Wall clock time and date at job start Tue Mar 31 2020 12:50:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86804 * 119.99420 * 2 1
4 4 H 1.48500 * 109.47165 * 270.00053 * 3 2 1
5 5 H 1.48502 * 109.47054 * 30.00090 * 3 2 1
6 6 H 1.48505 * 109.46864 * 149.99991 * 3 2 1
7 7 C 1.37871 * 120.00585 * 180.02562 * 2 1 3
8 8 H 1.08002 * 119.99944 * 359.97438 * 7 2 1
9 9 C 1.50700 * 119.99959 * 180.02562 * 7 2 1
10 10 C 1.53000 * 109.46939 * 179.97438 * 9 7 2
11 11 C 1.53001 * 109.47261 * 179.97438 * 10 9 7
12 12 S 1.81402 * 109.47082 * 180.02562 * 11 10 9
13 13 C 1.81402 * 102.99615 * 179.97438 * 12 11 10
14 14 C 1.50703 * 109.46920 * 179.97438 * 13 12 11
15 15 C 1.38290 * 119.97179 * 269.97461 * 14 13 12
16 16 C 1.38246 * 120.11140 * 180.02562 * 15 14 13
17 17 C 1.38169 * 120.05594 * 359.67998 * 16 15 14
18 18 C 1.38709 * 119.93896 * 0.61802 * 17 16 15
19 19 O 1.35905 * 120.05570 * 179.67527 * 18 17 16
20 20 C 1.42901 * 116.99604 * 359.72908 * 19 18 17
21 21 F 1.39904 * 109.47113 * 60.00000 * 20 19 18
22 22 F 1.39901 * 109.46966 * 180.02562 * 20 19 18
23 23 F 1.39902 * 109.46987 * 299.99856 * 20 19 18
24 24 C 1.38119 * 119.97324 * 89.99986 * 14 13 12
25 25 H 0.96996 * 120.00662 * 0.02562 * 1 2 3
26 26 H 1.08994 * 109.47651 * 59.99870 * 9 7 2
27 27 H 1.08996 * 109.46926 * 299.99509 * 9 7 2
28 28 H 1.09001 * 109.47552 * 59.99763 * 10 9 7
29 29 H 1.09007 * 109.47373 * 299.99887 * 10 9 7
30 30 H 1.08994 * 109.47463 * 59.99959 * 11 10 9
31 31 H 1.08996 * 109.46793 * 299.99794 * 11 10 9
32 32 H 1.09001 * 109.47142 * 60.00289 * 13 12 11
33 33 H 1.08994 * 109.47337 * 299.99492 * 13 12 11
34 34 H 1.08001 * 119.94690 * 0.02562 * 15 14 13
35 35 H 1.07997 * 119.97049 * 179.97438 * 16 15 14
36 36 H 1.07997 * 120.02760 * 180.29730 * 17 16 15
37 37 H 1.08006 * 120.02943 * 0.02562 * 24 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2490 1.6179 0.0000
4 1 2.4965 2.0466 -1.4001
5 1 1.4464 2.6527 0.7001
6 1 3.5466 1.4404 0.7001
7 6 2.0046 -1.1939 -0.0005
8 1 1.4647 -2.1293 -0.0005
9 6 3.5117 -1.1938 0.0000
10 6 4.0218 -2.6362 -0.0001
11 6 5.5518 -2.6361 -0.0001
12 16 6.1565 -4.3464 -0.0010
13 6 7.9590 -4.1417 -0.0018
14 6 8.6183 -5.4969 -0.0020
15 6 8.9216 -6.1178 1.1959
16 6 9.5270 -7.3606 1.1991
17 6 9.8245 -7.9885 0.0049
18 6 9.5270 -7.3651 -1.1980
19 8 9.8247 -7.9776 -2.3740
20 6 10.4491 -9.2607 -2.2973
21 9 9.6105 -10.1473 -1.6133
22 9 10.6840 -9.7430 -3.5894
23 9 11.6647 -9.1476 -1.6141
24 6 8.9198 -6.1174 -1.1985
25 1 -0.4851 0.8400 -0.0004
26 1 3.8747 -0.6805 0.8904
27 1 3.8752 -0.6794 -0.8895
28 1 3.6588 -3.1500 -0.8903
29 1 3.6581 -3.1503 0.8897
30 1 5.9152 -2.1224 0.8898
31 1 5.9150 -2.1223 -0.8901
32 1 8.2624 -3.5906 0.8883
33 1 8.2616 -3.5900 -0.8917
34 1 8.6851 -5.6309 2.1305
35 1 9.7631 -7.8433 2.1360
36 1 10.2931 -8.9616 0.0079
37 1 8.6835 -5.6318 -2.1338
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000593201031.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:50:47
Heat of formation + Delta-G solvation = -204.002201 kcal
Electronic energy + Delta-G solvation = -23021.458733 eV
Core-core repulsion = 18859.892614 eV
Total energy + Delta-G solvation = -4161.566118 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 320.080 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-51.51885 -49.23475 -49.11008 -41.35799 -38.99104 -36.38215 -34.14774 -33.77815
-31.62927 -29.92630 -28.31169 -27.00882 -25.05929 -23.88454 -23.08182 -21.94678
-20.42902 -20.23758 -20.03453 -18.94916 -17.83673 -17.35124 -17.03206 -16.49951
-16.41433 -16.27529 -16.17772 -15.88415 -15.61853 -15.52951 -15.39510 -15.27531
-15.18256 -15.09208 -14.67763 -14.48399 -14.28465 -13.96575 -13.79504 -13.42114
-13.11877 -12.85198 -12.71271 -12.63908 -12.20335 -11.82375 -11.59154 -11.54449
-11.35338 -10.91171 -10.76378 -9.95707 -9.61614 -8.65048 -8.28902 -6.34273
-0.17070 0.19108 0.39279 0.92367 1.37587 1.39912 1.51725 1.67704
1.73383 2.37183 2.59554 2.69215 2.92994 3.06265 3.46723 3.59401
3.83155 3.92175 4.06644 4.07061 4.18927 4.21385 4.49515 4.55524
4.57841 4.78336 4.85215 4.87149 4.96757 5.01162 5.23103 5.28808
5.42938 5.45801 5.53870 5.64986 5.84648 6.27664 6.73886 7.30240
8.88138
Molecular weight = 320.08amu
Principal moments of inertia in cm(-1)
A = 0.030632 B = 0.001953 C = 0.001914
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 913.853602 B =14332.156039 C =14622.896421
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.953 5.953
2 C 0.000 4.000
3 Si 0.957 3.043
4 H -0.266 1.266
5 H -0.285 1.285
6 H -0.240 1.240
7 C -0.537 4.537
8 H 0.027 0.973
9 C -0.005 4.005
10 C -0.080 4.080
11 C -0.070 4.070
12 S -0.295 6.295
13 C -0.039 4.039
14 C -0.041 4.041
15 C -0.119 4.119
16 C -0.076 4.076
17 C -0.193 4.193
18 C 0.086 3.914
19 O -0.320 6.320
20 C 0.608 3.392
21 F -0.165 7.165
22 F -0.131 7.131
23 F -0.162 7.162
24 C -0.117 4.117
25 H 0.266 0.734
26 H 0.027 0.973
27 H 0.025 0.975
28 H 0.048 0.952
29 H 0.050 0.950
30 H 0.092 0.908
31 H 0.090 0.910
32 H 0.114 0.886
33 H 0.105 0.895
34 H 0.151 0.849
35 H 0.163 0.837
36 H 0.142 0.858
37 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 29.731 -16.974 -0.264 34.236
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.594 5.594
2 C -0.197 4.197
3 Si 0.779 3.221
4 H -0.191 1.191
5 H -0.211 1.211
6 H -0.163 1.163
7 C -0.575 4.575
8 H 0.045 0.955
9 C -0.044 4.044
10 C -0.119 4.119
11 C -0.218 4.218
12 S -0.064 6.064
13 C -0.186 4.186
14 C -0.043 4.043
15 C -0.138 4.138
16 C -0.094 4.094
17 C -0.212 4.212
18 C 0.045 3.955
19 O -0.241 6.241
20 C 0.518 3.482
21 F -0.147 7.147
22 F -0.112 7.112
23 F -0.144 7.144
24 C -0.138 4.138
25 H 0.075 0.925
26 H 0.046 0.954
27 H 0.043 0.957
28 H 0.067 0.933
29 H 0.069 0.931
30 H 0.111 0.889
31 H 0.109 0.891
32 H 0.132 0.868
33 H 0.123 0.877
34 H 0.168 0.832
35 H 0.180 0.820
36 H 0.160 0.840
37 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges 28.965 -17.752 -0.449 33.975
hybrid contribution 0.261 1.283 -0.261 1.335
sum 29.226 -16.469 -0.711 33.555
Atomic orbital electron populations
1.70083 1.08496 1.28259 1.52564 1.26115 0.95697 1.03876 0.93997
0.85569 0.79607 0.77634 0.79277 1.19094 1.21130 1.16324 1.21499
0.92307 0.93042 1.50647 0.95477 1.19503 0.93683 0.94068 0.97108
1.21039 0.91793 0.97879 1.01162 1.23409 0.98748 0.93840 1.05802
1.87380 1.06134 1.14689 1.98239 1.22322 0.91641 0.96853 1.07752
1.19119 0.97226 0.95141 0.92801 1.21433 0.98449 0.95700 0.98254
1.21280 0.95665 0.94254 0.98215 1.21751 1.05306 1.01996 0.92161
1.18766 1.00412 0.93720 0.82640 1.86400 1.75308 1.29942 1.32401
1.19247 0.75680 0.78619 0.74665 1.93309 1.71808 1.69727 1.79829
1.93315 1.94003 1.86640 1.37292 1.93305 1.45752 1.95531 1.79842
1.20396 1.00843 0.92746 0.99783 0.92478 0.95444 0.95698 0.93276
0.93080 0.88893 0.89123 0.86807 0.87657 0.83155 0.81964 0.84046
0.83971
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -60.37 13.96 21.45 0.30 -60.08 16
2 C 0.00 -0.02 5.47 84.65 0.46 0.44 16
3 Si 0.96 43.52 27.47 68.60 1.88 45.40 16
4 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16
5 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16
6 H -0.24 -9.85 6.54 99.48 0.65 -9.20 16
7 C -0.54 -31.23 9.66 25.60 0.25 -30.98 16
8 H 0.03 1.75 7.99 -2.91 -0.02 1.73 16
9 C 0.00 -0.20 4.04 29.85 0.12 -0.08 16
10 C -0.08 -3.09 5.16 30.59 0.16 -2.94 16
11 C -0.07 -2.00 5.94 71.98 0.43 -1.57 16
12 S -0.29 -7.79 21.72 -56.49 -1.23 -9.01 16
13 C -0.04 -0.67 6.07 71.24 0.43 -0.24 16
14 C -0.04 -0.73 5.14 -19.88 -0.10 -0.83 16
15 C -0.12 -1.75 9.70 22.28 0.22 -1.53 16
16 C -0.08 -1.01 10.04 22.26 0.22 -0.79 16
17 C -0.19 -3.05 8.26 22.37 0.18 -2.86 16
18 C 0.09 1.63 6.48 22.51 0.15 1.77 16
19 O -0.32 -6.07 10.37 -92.48 -0.96 -7.03 16
20 C 0.61 9.59 3.42 113.37 0.39 9.98 16
21 F -0.16 -2.62 15.55 44.97 0.70 -1.92 16
22 F -0.13 -2.04 17.53 44.97 0.79 -1.25 16
23 F -0.16 -2.36 15.58 44.97 0.70 -1.66 16
24 C -0.12 -2.21 9.64 22.37 0.22 -1.99 16
25 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16
26 H 0.03 1.19 7.20 -2.39 -0.02 1.18 16
27 H 0.02 1.07 7.57 -2.39 -0.02 1.06 16
28 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16
29 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16
30 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16
31 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16
32 H 0.11 1.57 8.08 -2.39 -0.02 1.55 16
33 H 0.10 1.59 8.08 -2.39 -0.02 1.57 16
34 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16
35 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16
36 H 0.14 1.91 5.10 -2.91 -0.01 1.89 16
37 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16
Total: -1.00 -67.77 341.03 6.34 -61.43
By element:
Atomic # 1 Polarization: 4.70 SS G_CDS: 1.03 Total: 5.74 kcal
Atomic # 6 Polarization: -34.75 SS G_CDS: 3.12 Total: -31.63 kcal
Atomic # 7 Polarization: -60.37 SS G_CDS: 0.30 Total: -60.08 kcal
Atomic # 8 Polarization: -6.07 SS G_CDS: -0.96 Total: -7.03 kcal
Atomic # 9 Polarization: -7.01 SS G_CDS: 2.19 Total: -4.82 kcal
Atomic # 14 Polarization: 43.52 SS G_CDS: 1.88 Total: 45.40 kcal
Atomic # 16 Polarization: -7.79 SS G_CDS: -1.23 Total: -9.01 kcal
Total: -67.77 6.34 -61.43 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000593201031.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -142.568 kcal
(2) G-P(sol) polarization free energy of solvation -67.774 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.342 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.340 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.434 kcal
(6) G-S(sol) free energy of system = (1) + (5) -204.002 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds