Wall clock time and date at job start Tue Mar 31 2020 12:50:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86804 * 119.99420 * 2 1
4 4 H 1.48500 * 109.47165 * 270.00053 * 3 2 1
5 5 H 1.48502 * 109.47054 * 30.00090 * 3 2 1
6 6 H 1.48505 * 109.46864 * 149.99991 * 3 2 1
7 7 C 1.37871 * 120.00585 * 180.02562 * 2 1 3
8 8 H 1.08002 * 119.99944 * 359.97438 * 7 2 1
9 9 C 1.50700 * 119.99959 * 180.02562 * 7 2 1
10 10 C 1.53000 * 109.46939 * 179.97438 * 9 7 2
11 11 C 1.53001 * 109.47261 * 179.97438 * 10 9 7
12 12 S 1.81402 * 109.47082 * 180.02562 * 11 10 9
13 13 C 1.81402 * 102.99615 * 179.97438 * 12 11 10
14 14 C 1.50703 * 109.46920 * 179.97438 * 13 12 11
15 15 C 1.38290 * 119.97179 * 269.97461 * 14 13 12
16 16 C 1.38246 * 120.11140 * 180.02562 * 15 14 13
17 17 C 1.38169 * 120.05594 * 359.67998 * 16 15 14
18 18 C 1.38709 * 119.93896 * 0.61802 * 17 16 15
19 19 O 1.35905 * 120.05570 * 179.67527 * 18 17 16
20 20 C 1.42901 * 116.99604 * 359.72908 * 19 18 17
21 21 F 1.39904 * 109.47113 * 60.00000 * 20 19 18
22 22 F 1.39901 * 109.46966 * 180.02562 * 20 19 18
23 23 F 1.39902 * 109.46987 * 299.99856 * 20 19 18
24 24 C 1.38119 * 119.97324 * 89.99986 * 14 13 12
25 25 H 0.96996 * 120.00662 * 0.02562 * 1 2 3
26 26 H 1.08994 * 109.47651 * 59.99870 * 9 7 2
27 27 H 1.08996 * 109.46926 * 299.99509 * 9 7 2
28 28 H 1.09001 * 109.47552 * 59.99763 * 10 9 7
29 29 H 1.09007 * 109.47373 * 299.99887 * 10 9 7
30 30 H 1.08994 * 109.47463 * 59.99959 * 11 10 9
31 31 H 1.08996 * 109.46793 * 299.99794 * 11 10 9
32 32 H 1.09001 * 109.47142 * 60.00289 * 13 12 11
33 33 H 1.08994 * 109.47337 * 299.99492 * 13 12 11
34 34 H 1.08001 * 119.94690 * 0.02562 * 15 14 13
35 35 H 1.07997 * 119.97049 * 179.97438 * 16 15 14
36 36 H 1.07997 * 120.02760 * 180.29730 * 17 16 15
37 37 H 1.08006 * 120.02943 * 0.02562 * 24 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2490 1.6179 0.0000
4 1 2.4965 2.0466 -1.4001
5 1 1.4464 2.6527 0.7001
6 1 3.5466 1.4404 0.7001
7 6 2.0046 -1.1939 -0.0005
8 1 1.4647 -2.1293 -0.0005
9 6 3.5117 -1.1938 0.0000
10 6 4.0218 -2.6362 -0.0001
11 6 5.5518 -2.6361 -0.0001
12 16 6.1565 -4.3464 -0.0010
13 6 7.9590 -4.1417 -0.0018
14 6 8.6183 -5.4969 -0.0020
15 6 8.9216 -6.1178 1.1959
16 6 9.5270 -7.3606 1.1991
17 6 9.8245 -7.9885 0.0049
18 6 9.5270 -7.3651 -1.1980
19 8 9.8247 -7.9776 -2.3740
20 6 10.4491 -9.2607 -2.2973
21 9 9.6105 -10.1473 -1.6133
22 9 10.6840 -9.7430 -3.5894
23 9 11.6647 -9.1476 -1.6141
24 6 8.9198 -6.1174 -1.1985
25 1 -0.4851 0.8400 -0.0004
26 1 3.8747 -0.6805 0.8904
27 1 3.8752 -0.6794 -0.8895
28 1 3.6588 -3.1500 -0.8903
29 1 3.6581 -3.1503 0.8897
30 1 5.9152 -2.1224 0.8898
31 1 5.9150 -2.1223 -0.8901
32 1 8.2624 -3.5906 0.8883
33 1 8.2616 -3.5900 -0.8917
34 1 8.6851 -5.6309 2.1305
35 1 9.7631 -7.8433 2.1360
36 1 10.2931 -8.9616 0.0079
37 1 8.6835 -5.6318 -2.1338
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000593201031.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:50:48
Heat of formation + Delta-G solvation = -188.138521 kcal
Electronic energy + Delta-G solvation = -23020.770832 eV
Core-core repulsion = 18859.892614 eV
Total energy + Delta-G solvation = -4160.878218 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 320.080 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-50.86490 -48.58235 -48.45932 -40.67615 -38.30521 -34.62263 -33.08270 -32.10641
-30.95792 -28.20657 -27.49296 -26.33039 -23.35226 -23.19125 -22.30159 -20.27025
-19.71617 -19.57932 -19.35362 -17.18904 -16.79203 -16.66070 -15.97112 -15.77468
-15.62856 -15.23575 -14.94820 -14.87304 -14.83384 -14.72125 -14.61718 -14.52190
-14.40163 -13.89601 -13.77000 -13.50228 -13.01363 -12.70318 -12.30329 -12.19204
-12.05086 -11.94459 -11.48912 -11.26418 -10.89467 -10.21923 -9.94615 -9.78299
-9.59722 -9.25380 -9.21962 -8.91163 -8.57071 -7.57791 -6.06823 -4.05562
0.58438 0.86542 1.05960 1.85848 2.40056 2.69595 3.26961 3.27851
3.34721 3.35422 3.37687 3.58712 4.16840 4.23134 4.41875 4.49217
4.58946 4.81968 4.89058 5.14603 5.25405 5.25783 5.34545 5.43477
5.50793 5.61272 5.88365 5.92968 5.95150 6.10764 6.36975 6.46493
6.50490 6.78022 7.21533 7.33777 7.74191 8.50507 8.98091 9.54718
11.06557
Molecular weight = 320.08amu
Principal moments of inertia in cm(-1)
A = 0.030632 B = 0.001953 C = 0.001914
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 913.853602 B =14332.156039 C =14622.896421
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.902 5.902
2 C 0.066 3.934
3 Si 0.881 3.119
4 H -0.277 1.277
5 H -0.287 1.287
6 H -0.266 1.266
7 C -0.521 4.521
8 H 0.073 0.927
9 C -0.007 4.007
10 C -0.087 4.087
11 C -0.081 4.081
12 S -0.256 6.256
13 C -0.056 4.056
14 C -0.029 4.029
15 C -0.117 4.117
16 C -0.078 4.078
17 C -0.190 4.190
18 C 0.103 3.897
19 O -0.309 6.309
20 C 0.604 3.396
21 F -0.164 7.164
22 F -0.132 7.132
23 F -0.166 7.166
24 C -0.106 4.106
25 H 0.263 0.737
26 H 0.017 0.983
27 H 0.013 0.987
28 H 0.064 0.936
29 H 0.064 0.936
30 H 0.077 0.923
31 H 0.077 0.923
32 H 0.094 0.906
33 H 0.093 0.907
34 H 0.135 0.865
35 H 0.135 0.865
36 H 0.133 0.867
37 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 26.745 -17.688 -0.955 32.079
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.541 5.541
2 C -0.135 4.135
3 Si 0.708 3.292
4 H -0.203 1.203
5 H -0.213 1.213
6 H -0.191 1.191
7 C -0.560 4.560
8 H 0.091 0.909
9 C -0.046 4.046
10 C -0.126 4.126
11 C -0.229 4.229
12 S -0.026 6.026
13 C -0.203 4.203
14 C -0.030 4.030
15 C -0.137 4.137
16 C -0.096 4.096
17 C -0.209 4.209
18 C 0.061 3.939
19 O -0.229 6.229
20 C 0.513 3.487
21 F -0.146 7.146
22 F -0.113 7.113
23 F -0.148 7.148
24 C -0.127 4.127
25 H 0.073 0.927
26 H 0.035 0.965
27 H 0.031 0.969
28 H 0.082 0.918
29 H 0.083 0.917
30 H 0.096 0.904
31 H 0.096 0.904
32 H 0.113 0.887
33 H 0.111 0.889
34 H 0.153 0.847
35 H 0.153 0.847
36 H 0.151 0.849
37 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges 25.969 -18.451 -1.139 31.877
hybrid contribution 1.193 1.677 -0.050 2.058
sum 27.161 -16.774 -1.189 31.946
Atomic orbital electron populations
1.69911 1.06288 1.26927 1.50962 1.25034 0.94751 0.99169 0.94558
0.86769 0.80306 0.83635 0.78497 1.20274 1.21336 1.19074 1.21105
0.89274 0.94604 1.50974 0.90896 1.19570 0.97324 0.91360 0.96377
1.21279 0.88323 1.00545 1.02485 1.23688 1.02206 0.92565 1.04407
1.87242 1.01666 1.15585 1.98078 1.22290 0.95652 0.96224 1.06155
1.19064 0.96562 0.94986 0.92431 1.21158 0.99060 0.95476 0.98002
1.20935 0.96671 0.94542 0.97433 1.21527 1.05601 1.01601 0.92169
1.18584 0.99711 0.93383 0.82232 1.86427 1.75048 1.29390 1.32062
1.19345 0.75691 0.78997 0.74631 1.93312 1.71729 1.69775 1.79819
1.93314 1.94017 1.86697 1.37286 1.93300 1.46030 1.95567 1.79929
1.20270 1.00529 0.92457 0.99416 0.92680 0.96487 0.96911 0.91756
0.91729 0.90424 0.90433 0.88727 0.88883 0.84749 0.84685 0.84944
0.84065
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16
2 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16
3 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16
4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16
5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
6 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16
7 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 16
8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16
9 C -0.01 -0.16 4.04 -27.88 -0.11 -0.28 16
10 C -0.09 -1.70 5.16 -26.73 -0.14 -1.84 16
11 C -0.08 -1.24 5.94 37.16 0.22 -1.02 16
12 S -0.26 -3.58 21.72 -107.50 -2.33 -5.91 16
13 C -0.06 -0.56 6.07 36.01 0.22 -0.34 16
14 C -0.03 -0.29 5.14 -104.64 -0.54 -0.82 16
15 C -0.12 -1.02 9.70 -39.56 -0.38 -1.40 16
16 C -0.08 -0.62 10.04 -39.60 -0.40 -1.01 16
17 C -0.19 -1.67 8.26 -39.43 -0.33 -2.00 16
18 C 0.10 1.03 6.48 -39.22 -0.25 0.77 16
19 O -0.31 -3.04 10.37 -19.44 -0.20 -3.24 16
20 C 0.60 5.03 3.42 101.05 0.35 5.38 16
21 F -0.16 -1.39 15.55 2.25 0.04 -1.35 16
22 F -0.13 -1.07 17.53 2.25 0.04 -1.03 16
23 F -0.17 -1.31 15.58 2.25 0.04 -1.27 16
24 C -0.11 -1.07 9.64 -39.43 -0.38 -1.45 16
25 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16
26 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16
27 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16
28 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16
29 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16
30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16
31 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16
32 H 0.09 0.83 8.08 -51.92 -0.42 0.41 16
33 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16
34 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16
35 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16
36 H 0.13 1.01 5.10 -52.49 -0.27 0.74 16
37 H 0.14 1.30 8.06 -52.48 -0.42 0.87 16
LS Contribution 341.03 15.07 5.14 5.14
Total: -1.00 -30.63 341.03 -7.78 -38.40
By element:
Atomic # 1 Polarization: 1.25 SS G_CDS: -4.42 Total: -3.17 kcal
Atomic # 6 Polarization: -15.15 SS G_CDS: -2.17 Total: -17.32 kcal
Atomic # 7 Polarization: -27.78 SS G_CDS: 0.77 Total: -27.01 kcal
Atomic # 8 Polarization: -3.04 SS G_CDS: -0.20 Total: -3.24 kcal
Atomic # 9 Polarization: -3.77 SS G_CDS: 0.11 Total: -3.66 kcal
Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal
Atomic # 16 Polarization: -3.58 SS G_CDS: -2.33 Total: -5.91 kcal
Total LS contribution 5.14 Total: 5.14 kcal
Total: -30.63 -7.78 -38.40 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000593201031.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -149.736 kcal
(2) G-P(sol) polarization free energy of solvation -30.625 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.361 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.402 kcal
(6) G-S(sol) free energy of system = (1) + (5) -188.139 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds