Wall clock time and date at job start Tue Mar 31 2020 12:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99755 * 2 1 4 4 H 1.48508 * 109.47245 * 240.00243 * 3 2 1 5 5 H 1.48493 * 109.47339 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47329 * 120.00833 * 3 2 1 7 7 C 1.37876 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00022 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99888 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.47089 * 180.02562 * 9 7 2 11 11 C 1.34963 * 125.97042 * 125.00168 * 10 9 7 12 12 C 1.35240 * 107.86025 * 179.74526 * 11 10 9 13 13 C 1.40421 * 107.86353 * 0.37102 * 12 11 10 14 14 N 1.40130 * 125.96882 * 179.88517 * 13 12 11 15 15 C 1.34777 * 119.99674 * 174.84279 * 14 13 12 16 16 S 1.71208 * 120.00006 * 5.04405 * 15 14 13 17 17 N 1.34783 * 120.00260 * 185.04094 * 15 14 13 18 18 C 1.40008 * 120.00012 * 182.92873 * 17 15 14 19 19 C 1.38824 * 120.07978 * 38.84084 * 18 17 15 20 20 C 1.38141 * 119.95081 * 179.97438 * 19 18 17 21 21 C 1.38279 * 120.11568 * 0.02562 * 20 19 18 22 22 C 1.38272 * 120.15507 * 359.97438 * 21 20 19 23 23 C 1.38291 * 120.05107 * 359.97438 * 22 21 20 24 24 F 1.35096 * 120.05997 * 180.02562 * 23 22 21 25 25 N 1.31215 * 108.05358 * 359.62462 * 13 12 11 26 26 H 0.97001 * 120.00180 * 359.97438 * 1 2 3 27 27 H 1.09009 * 109.46943 * 60.00733 * 9 7 2 28 28 H 1.08994 * 109.47309 * 300.00527 * 9 7 2 29 29 H 1.08002 * 126.07146 * 359.97438 * 11 10 9 30 30 H 1.08000 * 126.07277 * 180.22466 * 12 11 10 31 31 H 0.96998 * 120.00523 * 354.84971 * 14 13 12 32 32 H 0.96993 * 119.99493 * 2.93657 * 17 15 14 33 33 H 1.08003 * 120.01889 * 359.97438 * 19 18 17 34 34 H 1.08003 * 119.93898 * 180.29797 * 20 19 18 35 35 H 1.07998 * 119.91995 * 179.97438 * 21 20 19 36 36 H 1.08005 * 119.97303 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2123 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.2420 -4.6224 0.8942 12 6 3.2570 -5.4457 0.5466 13 6 3.8685 -4.9151 -0.6008 14 7 4.9634 -5.4664 -1.2796 15 6 5.3907 -4.9122 -2.4314 16 16 4.6805 -3.4612 -2.9985 17 7 6.3772 -5.5002 -3.1370 18 6 6.8632 -4.8927 -4.3010 19 6 7.0146 -3.5138 -4.3551 20 6 7.4948 -2.9172 -5.5048 21 6 7.8246 -3.6912 -6.6022 22 6 7.6756 -5.0650 -6.5534 23 6 7.1964 -5.6692 -5.4055 24 9 7.0513 -7.0115 -5.3574 25 7 3.2317 -3.8158 -0.9294 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8904 28 1 0.6247 -2.5571 0.8896 29 1 1.5780 -4.7520 1.7360 30 1 3.5475 -6.3495 1.0614 31 1 5.4137 -6.2469 -0.9206 32 1 6.7503 -6.3442 -2.8383 33 1 6.7570 -2.9079 -3.4989 34 1 7.6171 -1.8449 -5.5450 35 1 8.1994 -3.2214 -7.4996 36 1 7.9337 -5.6666 -7.4124 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735422574.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:30 Heat of formation + Delta-G solvation = 85.118278 kcal Electronic energy + Delta-G solvation = -23210.355670 eV Core-core repulsion = 19544.308694 eV Total energy + Delta-G solvation = -3666.046976 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.080 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.02313 -42.09530 -40.98099 -39.13979 -36.57119 -35.32707 -32.84790 -31.60619 -30.91711 -30.58104 -28.59353 -26.33199 -24.83294 -23.71528 -23.63391 -22.11932 -21.70984 -19.64145 -19.39052 -18.61324 -18.37976 -17.78799 -17.37497 -17.02770 -16.81796 -16.52817 -16.31867 -15.85941 -15.65656 -15.27560 -14.90022 -14.49815 -14.34421 -14.11391 -13.89066 -13.68785 -13.31041 -12.89862 -12.83125 -12.70222 -12.40976 -12.25933 -12.22693 -12.01929 -11.61164 -11.35130 -10.69435 -10.14486 -9.84252 -9.62116 -9.14275 -8.89486 -8.28966 -7.85227 -6.40064 -0.40026 0.22593 0.37271 0.72976 1.07572 1.33569 1.37390 1.40791 1.49461 1.98939 2.09349 2.35322 2.47086 2.64504 3.03204 3.11274 3.76235 3.88209 4.02398 4.11375 4.27384 4.35897 4.46360 4.72890 4.78461 4.91219 4.98433 5.04196 5.07599 5.10966 5.22726 5.27773 5.52952 5.61220 5.67318 5.85531 5.94523 6.02486 6.13531 6.37723 6.72281 7.15716 7.28653 8.78970 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.014731 B = 0.003720 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.290639 B = 7524.600336 C = 9081.346905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.018 3.982 3 Si 0.964 3.036 4 H -0.282 1.282 5 H -0.271 1.271 6 H -0.266 1.266 7 C -0.535 4.535 8 H 0.048 0.952 9 C 0.276 3.724 10 N -0.362 5.362 11 C 0.053 3.947 12 C -0.282 4.282 13 C 0.224 3.776 14 N -0.558 5.558 15 C 0.548 3.452 16 S -0.604 6.604 17 N -0.607 5.607 18 C 0.079 3.921 19 C -0.070 4.070 20 C -0.127 4.127 21 C -0.076 4.076 22 C -0.148 4.148 23 C 0.082 3.918 24 F -0.141 7.141 25 N -0.243 5.243 26 H 0.271 0.729 27 H 0.011 0.989 28 H 0.058 0.942 29 H 0.200 0.800 30 H 0.187 0.813 31 H 0.435 0.565 32 H 0.426 0.574 33 H 0.133 0.867 34 H 0.146 0.854 35 H 0.169 0.831 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.862 -15.699 -7.035 24.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.181 4.181 3 Si 0.789 3.211 4 H -0.208 1.208 5 H -0.195 1.195 6 H -0.191 1.191 7 C -0.574 4.574 8 H 0.066 0.934 9 C 0.156 3.844 10 N -0.144 5.144 11 C -0.095 4.095 12 C -0.314 4.314 13 C -0.032 4.032 14 N -0.185 5.185 15 C 0.189 3.811 16 S -0.471 6.471 17 N -0.235 5.235 18 C -0.016 4.016 19 C -0.093 4.093 20 C -0.147 4.147 21 C -0.095 4.095 22 C -0.168 4.168 23 C 0.059 3.941 24 F -0.120 7.120 25 N -0.071 5.071 26 H 0.080 0.920 27 H 0.029 0.971 28 H 0.076 0.924 29 H 0.217 0.783 30 H 0.204 0.796 31 H 0.279 0.721 32 H 0.268 0.732 33 H 0.150 0.850 34 H 0.164 0.836 35 H 0.187 0.813 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 16.932 -13.569 -8.140 23.175 hybrid contribution 0.571 -1.342 1.250 1.921 sum 17.503 -14.911 -6.890 24.004 Atomic orbital electron populations 1.69983 1.07054 1.28546 1.50649 1.25658 0.95791 1.02478 0.94213 0.85511 0.78410 0.78457 0.78717 1.20826 1.19525 1.19061 1.21332 0.93171 0.91127 1.51743 0.93411 1.19175 0.85833 0.81950 0.97445 1.49935 1.24536 1.19853 1.20082 1.23185 1.00464 0.88978 0.96883 1.21147 1.02450 1.06966 1.00798 1.19524 0.92066 0.95875 0.95761 1.41264 1.28369 1.30544 1.18366 1.22068 0.83491 0.91802 0.83726 1.94019 1.64968 1.13415 1.74678 1.41712 1.33499 1.24832 1.23426 1.17512 1.05148 0.93149 0.85779 1.21499 0.93781 0.92543 1.01493 1.21350 0.99075 1.01712 0.92563 1.21467 0.96491 0.92302 0.99235 1.21291 1.02354 0.96460 0.96663 1.17605 1.05508 0.76762 0.94178 1.91470 1.93976 1.29667 1.96839 1.79934 1.00968 1.15057 1.11175 0.92018 0.97088 0.92443 0.78279 0.79597 0.72140 0.73204 0.84955 0.83600 0.81327 0.81596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.75 13.29 21.45 0.28 -54.47 16 2 C 0.02 1.07 5.46 84.65 0.46 1.53 16 3 Si 0.96 46.56 29.54 68.60 2.03 48.58 16 4 H -0.28 -14.00 7.11 99.48 0.71 -13.30 16 5 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.54 -31.91 9.24 25.60 0.24 -31.67 16 8 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 9 C 0.28 14.87 6.26 85.63 0.54 15.41 16 10 N -0.36 -16.98 3.67 -351.83 -1.29 -18.27 16 11 C 0.05 1.85 11.43 83.52 0.96 2.80 16 12 C -0.28 -8.35 10.83 22.11 0.24 -8.12 16 13 C 0.22 8.12 7.76 133.34 1.04 9.15 16 14 N -0.56 -14.90 5.45 -194.01 -1.06 -15.96 16 15 C 0.55 16.94 7.76 179.05 1.39 18.33 16 16 S -0.60 -26.93 22.69 -56.49 -1.28 -28.21 16 17 N -0.61 -13.63 5.20 -189.79 -0.99 -14.62 16 18 C 0.08 1.92 6.04 38.17 0.23 2.15 16 19 C -0.07 -1.86 7.85 22.39 0.18 -1.68 16 20 C -0.13 -2.59 10.04 22.26 0.22 -2.37 16 21 C -0.08 -1.14 10.04 22.29 0.22 -0.91 16 22 C -0.15 -2.33 10.02 22.29 0.22 -2.11 16 23 C 0.08 1.68 7.31 22.48 0.16 1.84 16 24 F -0.14 -2.83 17.02 44.97 0.77 -2.07 16 25 N -0.24 -11.60 9.05 -54.46 -0.49 -12.09 16 26 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 27 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.06 2.97 8.07 -2.39 -0.02 2.95 16 29 H 0.20 5.27 8.06 -2.91 -0.02 5.25 16 30 H 0.19 3.56 8.06 -2.91 -0.02 3.53 16 31 H 0.44 6.57 8.85 -92.71 -0.82 5.75 16 32 H 0.43 5.95 8.77 -92.71 -0.81 5.14 16 33 H 0.13 4.37 5.78 -12.42 -0.07 4.30 16 34 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 35 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 36 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -82.46 333.28 3.53 -78.93 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -0.53 Total: 13.80 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 6.10 Total: 4.36 kcal Atomic # 7 Polarization: -111.86 SS G_CDS: -3.54 Total: -115.41 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.77 Total: -2.07 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Atomic # 16 Polarization: -26.93 SS G_CDS: -1.28 Total: -28.21 kcal Total: -82.46 3.53 -78.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735422574.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.049 kcal (2) G-P(sol) polarization free energy of solvation -82.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds