Wall clock time and date at job start Tue Mar 31 2020 12:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37097 * 119.99632 * 2 1 4 4 H 1.07995 * 119.99729 * 204.38783 * 3 2 1 5 5 C 1.38953 * 120.00216 * 24.39531 * 3 2 1 6 6 N 1.31411 * 119.99770 * 12.64279 * 5 3 2 7 7 Si 1.86804 * 120.00022 * 192.63619 * 5 3 2 8 8 H 1.48494 * 109.46780 * 60.00094 * 7 5 3 9 9 H 1.48490 * 109.46862 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46767 * 300.00209 * 7 5 3 11 11 C 1.34770 * 120.00034 * 179.97438 * 2 1 3 12 12 O 1.21296 * 120.00191 * 180.02562 * 11 2 1 13 13 C 1.50702 * 120.00301 * 0.02562 * 11 2 1 14 14 C 1.50702 * 109.47388 * 179.97438 * 13 11 2 15 15 C 1.33731 * 122.07325 * 124.99482 * 14 13 11 16 16 S 1.76255 * 108.21408 * 179.97438 * 15 14 13 17 17 C 1.76175 * 89.83821 * 0.02562 * 16 15 14 18 18 C 1.47873 * 125.47474 * 179.73405 * 17 16 15 19 19 C 1.39577 * 120.12759 * 0.02668 * 18 17 16 20 20 C 1.37947 * 119.90726 * 179.97438 * 19 18 17 21 21 C 1.38336 * 120.17091 * 359.97438 * 20 19 18 22 22 C 1.38550 * 120.26267 * 359.97438 * 21 20 19 23 23 F 1.35093 * 119.95575 * 180.02562 * 22 21 20 24 24 C 1.38225 * 120.08861 * 359.79124 * 22 21 20 25 25 N 1.30228 * 109.05637 * 359.97438 * 17 16 15 26 26 H 1.09000 * 109.47530 * 265.86008 * 1 2 3 27 27 H 1.08997 * 109.46756 * 25.86247 * 1 2 3 28 28 H 1.09001 * 109.46562 * 145.86203 * 1 2 3 29 29 H 0.97005 * 119.99772 * 180.02562 * 6 5 3 30 30 H 1.08997 * 109.47111 * 59.99792 * 13 11 2 31 31 H 1.08999 * 109.46760 * 299.99947 * 13 11 2 32 32 H 1.07994 * 125.89147 * 0.02562 * 15 14 13 33 33 H 1.08004 * 120.04141 * 0.02562 * 19 18 17 34 34 H 1.07997 * 119.91511 * 179.97438 * 20 19 18 35 35 H 1.07999 * 119.86723 * 180.02562 * 21 20 19 36 36 H 1.07994 * 120.08499 * 180.25419 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1581 1.2291 -0.3862 5 6 1.5487 2.3370 0.4970 6 7 0.4345 2.2491 1.1882 7 14 2.3237 4.0074 0.1828 8 1 2.4040 4.2483 -1.2803 9 1 1.4932 5.0647 0.8132 10 1 3.6894 4.0368 0.7651 11 6 2.1389 -1.1671 0.0005 12 8 3.3519 -1.1672 0.0010 13 6 1.3855 -2.4723 0.0005 14 6 2.3648 -3.6177 0.0005 15 6 2.3323 -4.5798 0.9288 16 16 3.6279 -5.7235 0.5825 17 6 4.0959 -4.7618 -0.8174 18 6 5.2135 -5.0699 -1.7354 19 6 5.9990 -6.2047 -1.5268 20 6 7.0401 -6.4880 -2.3863 21 6 7.3072 -5.6508 -3.4546 22 6 6.5313 -4.5231 -3.6690 23 9 6.7974 -3.7100 -4.7145 24 6 5.4825 -4.2314 -2.8172 25 7 3.3028 -3.7331 -0.9110 26 1 -0.3634 -0.0742 1.0250 27 1 -0.3633 0.9247 -0.4483 28 1 -0.3632 -0.8506 -0.5767 29 1 0.0142 3.0517 1.5349 30 1 0.7592 -2.5303 -0.8896 31 1 0.7585 -2.5298 0.8903 32 1 1.6324 -4.6451 1.7487 33 1 5.7914 -6.8603 -0.6940 34 1 7.6482 -7.3658 -2.2248 35 1 8.1232 -5.8776 -4.1248 36 1 4.8752 -3.3546 -2.9867 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368858615.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:07 Heat of formation + Delta-G solvation = -17.536862 kcal Electronic energy + Delta-G solvation = -23179.442979 eV Core-core repulsion = 19476.651791 eV Total energy + Delta-G solvation = -3702.791188 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.074 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.97598 -41.20634 -40.13947 -39.45118 -36.59696 -34.07854 -33.55281 -31.72691 -31.54273 -29.36999 -27.97077 -26.48471 -25.91761 -23.84529 -22.97338 -21.24245 -20.17390 -19.13319 -18.85526 -18.11770 -17.80153 -17.24850 -17.15333 -16.70095 -16.52449 -16.46552 -15.96558 -15.84910 -15.36796 -14.88503 -14.55579 -14.47081 -14.04562 -13.98366 -13.84527 -13.38458 -13.31321 -13.14357 -13.00918 -12.90490 -12.66851 -12.47922 -12.26714 -12.20633 -12.09900 -11.00472 -10.87941 -10.64933 -10.31956 -10.17410 -9.90686 -9.64143 -9.18967 -8.34612 -5.98822 -0.81450 0.11406 0.28193 0.42067 0.62709 1.36671 1.37754 1.48269 1.81776 2.07526 2.28046 2.61852 2.88703 3.08291 3.16383 3.20422 3.66283 3.82709 4.00528 4.03972 4.11934 4.23532 4.30378 4.34112 4.47806 4.61588 4.73343 4.76610 5.00111 5.03001 5.04911 5.07599 5.21112 5.33316 5.37420 5.43192 5.79519 6.10668 6.50646 6.83866 7.18866 7.48390 8.07420 8.68406 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.014431 B = 0.003456 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.778961 B = 8099.630590 C = 9613.418902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.468 5.468 3 C -0.344 4.344 4 H 0.063 0.937 5 C 0.000 4.000 6 N -0.895 5.895 7 Si 0.985 3.015 8 H -0.269 1.269 9 H -0.266 1.266 10 H -0.279 1.279 11 C 0.444 3.556 12 O -0.620 6.620 13 C -0.052 4.052 14 C 0.069 3.931 15 C -0.240 4.240 16 S 0.150 5.850 17 C 0.076 3.924 18 C -0.009 4.009 19 C -0.104 4.104 20 C -0.072 4.072 21 C -0.131 4.131 22 C 0.079 3.921 23 F -0.149 7.149 24 C -0.136 4.136 25 N -0.470 5.470 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.274 0.726 30 H 0.112 0.888 31 H 0.127 0.873 32 H 0.212 0.788 33 H 0.156 0.844 34 H 0.188 0.812 35 H 0.170 0.830 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.560 -21.737 -3.454 22.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.188 5.188 3 C -0.472 4.472 4 H 0.080 0.920 5 C -0.202 4.202 6 N -0.534 5.534 7 Si 0.809 3.191 8 H -0.195 1.195 9 H -0.190 1.190 10 H -0.205 1.205 11 C 0.233 3.767 12 O -0.506 6.506 13 C -0.095 4.095 14 C -0.064 4.064 15 C -0.379 4.379 16 S 0.407 5.593 17 C -0.199 4.199 18 C -0.013 4.013 19 C -0.125 4.125 20 C -0.089 4.089 21 C -0.151 4.151 22 C 0.060 3.940 23 F -0.128 7.128 24 C -0.158 4.158 25 N -0.183 5.183 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.130 0.870 31 H 0.145 0.855 32 H 0.229 0.771 33 H 0.174 0.826 34 H 0.205 0.795 35 H 0.188 0.812 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.352 -22.120 -3.273 23.246 hybrid contribution -0.592 2.591 -0.259 2.670 sum 5.760 -19.529 -3.532 20.665 Atomic orbital electron populations 1.21460 0.79245 1.00814 1.00775 1.43809 1.06764 1.04414 1.63787 1.19482 1.00230 0.86430 1.41076 0.91952 1.26013 0.97109 1.02667 0.94400 1.70037 1.19583 1.30750 1.33012 0.85128 0.78005 0.77195 0.78783 1.19454 1.18986 1.20506 1.20814 0.88013 0.85941 0.81933 1.90505 1.16156 1.87835 1.56119 1.20237 0.95742 0.87501 1.05987 1.19716 0.96461 0.97535 0.92691 1.27220 1.05824 0.99049 1.05803 1.84035 1.25540 1.26125 1.23623 1.26046 1.00000 0.94485 0.99354 1.17808 0.93692 0.96667 0.93172 1.21536 0.95058 0.94842 1.01027 1.21391 0.95936 0.99877 0.91719 1.21676 1.00298 0.92585 1.00495 1.17831 0.97425 0.91984 0.86740 1.91482 1.93389 1.72390 1.55510 1.21173 0.98272 1.00829 0.95530 1.66194 1.04983 1.18996 1.28147 0.93405 0.92607 0.91397 0.91671 0.87028 0.85543 0.77133 0.82621 0.79511 0.81237 0.87035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.34 8.44 127.77 1.08 6.42 16 2 N -0.47 -25.21 3.01 -658.89 -1.98 -27.19 16 3 C -0.34 -20.58 9.24 84.04 0.78 -19.80 16 4 H 0.06 4.04 7.45 -2.91 -0.02 4.02 16 5 C 0.00 -0.01 5.04 84.93 0.43 0.42 16 6 N -0.90 -48.46 10.83 21.66 0.23 -48.22 16 7 Si 0.99 44.26 29.57 68.60 2.03 46.28 16 8 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 9 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 C 0.44 23.01 7.59 87.66 0.67 23.68 16 12 O -0.62 -37.81 15.14 -3.08 -0.05 -37.86 16 13 C -0.05 -1.95 4.78 29.10 0.14 -1.81 16 14 C 0.07 2.50 5.61 41.61 0.23 2.74 16 15 C -0.24 -6.60 11.02 66.80 0.74 -5.86 16 16 S 0.15 3.51 22.40 -56.49 -1.27 2.25 16 17 C 0.08 2.46 7.35 87.48 0.64 3.10 16 18 C -0.01 -0.27 5.87 -20.10 -0.12 -0.38 16 19 C -0.10 -1.89 9.60 22.52 0.22 -1.67 16 20 C -0.07 -0.92 10.03 22.22 0.22 -0.70 16 21 C -0.13 -2.19 10.02 22.37 0.22 -1.97 16 22 C 0.08 2.08 7.29 22.34 0.16 2.24 16 23 F -0.15 -4.30 17.26 44.97 0.78 -3.52 16 24 C -0.14 -4.30 9.66 22.57 0.22 -4.08 16 25 N -0.47 -18.92 9.22 -177.79 -1.64 -20.56 16 26 H 0.05 2.13 7.83 -2.39 -0.02 2.11 16 27 H 0.06 2.66 6.80 -2.39 -0.02 2.64 16 28 H 0.07 2.38 6.61 -2.39 -0.02 2.37 16 29 H 0.27 13.85 8.31 -92.70 -0.77 13.08 16 30 H 0.11 3.70 7.41 -2.39 -0.02 3.68 16 31 H 0.13 3.84 7.97 -2.39 -0.02 3.83 16 32 H 0.21 4.14 8.06 -2.91 -0.02 4.12 16 33 H 0.16 1.98 7.30 -2.91 -0.02 1.95 16 34 H 0.19 0.68 8.06 -2.91 -0.02 0.65 16 35 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 36 H 0.11 4.31 7.82 -2.91 -0.02 4.28 16 Total: -1.00 -80.45 331.96 4.86 -75.59 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 1.13 Total: 10.92 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 5.63 Total: 2.31 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -3.39 Total: -95.97 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -0.05 Total: -37.86 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 0.78 Total: -3.52 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: 3.51 SS G_CDS: -1.27 Total: 2.25 kcal Total: -80.45 4.86 -75.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368858615.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.050 kcal (2) G-P(sol) polarization free energy of solvation -80.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds