Wall clock time and date at job start Tue Mar 31 2020 12:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99755 * 2 1 4 4 H 1.48508 * 109.47245 * 240.00243 * 3 2 1 5 5 H 1.48493 * 109.47339 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47329 * 120.00833 * 3 2 1 7 7 C 1.37876 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00022 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99888 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.47089 * 180.02562 * 9 7 2 11 11 C 1.34963 * 125.97042 * 125.00168 * 10 9 7 12 12 C 1.35240 * 107.86025 * 179.74526 * 11 10 9 13 13 C 1.40421 * 107.86353 * 0.37102 * 12 11 10 14 14 N 1.40130 * 125.96882 * 179.88517 * 13 12 11 15 15 C 1.34777 * 119.99674 * 174.84279 * 14 13 12 16 16 S 1.71208 * 120.00006 * 5.04405 * 15 14 13 17 17 N 1.34783 * 120.00260 * 185.04094 * 15 14 13 18 18 C 1.40008 * 120.00012 * 182.92873 * 17 15 14 19 19 C 1.38824 * 120.07978 * 38.84084 * 18 17 15 20 20 C 1.38141 * 119.95081 * 179.97438 * 19 18 17 21 21 C 1.38279 * 120.11568 * 0.02562 * 20 19 18 22 22 C 1.38272 * 120.15507 * 359.97438 * 21 20 19 23 23 C 1.38291 * 120.05107 * 359.97438 * 22 21 20 24 24 F 1.35096 * 120.05997 * 180.02562 * 23 22 21 25 25 N 1.31215 * 108.05358 * 359.62462 * 13 12 11 26 26 H 0.97001 * 120.00180 * 359.97438 * 1 2 3 27 27 H 1.09009 * 109.46943 * 60.00733 * 9 7 2 28 28 H 1.08994 * 109.47309 * 300.00527 * 9 7 2 29 29 H 1.08002 * 126.07146 * 359.97438 * 11 10 9 30 30 H 1.08000 * 126.07277 * 180.22466 * 12 11 10 31 31 H 0.96998 * 120.00523 * 354.84971 * 14 13 12 32 32 H 0.96993 * 119.99493 * 2.93657 * 17 15 14 33 33 H 1.08003 * 120.01889 * 359.97438 * 19 18 17 34 34 H 1.08003 * 119.93898 * 180.29797 * 20 19 18 35 35 H 1.07998 * 119.91995 * 179.97438 * 21 20 19 36 36 H 1.08005 * 119.97303 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2123 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.2420 -4.6224 0.8942 12 6 3.2570 -5.4457 0.5466 13 6 3.8685 -4.9151 -0.6008 14 7 4.9634 -5.4664 -1.2796 15 6 5.3907 -4.9122 -2.4314 16 16 4.6805 -3.4612 -2.9985 17 7 6.3772 -5.5002 -3.1370 18 6 6.8632 -4.8927 -4.3010 19 6 7.0146 -3.5138 -4.3551 20 6 7.4948 -2.9172 -5.5048 21 6 7.8246 -3.6912 -6.6022 22 6 7.6756 -5.0650 -6.5534 23 6 7.1964 -5.6692 -5.4055 24 9 7.0513 -7.0115 -5.3574 25 7 3.2317 -3.8158 -0.9294 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8904 28 1 0.6247 -2.5571 0.8896 29 1 1.5780 -4.7520 1.7360 30 1 3.5475 -6.3495 1.0614 31 1 5.4137 -6.2469 -0.9206 32 1 6.7503 -6.3442 -2.8383 33 1 6.7570 -2.9079 -3.4989 34 1 7.6171 -1.8449 -5.5450 35 1 8.1994 -3.2214 -7.4996 36 1 7.9337 -5.6666 -7.4124 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735422574.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:31 Heat of formation + Delta-G solvation = 106.354357 kcal Electronic energy + Delta-G solvation = -23209.434804 eV Core-core repulsion = 19544.308694 eV Total energy + Delta-G solvation = -3665.126111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.080 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.13607 -40.65746 -39.90561 -38.03049 -35.35693 -33.32571 -31.12835 -30.74547 -29.63568 -29.31267 -26.79654 -24.99832 -23.21230 -22.63065 -22.52400 -20.79113 -20.25264 -18.50567 -18.17836 -17.39387 -16.52967 -16.46831 -16.39191 -15.88642 -15.52117 -15.15265 -14.83735 -14.74590 -14.18759 -14.00186 -13.82639 -13.25686 -12.96729 -12.66994 -12.49247 -12.14700 -12.05094 -11.69981 -11.49219 -11.02986 -10.83817 -10.77134 -10.64251 -10.16448 -10.01841 -9.52441 -9.07042 -8.82994 -8.51764 -8.19860 -7.81811 -7.36882 -6.35543 -6.13716 -4.16712 0.69694 1.10486 1.45175 1.95549 2.44480 2.82970 3.20736 3.34622 3.37378 3.44134 3.45198 3.51047 3.85232 3.99140 4.42760 4.57197 4.81359 5.06768 5.14077 5.20522 5.29657 5.31359 5.52499 5.78362 5.94357 5.98204 6.02388 6.09685 6.29475 6.33721 6.42523 6.58107 6.78248 6.91124 7.13282 7.23116 7.41131 7.81046 7.97267 8.07051 8.63148 8.91803 9.48159 10.95627 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.014731 B = 0.003720 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.290639 B = 7524.600336 C = 9081.346905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.062 3.938 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.070 0.930 9 C 0.258 3.742 10 N -0.329 5.329 11 C 0.060 3.940 12 C -0.305 4.305 13 C 0.225 3.775 14 N -0.578 5.578 15 C 0.513 3.487 16 S -0.482 6.482 17 N -0.637 5.637 18 C 0.105 3.895 19 C -0.052 4.052 20 C -0.120 4.120 21 C -0.091 4.091 22 C -0.153 4.153 23 C 0.085 3.915 24 F -0.141 7.141 25 N -0.185 5.185 26 H 0.266 0.734 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.166 0.834 30 H 0.136 0.864 31 H 0.407 0.593 32 H 0.405 0.595 33 H 0.162 0.838 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.697 -13.594 -6.828 21.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.088 0.912 9 C 0.140 3.860 10 N -0.110 5.110 11 C -0.091 4.091 12 C -0.338 4.338 13 C -0.029 4.029 14 N -0.203 5.203 15 C 0.160 3.840 16 S -0.347 6.347 17 N -0.264 5.264 18 C 0.009 3.991 19 C -0.076 4.076 20 C -0.141 4.141 21 C -0.110 4.110 22 C -0.174 4.174 23 C 0.062 3.938 24 F -0.120 7.120 25 N -0.015 5.015 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.184 0.816 30 H 0.154 0.846 31 H 0.244 0.756 32 H 0.242 0.758 33 H 0.179 0.821 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 14.699 -11.381 -7.937 20.213 hybrid contribution 1.056 -1.793 1.269 2.437 sum 15.755 -13.173 -6.668 21.592 Atomic orbital electron populations 1.69909 1.06028 1.27557 1.50261 1.24903 0.94924 0.99442 0.94729 0.86414 0.79407 0.81902 0.78978 1.19763 1.21195 1.20176 1.21197 0.94050 0.89187 1.51398 0.91176 1.19737 0.85723 0.81493 0.99094 1.50281 1.23824 1.18898 1.17984 1.22418 0.99506 0.90296 0.96863 1.20653 1.04398 1.06372 1.02396 1.19132 0.91851 0.96724 0.95228 1.41541 1.29358 1.30182 1.19173 1.22754 0.83931 0.93593 0.83683 1.93732 1.60953 1.08069 1.71919 1.41876 1.35499 1.24790 1.24283 1.17358 1.03589 0.92995 0.85114 1.21642 0.92377 0.92276 1.01287 1.21099 0.99466 1.00735 0.92761 1.21063 0.98461 0.92537 0.98927 1.20867 1.03922 0.95929 0.96633 1.17478 1.05472 0.76809 0.94024 1.91467 1.93948 1.29775 1.96820 1.79944 0.99607 1.12276 1.09665 0.92435 0.93564 0.92925 0.81642 0.84610 0.75555 0.75771 0.82103 0.84720 0.84973 0.84575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.02 13.29 55.43 0.74 -25.28 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.91 22.14 29.54 -169.99 -5.02 17.12 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.79 9.24 -34.44 -0.32 -15.10 16 8 H 0.07 2.08 7.81 -52.49 -0.41 1.67 16 9 C 0.26 6.60 6.26 -5.19 -0.03 6.57 16 10 N -0.33 -7.48 3.67 -62.56 -0.23 -7.71 16 11 C 0.06 1.08 11.43 -17.24 -0.20 0.88 16 12 C -0.31 -4.96 10.83 -39.83 -0.43 -5.39 16 13 C 0.23 4.17 7.76 -154.42 -1.20 2.97 16 14 N -0.58 -8.17 5.45 -12.67 -0.07 -8.24 16 15 C 0.51 7.95 7.76 -86.91 -0.67 7.28 16 16 S -0.48 -10.08 22.69 -107.50 -2.44 -12.52 16 17 N -0.64 -7.49 5.20 -11.34 -0.06 -7.55 16 18 C 0.10 1.30 6.04 -83.60 -0.50 0.80 16 19 C -0.05 -0.67 7.85 -39.40 -0.31 -0.98 16 20 C -0.12 -1.26 10.04 -39.60 -0.40 -1.66 16 21 C -0.09 -0.80 10.04 -39.55 -0.40 -1.20 16 22 C -0.15 -1.44 10.02 -39.55 -0.40 -1.84 16 23 C 0.08 0.96 7.31 -39.26 -0.29 0.67 16 24 F -0.14 -1.60 17.02 2.25 0.04 -1.56 16 25 N -0.19 -4.27 9.05 31.43 0.28 -3.99 16 26 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.05 1.28 8.14 -51.92 -0.42 0.85 16 28 H 0.05 1.31 8.07 -51.93 -0.42 0.89 16 29 H 0.17 2.38 8.06 -52.49 -0.42 1.96 16 30 H 0.14 1.68 8.06 -52.49 -0.42 1.25 16 31 H 0.41 3.77 8.85 -40.82 -0.36 3.41 16 32 H 0.40 3.33 8.77 -40.82 -0.36 2.98 16 33 H 0.16 2.43 5.78 -37.53 -0.22 2.22 16 34 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 35 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 36 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 333.28 15.07 5.02 5.02 Total: -1.00 -34.75 333.28 -10.41 -45.16 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -3.44 Total: 4.91 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -5.24 Total: -5.35 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 0.66 Total: -52.78 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: -10.08 SS G_CDS: -2.44 Total: -12.52 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.75 -10.41 -45.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735422574.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.514 kcal (2) G-P(sol) polarization free energy of solvation -34.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds