Wall clock time and date at job start Tue Mar 31 2020 12:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47025 * 12.49123 * 3 2 1 5 5 C 1.36885 * 119.99914 * 79.01675 * 4 3 2 6 6 H 1.08005 * 120.00259 * 225.74021 * 5 4 3 7 7 C 1.39041 * 120.00105 * 45.74133 * 5 4 3 8 8 N 1.31373 * 119.99800 * 52.15635 * 7 5 4 9 9 Si 1.86792 * 119.99808 * 232.15870 * 7 5 4 10 10 H 1.48499 * 109.47351 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47155 * 119.99784 * 9 7 5 12 12 H 1.48504 * 109.46766 * 239.99823 * 9 7 5 13 13 C 1.34777 * 120.00073 * 259.01547 * 4 3 2 14 14 O 1.21632 * 119.99807 * 172.61166 * 13 4 3 15 15 C 1.47481 * 119.99843 * 352.33438 * 13 4 3 16 16 C 1.40234 * 119.94630 * 34.38943 * 15 13 4 17 17 C 1.36160 * 120.51644 * 179.97438 * 16 15 13 18 18 C 1.40040 * 120.08733 * 0.02562 * 17 16 15 19 19 N 1.35540 * 133.39130 * 179.97438 * 18 17 16 20 20 C 1.30236 * 109.70992 * 179.97438 * 19 18 17 21 21 C 1.50700 * 124.92358 * 180.02562 * 20 19 18 22 22 F 1.39898 * 109.46613 * 119.97926 * 21 20 19 23 23 F 1.39899 * 109.47223 * 239.97754 * 21 20 19 24 24 N 1.35857 * 110.14660 * 0.02562 * 20 19 18 25 25 H 0.96999 * 126.36816 * 179.97438 * 24 20 19 26 26 C 1.38190 * 107.26762 * 0.02562 * 24 20 19 27 27 C 1.38405 * 134.01520 * 180.33582 * 26 24 20 28 28 H 1.09001 * 109.47170 * 252.49346 * 3 2 1 29 29 H 1.08999 * 109.46846 * 132.49259 * 3 2 1 30 30 H 0.97003 * 119.99743 * 180.02562 * 8 7 5 31 31 H 1.07998 * 119.73795 * 0.02562 * 16 15 13 32 32 H 1.08000 * 119.95774 * 179.97438 * 17 16 15 33 33 H 1.08995 * 109.47521 * 359.97438 * 21 20 19 34 34 H 1.07993 * 120.22022 * 359.89966 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.3476 -0.2987 5 6 3.1123 -1.7994 -1.5908 6 1 2.7458 -2.7889 -1.8213 7 6 3.5997 -0.9845 -2.6065 8 7 4.7863 -0.4322 -2.4930 9 14 2.5675 -0.6752 -4.1322 10 1 1.2807 -1.4072 -4.0161 11 1 2.2998 0.7797 -4.2621 12 1 3.3016 -1.1525 -5.3316 13 6 3.5316 -2.1432 0.6986 14 8 3.8104 -3.3052 0.4719 15 6 3.6749 -1.6031 2.0634 16 6 2.7782 -0.6308 2.5293 17 6 2.8995 -0.1246 3.7875 18 6 3.9254 -0.5729 4.6287 19 7 4.2911 -0.2648 5.8969 20 6 5.3326 -0.9689 6.2371 21 6 6.0223 -0.8981 7.5751 22 9 5.9818 -2.1552 8.1876 23 9 7.3542 -0.5106 7.3932 24 7 5.7069 -1.7765 5.2107 25 1 6.4519 -2.3977 5.2099 26 6 4.8296 -1.5478 4.1678 27 6 4.6992 -2.0636 2.8901 28 1 2.9712 0.3100 0.9801 29 1 2.9710 0.6950 -0.7578 30 1 5.1262 0.1366 -3.2014 31 1 1.9847 -0.2815 1.8853 32 1 2.2041 0.6242 4.1369 33 1 5.5151 -0.1693 8.2073 34 1 5.3878 -2.8158 2.5347 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609029275.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:14 Heat of formation + Delta-G solvation = -11.811109 kcal Electronic energy + Delta-G solvation = -25602.811456 eV Core-core repulsion = 21366.348130 eV Total energy + Delta-G solvation = -4236.463326 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.083 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.23034 -48.23442 -43.39975 -41.06745 -38.03232 -37.93436 -36.39153 -34.48472 -34.23205 -31.79537 -31.31486 -29.39407 -28.45155 -26.74828 -24.06719 -23.76094 -22.45806 -21.36061 -20.04148 -19.59565 -19.22592 -18.52263 -18.28174 -17.97331 -17.70022 -17.06430 -16.76340 -16.47518 -16.36565 -15.81185 -15.38812 -15.23100 -15.09009 -15.00419 -14.78143 -14.57781 -14.10111 -14.07075 -13.84039 -13.73932 -13.31189 -13.24021 -13.00143 -12.81965 -12.66691 -12.51119 -12.19410 -12.05608 -11.98425 -11.39995 -10.92912 -10.52634 -9.78313 -9.67350 -9.36486 -8.66237 -6.05171 -0.54899 0.19754 1.16542 1.25993 1.40597 1.45336 1.55034 1.59223 1.68774 1.96124 2.07939 2.30302 2.52677 2.70793 2.94497 3.00723 3.21126 3.27531 3.68677 3.72344 3.78021 3.82410 4.02818 4.15229 4.16815 4.23666 4.43963 4.60233 4.88366 5.04807 5.16999 5.26979 5.44852 5.51936 6.04228 6.20545 6.35707 6.41453 6.49870 7.06582 7.20213 7.90045 8.34534 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.024585 B = 0.003142 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.651245 B = 8908.606689 C = 9380.013044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.222 3.778 3 C 0.172 3.828 4 N -0.431 5.431 5 C -0.416 4.416 6 H 0.060 0.940 7 C 0.072 3.928 8 N -0.804 5.804 9 Si 0.922 3.078 10 H -0.278 1.278 11 H -0.254 1.254 12 H -0.273 1.273 13 C 0.499 3.501 14 O -0.603 6.603 15 C -0.094 4.094 16 C -0.125 4.125 17 C -0.045 4.045 18 C 0.041 3.959 19 N -0.465 5.465 20 C 0.209 3.791 21 C 0.367 3.633 22 F -0.192 7.192 23 F -0.191 7.191 24 N -0.569 5.569 25 H 0.441 0.559 26 C 0.054 3.946 27 C -0.064 4.064 28 H 0.163 0.837 29 H 0.117 0.883 30 H 0.286 0.714 31 H 0.149 0.851 32 H 0.168 0.832 33 H 0.193 0.807 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.631 6.357 18.242 19.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C -0.097 4.097 3 C 0.046 3.954 4 N -0.150 5.150 5 C -0.540 4.540 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.432 5.432 9 Si 0.744 3.256 10 H -0.202 1.202 11 H -0.178 1.178 12 H -0.198 1.198 13 C 0.290 3.710 14 O -0.488 6.488 15 C -0.099 4.099 16 C -0.146 4.146 17 C -0.064 4.064 18 C -0.078 4.078 19 N -0.186 5.186 20 C -0.059 4.059 21 C 0.312 3.688 22 F -0.173 7.173 23 F -0.172 7.172 24 N -0.181 5.181 25 H 0.283 0.717 26 C -0.057 4.057 27 C -0.086 4.086 28 H 0.179 0.821 29 H 0.135 0.865 30 H 0.096 0.904 31 H 0.166 0.834 32 H 0.185 0.815 33 H 0.210 0.790 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.872 6.502 18.529 19.846 hybrid contribution 1.070 -1.357 -1.866 2.543 sum 3.942 5.144 16.663 17.880 Atomic orbital electron populations 1.81074 1.13738 1.08911 1.10228 1.30004 0.95767 0.92171 0.91730 1.20116 0.79779 0.88088 1.07420 1.43157 1.53371 1.12600 1.05843 1.18645 1.49191 1.04495 0.81701 0.92270 1.25746 0.92903 0.95418 1.00409 1.70516 1.11622 1.25023 1.36026 0.86097 0.80537 0.79491 0.79519 1.20242 1.17781 1.19817 1.18921 0.79497 0.86942 0.85592 1.90610 1.54751 1.18865 1.84562 1.19843 0.97694 0.98761 0.93649 1.21300 0.99817 0.96793 0.96666 1.20161 0.95840 0.99796 0.90631 1.19326 0.98391 0.98273 0.91850 1.70164 1.11724 1.24375 1.12375 1.24390 0.95790 0.92701 0.93056 1.20046 0.78746 0.83963 0.86090 1.93074 1.96334 1.44631 1.83243 1.93077 1.37254 1.90881 1.95995 1.42795 1.27957 1.36523 1.10807 0.71733 1.18669 0.94728 1.01272 0.90996 1.19837 0.98960 0.99928 0.89835 0.82055 0.86536 0.90375 0.83374 0.81465 0.79024 0.85242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -17.90 18.54 20.01 0.37 -17.53 16 2 C 0.22 8.07 13.78 89.44 1.23 9.31 16 3 C 0.17 6.13 5.27 84.58 0.45 6.58 16 4 N -0.43 -20.05 2.58 -649.07 -1.68 -21.72 16 5 C -0.42 -22.05 8.41 84.10 0.71 -21.35 16 6 H 0.06 3.53 8.00 -2.91 -0.02 3.51 16 7 C 0.07 3.47 4.25 84.95 0.36 3.84 16 8 N -0.80 -39.03 13.95 21.68 0.30 -38.73 16 9 Si 0.92 37.86 29.69 68.60 2.04 39.89 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 12 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 13 C 0.50 23.57 7.34 86.68 0.64 24.20 16 14 O -0.60 -33.79 16.73 -4.13 -0.07 -33.86 16 15 C -0.09 -3.43 5.51 -20.06 -0.11 -3.54 16 16 C -0.13 -3.66 7.32 22.27 0.16 -3.49 16 17 C -0.05 -1.12 10.03 22.22 0.22 -0.90 16 18 C 0.04 1.11 7.23 39.62 0.29 1.40 16 19 N -0.47 -11.04 11.26 -179.78 -2.03 -13.07 16 20 C 0.21 4.08 7.51 137.94 1.04 5.11 16 21 C 0.37 4.36 5.86 71.24 0.42 4.78 16 22 F -0.19 -2.71 17.32 44.97 0.78 -1.93 16 23 F -0.19 -2.68 17.32 44.97 0.78 -1.90 16 24 N -0.57 -11.93 6.23 -179.32 -1.12 -13.05 16 25 H 0.44 6.84 8.96 -92.71 -0.83 6.01 16 26 C 0.05 1.49 7.29 38.79 0.28 1.78 16 27 C -0.06 -2.08 9.62 22.60 0.22 -1.87 16 28 H 0.16 4.67 3.98 -2.39 -0.01 4.66 16 29 H 0.12 4.08 7.32 -2.39 -0.02 4.06 16 30 H 0.29 12.45 8.31 -92.71 -0.77 11.68 16 31 H 0.15 4.20 3.66 -2.91 -0.01 4.19 16 32 H 0.17 3.11 8.06 -2.91 -0.02 3.08 16 33 H 0.19 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.13 4.34 7.97 -2.91 -0.02 4.31 16 Total: -1.00 -69.94 318.78 5.67 -64.27 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.39 Total: 11.78 kcal Atomic # 6 Polarization: 19.95 SS G_CDS: 5.90 Total: 25.85 kcal Atomic # 7 Polarization: -99.96 SS G_CDS: -4.15 Total: -104.10 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -0.07 Total: -33.86 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 1.56 Total: -3.84 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.04 Total: 39.89 kcal Total: -69.94 5.67 -64.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609029275.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.461 kcal (2) G-P(sol) polarization free energy of solvation -69.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds