Wall clock time and date at job start Tue Mar 31 2020 12:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47544 * 2 1 4 4 C 1.50700 * 109.47096 * 120.00086 * 2 1 3 5 5 H 1.08003 * 120.00276 * 119.99373 * 4 2 1 6 6 C 1.37882 * 120.00054 * 300.00105 * 4 2 1 7 7 N 1.31512 * 119.99842 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 119.99712 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.47135 * 90.00428 * 8 6 4 10 10 H 1.48504 * 109.47203 * 210.00188 * 8 6 4 11 11 H 1.48496 * 109.47403 * 330.00435 * 8 6 4 12 12 N 1.46499 * 109.47258 * 239.99749 * 2 1 3 13 13 C 1.34784 * 119.99893 * 85.00288 * 12 2 1 14 14 O 1.21597 * 119.99617 * 359.97438 * 13 12 2 15 15 C 1.47505 * 120.00128 * 179.72594 * 13 12 2 16 16 C 1.36624 * 125.77144 * 179.97438 * 15 13 12 17 17 N 1.35067 * 106.79788 * 180.02562 * 16 15 13 18 18 C 1.40246 * 126.60982 * 180.02562 * 17 16 15 19 19 C 1.38825 * 120.05733 * 359.73171 * 18 17 16 20 20 C 1.38109 * 119.94624 * 179.70109 * 19 18 17 21 21 C 1.38383 * 120.05455 * 0.59123 * 20 19 18 22 22 Cl 1.73600 * 119.94934 * 179.70130 * 21 20 19 23 23 C 1.38390 * 120.10273 * 359.67882 * 21 20 19 24 24 C 1.38105 * 120.05333 * 0.02562 * 23 21 20 25 25 N 1.40211 * 106.77602 * 0.02562 * 17 16 15 26 26 N 1.28762 * 108.38402 * 359.72709 * 25 17 16 27 27 H 1.09003 * 109.47025 * 59.99700 * 1 2 3 28 28 H 1.09002 * 109.47544 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47281 * 300.00191 * 1 2 3 30 30 H 0.96997 * 119.99740 * 179.97438 * 7 6 4 31 31 H 0.97005 * 120.00261 * 265.00500 * 12 2 1 32 32 H 1.08003 * 126.59764 * 0.03099 * 16 15 13 33 33 H 1.07999 * 120.02057 * 359.97438 * 19 18 17 34 34 H 1.08001 * 119.97207 * 180.27294 * 20 19 18 35 35 H 1.07999 * 119.97022 * 179.97438 * 23 21 20 36 36 H 1.08006 * 120.02612 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 2.1371 -0.8597 3.5565 8 14 0.6258 1.2797 2.6541 9 1 -0.8021 0.8744 2.6993 10 1 0.9771 1.9953 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3572 14 8 1.8575 1.1614 -2.4118 15 6 2.6445 -0.7121 -3.5600 16 6 2.8199 -0.1483 -4.7921 17 7 3.2873 -1.1215 -5.6037 18 6 3.6105 -0.9938 -6.9625 19 6 3.4532 0.2278 -7.6028 20 6 3.7781 0.3525 -8.9394 21 6 4.2485 -0.7421 -9.6433 22 17 4.6486 -0.5842 -11.3252 23 6 4.4009 -1.9623 -9.0085 24 6 4.0831 -2.0904 -7.6706 25 7 3.3871 -2.2839 -4.8260 26 7 3.0060 -2.0050 -3.6281 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.9031 -0.5281 4.4375 31 1 2.2490 -1.6319 -1.1526 32 1 2.6227 0.8780 -5.0645 33 1 3.0813 1.0811 -7.0551 34 1 3.6600 1.3038 -9.4368 35 1 4.7678 -2.8153 -9.5601 36 1 4.2026 -3.0429 -7.1756 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604573956.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:08 Heat of formation + Delta-G solvation = 91.185936 kcal Electronic energy + Delta-G solvation = -22780.110822 eV Core-core repulsion = 19099.910464 eV Total energy + Delta-G solvation = -3680.200358 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.078 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.58813 -39.96661 -38.82564 -37.14238 -35.08369 -34.80248 -32.39790 -32.06948 -31.13560 -30.33991 -29.36031 -25.23740 -24.75968 -24.43390 -22.96600 -21.85828 -20.95994 -19.83202 -19.03534 -17.64391 -16.92353 -16.35380 -16.14326 -15.89891 -15.61372 -15.36676 -14.61288 -14.51340 -14.34904 -14.23348 -13.91804 -13.23053 -13.05122 -12.93376 -12.57965 -12.52235 -12.19811 -12.07811 -11.84343 -11.49286 -11.41935 -11.30790 -11.15514 -10.81390 -10.18055 -9.83783 -9.82684 -9.64015 -9.43033 -9.22672 -8.88449 -8.74705 -8.19526 -6.18462 -4.21203 -0.09499 0.52511 1.29214 1.45382 1.68743 1.74568 2.92625 3.24651 3.36463 3.40108 3.60730 3.64983 3.91021 4.04519 4.14890 4.32901 4.36373 4.43721 4.69539 4.77668 4.94687 4.97524 5.15661 5.22714 5.23502 5.48951 5.60050 5.79537 5.81773 6.31261 6.31662 6.37074 6.55002 6.82918 7.16974 7.23046 7.49519 7.71140 8.14430 8.51109 8.73128 8.85699 9.41175 10.93691 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.042922 B = 0.002173 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.196106 B =12880.880617 C =13328.585350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.236 3.764 3 H 0.052 0.948 4 C -0.535 4.535 5 H 0.082 0.918 6 C 0.078 3.922 7 N -0.891 5.891 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.261 1.261 12 N -0.679 5.679 13 C 0.589 3.411 14 O -0.552 6.552 15 C -0.076 4.076 16 C 0.086 3.914 17 N -0.321 5.321 18 C 0.149 3.851 19 C -0.115 4.115 20 C -0.084 4.084 21 C -0.037 4.037 22 Cl -0.060 7.060 23 C -0.087 4.087 24 C -0.094 4.094 25 N -0.059 5.059 26 N -0.188 5.188 27 H 0.037 0.963 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.267 0.733 31 H 0.404 0.596 32 H 0.208 0.792 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.627 0.582 -29.137 29.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.133 3.867 3 H 0.069 0.931 4 C -0.573 4.573 5 H 0.100 0.900 6 C -0.126 4.126 7 N -0.528 5.528 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.326 5.326 13 C 0.371 3.629 14 O -0.430 6.430 15 C -0.213 4.213 16 C -0.066 4.066 17 N -0.100 5.100 18 C 0.056 3.944 19 C -0.136 4.136 20 C -0.104 4.104 21 C -0.065 4.065 22 Cl -0.031 7.031 23 C -0.106 4.106 24 C -0.114 4.114 25 N -0.038 5.038 26 N -0.062 5.062 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.239 0.761 32 H 0.225 0.775 33 H 0.164 0.836 34 H 0.166 0.834 35 H 0.165 0.835 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.821 -0.057 -28.968 29.219 hybrid contribution -0.683 1.296 0.031 1.465 sum 3.138 1.239 -28.937 29.133 Atomic orbital electron populations 1.22462 0.99033 1.01105 0.99414 1.19203 0.90327 0.94718 0.82454 0.93051 1.21035 1.33333 1.14537 0.88382 0.89972 1.24832 0.95519 0.96731 0.95491 1.69869 1.44848 1.40043 0.98025 0.86877 0.80552 0.83601 0.77459 1.20276 1.22156 1.18608 1.46075 1.63135 1.14412 1.08970 1.16763 0.78569 0.85823 0.81756 1.90769 1.52688 1.14846 1.84707 1.21898 1.11923 0.91054 0.96457 1.23381 0.96689 0.96629 0.89910 1.47617 1.44489 1.09732 1.08204 1.17669 1.01307 0.95805 0.79593 1.20945 1.01695 0.96088 0.94848 1.20917 0.97855 0.98646 0.92961 1.21065 1.03204 0.95597 0.86621 1.98400 1.92252 1.98058 1.14350 1.21005 0.99119 0.96772 0.93732 1.20948 0.98326 0.98649 0.93520 1.82070 1.22153 1.03501 0.96040 1.74713 1.07267 1.13362 1.10830 0.94430 0.92617 0.93287 0.92278 0.76074 0.77525 0.83581 0.83436 0.83496 0.82984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 8.96 37.15 0.33 -3.28 16 2 C 0.24 5.67 2.15 -69.09 -0.15 5.52 16 3 H 0.05 1.33 6.63 -51.93 -0.34 0.98 16 4 C -0.53 -14.61 9.31 -34.44 -0.32 -14.93 16 5 H 0.08 2.38 7.98 -52.48 -0.42 1.96 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 7 N -0.89 -26.50 13.96 55.43 0.77 -25.73 16 8 Si 0.89 21.62 24.37 -169.99 -4.14 17.48 16 9 H -0.28 -6.52 6.87 56.52 0.39 -6.13 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 11 H -0.26 -6.27 6.53 56.52 0.37 -5.91 16 12 N -0.68 -14.18 5.07 -55.99 -0.28 -14.46 16 13 C 0.59 11.42 7.78 -12.48 -0.10 11.33 16 14 O -0.55 -11.83 16.53 5.28 0.09 -11.74 16 15 C -0.08 -1.21 6.99 -83.54 -0.58 -1.79 16 16 C 0.09 1.05 10.60 -16.71 -0.18 0.88 16 17 N -0.32 -3.74 3.82 -10.42 -0.04 -3.78 16 18 C 0.15 1.31 6.70 -83.57 -0.56 0.75 16 19 C -0.11 -0.75 9.47 -39.41 -0.37 -1.12 16 20 C -0.08 -0.47 9.82 -39.58 -0.39 -0.86 16 21 C -0.04 -0.23 6.32 -39.47 -0.25 -0.48 16 22 Cl -0.06 -0.36 28.95 -51.86 -1.50 -1.86 16 23 C -0.09 -0.53 9.82 -39.57 -0.39 -0.91 16 24 C -0.09 -0.72 9.67 -39.41 -0.38 -1.10 16 25 N -0.06 -0.84 13.12 60.35 0.79 -0.05 16 26 N -0.19 -3.04 12.03 32.85 0.40 -2.64 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 30 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.40 7.98 8.23 -40.82 -0.34 7.64 16 32 H 0.21 1.82 7.13 -52.48 -0.37 1.44 16 33 H 0.15 0.68 6.81 -52.49 -0.36 0.32 16 34 H 0.15 0.53 8.06 -52.49 -0.42 0.10 16 35 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 36 H 0.15 1.13 7.73 -52.48 -0.41 0.73 16 LS Contribution 329.89 15.07 4.97 4.97 Total: -1.00 -32.31 329.89 -5.66 -37.97 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -3.28 Total: 3.75 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -3.43 Total: -3.91 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 1.64 Total: -46.66 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.14 Total: 17.48 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.50 Total: -1.86 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.31 -5.66 -37.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604573956.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.156 kcal (2) G-P(sol) polarization free energy of solvation -32.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds