Wall clock time and date at job start Tue Mar 31 2020 12:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47544 * 2 1 4 4 C 1.50700 * 109.47096 * 120.00086 * 2 1 3 5 5 H 1.08003 * 120.00276 * 119.99373 * 4 2 1 6 6 C 1.37882 * 120.00054 * 300.00105 * 4 2 1 7 7 N 1.31512 * 119.99842 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 119.99712 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.47135 * 90.00428 * 8 6 4 10 10 H 1.48504 * 109.47203 * 210.00188 * 8 6 4 11 11 H 1.48496 * 109.47403 * 330.00435 * 8 6 4 12 12 N 1.46499 * 109.47258 * 239.99749 * 2 1 3 13 13 C 1.34784 * 119.99893 * 85.00288 * 12 2 1 14 14 O 1.21597 * 119.99617 * 359.97438 * 13 12 2 15 15 C 1.47505 * 120.00128 * 179.72594 * 13 12 2 16 16 C 1.36624 * 125.77144 * 179.97438 * 15 13 12 17 17 N 1.35067 * 106.79788 * 180.02562 * 16 15 13 18 18 C 1.40246 * 126.60982 * 180.02562 * 17 16 15 19 19 C 1.38825 * 120.05733 * 359.73171 * 18 17 16 20 20 C 1.38109 * 119.94624 * 179.70109 * 19 18 17 21 21 C 1.38383 * 120.05455 * 0.59123 * 20 19 18 22 22 Cl 1.73600 * 119.94934 * 179.70130 * 21 20 19 23 23 C 1.38390 * 120.10273 * 359.67882 * 21 20 19 24 24 C 1.38105 * 120.05333 * 0.02562 * 23 21 20 25 25 N 1.40211 * 106.77602 * 0.02562 * 17 16 15 26 26 N 1.28762 * 108.38402 * 359.72709 * 25 17 16 27 27 H 1.09003 * 109.47025 * 59.99700 * 1 2 3 28 28 H 1.09002 * 109.47544 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47281 * 300.00191 * 1 2 3 30 30 H 0.96997 * 119.99740 * 179.97438 * 7 6 4 31 31 H 0.97005 * 120.00261 * 265.00500 * 12 2 1 32 32 H 1.08003 * 126.59764 * 0.03099 * 16 15 13 33 33 H 1.07999 * 120.02057 * 359.97438 * 19 18 17 34 34 H 1.08001 * 119.97207 * 180.27294 * 20 19 18 35 35 H 1.07999 * 119.97022 * 179.97438 * 23 21 20 36 36 H 1.08006 * 120.02612 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 2.1371 -0.8597 3.5565 8 14 0.6258 1.2797 2.6541 9 1 -0.8021 0.8744 2.6993 10 1 0.9771 1.9953 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3572 14 8 1.8575 1.1614 -2.4118 15 6 2.6445 -0.7121 -3.5600 16 6 2.8199 -0.1483 -4.7921 17 7 3.2873 -1.1215 -5.6037 18 6 3.6105 -0.9938 -6.9625 19 6 3.4532 0.2278 -7.6028 20 6 3.7781 0.3525 -8.9394 21 6 4.2485 -0.7421 -9.6433 22 17 4.6486 -0.5842 -11.3252 23 6 4.4009 -1.9623 -9.0085 24 6 4.0831 -2.0904 -7.6706 25 7 3.3871 -2.2839 -4.8260 26 7 3.0060 -2.0050 -3.6281 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.9031 -0.5281 4.4375 31 1 2.2490 -1.6319 -1.1526 32 1 2.6227 0.8780 -5.0645 33 1 3.0813 1.0811 -7.0551 34 1 3.6600 1.3038 -9.4368 35 1 4.7678 -2.8153 -9.5601 36 1 4.2026 -3.0429 -7.1756 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604573956.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:07 Heat of formation + Delta-G solvation = 68.828109 kcal Electronic energy + Delta-G solvation = -22781.080330 eV Core-core repulsion = 19099.910464 eV Total energy + Delta-G solvation = -3681.169867 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.078 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.61612 -40.70007 -40.24894 -37.66108 -36.88349 -35.66835 -34.38497 -32.80586 -32.22875 -31.54020 -30.48752 -27.22473 -25.76055 -25.34606 -23.95078 -22.70794 -22.38314 -21.27686 -20.17471 -18.87678 -18.03633 -17.61436 -17.38355 -17.17351 -16.55115 -16.48279 -16.02098 -15.76998 -15.31084 -14.97315 -14.86699 -14.72103 -14.65089 -14.10498 -13.71272 -13.66424 -13.45266 -13.31886 -13.15357 -12.75888 -12.74128 -12.45973 -12.11896 -11.92413 -11.90655 -11.61908 -11.28030 -11.12177 -10.85367 -10.69118 -10.31600 -9.94581 -9.55450 -8.35555 -6.42805 -0.81875 0.04784 0.44991 0.54404 0.73973 1.04638 1.31605 1.38922 1.49110 2.19470 2.24487 2.29301 2.39292 2.99999 3.02317 3.15749 3.56025 3.68042 3.76323 3.82770 3.95095 4.22689 4.31923 4.42664 4.49726 4.60224 4.70082 4.72044 4.78137 4.98052 4.99314 5.11913 5.23280 5.31746 5.42201 5.57447 5.59939 6.11025 6.55522 6.61036 6.83256 7.13795 7.29365 8.79969 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.042922 B = 0.002173 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.196106 B =12880.880617 C =13328.585350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.242 3.758 3 H 0.035 0.965 4 C -0.537 4.537 5 H 0.050 0.950 6 C 0.025 3.975 7 N -0.935 5.935 8 Si 0.944 3.056 9 H -0.259 1.259 10 H -0.292 1.292 11 H -0.254 1.254 12 N -0.687 5.687 13 C 0.595 3.405 14 O -0.573 6.573 15 C -0.105 4.105 16 C 0.112 3.888 17 N -0.306 5.306 18 C 0.114 3.886 19 C -0.105 4.105 20 C -0.082 4.082 21 C -0.036 4.036 22 Cl -0.056 7.056 23 C -0.087 4.087 24 C -0.098 4.098 25 N -0.073 5.073 26 N -0.213 5.213 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.271 0.729 31 H 0.407 0.593 32 H 0.245 0.755 33 H 0.169 0.831 34 H 0.172 0.828 35 H 0.165 0.835 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.995 2.251 -32.061 32.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.138 3.862 3 H 0.053 0.947 4 C -0.575 4.575 5 H 0.069 0.931 6 C -0.174 4.174 7 N -0.574 5.574 8 Si 0.770 3.230 9 H -0.184 1.184 10 H -0.220 1.220 11 H -0.178 1.178 12 N -0.334 5.334 13 C 0.379 3.621 14 O -0.453 6.453 15 C -0.244 4.244 16 C -0.042 4.042 17 N -0.084 5.084 18 C 0.023 3.977 19 C -0.125 4.125 20 C -0.101 4.101 21 C -0.064 4.064 22 Cl -0.026 7.026 23 C -0.106 4.106 24 C -0.118 4.118 25 N -0.051 5.051 26 N -0.087 5.087 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.243 0.757 32 H 0.261 0.739 33 H 0.186 0.814 34 H 0.190 0.810 35 H 0.182 0.818 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.203 1.578 -31.955 32.153 hybrid contribution -0.350 0.729 0.675 1.053 sum 2.853 2.307 -31.280 31.494 Atomic orbital electron populations 1.22356 0.97327 1.01757 0.99969 1.18898 0.91560 0.93434 0.82354 0.94723 1.21237 1.32567 1.13613 0.90107 0.93142 1.25643 0.96918 0.99737 0.95115 1.69993 1.46658 1.42019 0.98694 0.85925 0.79558 0.79951 0.77517 1.18420 1.21969 1.17848 1.45941 1.64025 1.14553 1.08923 1.17010 0.77508 0.85521 0.82015 1.90738 1.53599 1.15710 1.85238 1.21456 1.14890 0.91564 0.96468 1.23816 0.94261 0.97721 0.88430 1.47720 1.42853 1.08731 1.09078 1.18035 1.03901 0.97415 0.78339 1.21214 1.00477 0.95686 0.95146 1.21212 0.96843 0.99461 0.92559 1.21260 1.02422 0.95841 0.86842 1.98411 1.92149 1.98033 1.14057 1.21170 0.98690 0.97567 0.93127 1.21012 0.98306 0.98367 0.94130 1.81991 1.22676 1.04737 0.95744 1.74680 1.08251 1.13823 1.11943 0.92826 0.91992 0.93609 0.92017 0.75739 0.73904 0.81370 0.81011 0.81778 0.83460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.77 8.96 71.98 0.65 -6.12 16 2 C 0.24 11.64 2.15 44.24 0.10 11.74 16 3 H 0.03 1.80 6.63 -2.39 -0.02 1.78 16 4 C -0.54 -30.08 9.31 25.60 0.24 -29.85 16 5 H 0.05 3.07 7.98 -2.91 -0.02 3.05 16 6 C 0.03 1.45 5.45 84.66 0.46 1.91 16 7 N -0.93 -56.88 13.96 21.45 0.30 -56.58 16 8 Si 0.94 44.34 24.37 68.60 1.67 46.01 16 9 H -0.26 -11.37 6.87 99.48 0.68 -10.69 16 10 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 11 H -0.25 -11.58 6.53 99.48 0.65 -10.93 16 12 N -0.69 -29.08 5.07 -449.29 -2.28 -31.35 16 13 C 0.60 22.91 7.78 86.69 0.67 23.59 16 14 O -0.57 -24.00 16.53 -4.02 -0.07 -24.06 16 15 C -0.11 -3.31 6.99 40.82 0.29 -3.02 16 16 C 0.11 2.50 10.60 83.82 0.89 3.39 16 17 N -0.31 -6.63 3.82 -186.88 -0.71 -7.34 16 18 C 0.11 1.76 6.70 38.08 0.25 2.02 16 19 C -0.10 -1.01 9.47 22.38 0.21 -0.80 16 20 C -0.08 -0.62 9.82 22.27 0.22 -0.41 16 21 C -0.04 -0.34 6.32 22.34 0.14 -0.20 16 22 Cl -0.06 -0.52 28.95 -2.72 -0.08 -0.60 16 23 C -0.09 -0.85 9.82 22.27 0.22 -0.64 16 24 C -0.10 -1.34 9.67 22.38 0.22 -1.12 16 25 N -0.07 -2.05 13.12 37.02 0.49 -1.56 16 26 N -0.21 -6.96 12.03 -49.98 -0.60 -7.56 16 27 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.05 2.00 3.27 -2.38 -0.01 1.99 16 30 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 31 H 0.41 16.65 8.23 -92.70 -0.76 15.89 16 32 H 0.24 3.37 7.13 -2.91 -0.02 3.35 16 33 H 0.17 0.82 6.81 -2.91 -0.02 0.80 16 34 H 0.17 0.49 8.06 -2.91 -0.02 0.47 16 35 H 0.16 0.98 8.06 -2.91 -0.02 0.95 16 36 H 0.15 2.11 7.73 -2.91 -0.02 2.09 16 Total: -1.00 -70.98 329.89 3.58 -67.39 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.31 Total: 15.16 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 4.55 Total: 0.50 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -2.81 Total: -104.40 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.07 Total: -24.06 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.67 Total: 46.01 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -0.08 Total: -0.60 kcal Total: -70.98 3.58 -67.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604573956.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.223 kcal (2) G-P(sol) polarization free energy of solvation -70.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds