 32 H 0.18 2.06 8.06 -52.49 -0.42 1.64 16 33 H 0.13 1.11 7.30 -52.48 -0.38 0.72 16 34 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 35 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.15 2.50 7.82 -52.49 -0.41 2.08 16 LS Contribution 331.96 15.07 5.00 5.00 Total: -1.00 -33.61 331.96 -8.29 -41.89 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -3.49 Total: 1.22 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -2.65 Total: -1.31 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 0.16 Total: -43.36 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: 0.08 Total: -16.26 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.41 Total: -1.57 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.61 -8.29 -41.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368858615.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.298 kcal (2) G-P(sol) polarization free energy of solvation -33.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds