Wall clock time and date at job start Tue Mar 31 2020 12:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47351 * 2 1 4 4 C 1.36910 * 119.99562 * 264.80218 * 3 2 1 5 5 H 1.08003 * 119.99345 * 146.34767 * 4 3 2 6 6 C 1.39020 * 120.00374 * 326.35340 * 4 3 2 7 7 N 1.31372 * 120.00092 * 156.43963 * 6 4 3 8 8 Si 1.86804 * 119.99759 * 336.43142 * 6 4 3 9 9 H 1.48504 * 109.46667 * 95.32274 * 8 6 4 10 10 H 1.48503 * 109.47337 * 215.31982 * 8 6 4 11 11 H 1.48495 * 109.47551 * 335.32387 * 8 6 4 12 12 C 1.34775 * 120.00265 * 84.80846 * 3 2 1 13 13 O 1.21592 * 119.99859 * 175.17919 * 12 3 2 14 14 C 1.47652 * 119.99567 * 355.17391 * 12 3 2 15 15 C 1.40660 * 126.05100 * 180.99761 * 14 12 3 16 16 N 1.31242 * 106.62273 * 179.82883 * 15 14 12 17 17 N 1.40114 * 107.19006 * 0.42457 * 16 15 14 18 18 C 1.40132 * 125.55947 * 179.75621 * 17 16 15 19 19 C 1.38869 * 120.05586 * 179.68618 * 18 17 16 20 20 C 1.38095 * 119.93995 * 179.76471 * 19 18 17 21 21 C 1.38395 * 120.06090 * 0.48344 * 20 19 18 22 22 Cl 1.73594 * 119.94624 * 179.74359 * 21 20 19 23 23 C 1.38404 * 120.10883 * 359.76624 * 21 20 19 24 24 C 1.38098 * 120.05483 * 0.02562 * 23 21 20 25 25 N 1.28706 * 108.87834 * 359.71789 * 17 16 15 26 26 H 1.08994 * 109.46854 * 305.88346 * 1 2 3 27 27 H 1.09005 * 109.46863 * 65.87742 * 1 2 3 28 28 H 1.09002 * 109.47131 * 185.87673 * 1 2 3 29 29 H 1.09000 * 109.47153 * 239.99489 * 2 1 3 30 30 H 1.09007 * 109.47101 * 119.99952 * 2 1 3 31 31 H 0.97009 * 120.00026 * 179.97438 * 7 6 4 32 32 H 1.07997 * 126.68661 * 359.97438 * 15 14 12 33 33 H 1.07997 * 120.02496 * 359.97438 * 19 18 17 34 34 H 1.08005 * 119.96524 * 180.21079 * 20 19 18 35 35 H 1.08001 * 119.97196 * 179.97438 * 23 21 20 36 36 H 1.08007 * 120.02221 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3478 1.9907 -1.1809 5 1 2.1826 3.0507 -1.3058 6 6 2.8949 1.2452 -2.2190 7 7 2.7887 1.6682 -3.4582 8 14 3.7810 -0.3577 -1.8517 9 1 2.8381 -1.4932 -2.0152 10 1 4.9195 -0.5205 -2.7913 11 1 4.2899 -0.3338 -0.4569 12 6 2.1435 2.0518 1.1624 13 8 2.6307 3.1658 1.1721 14 6 1.6888 1.4336 2.4238 15 6 1.7399 2.0230 3.7000 16 7 1.2378 1.1470 4.5384 17 7 0.8848 0.0148 3.7924 18 6 0.3163 -1.1571 4.3093 19 6 0.0045 -2.2116 3.4612 20 6 -0.5513 -3.3672 3.9739 21 6 -0.8067 -3.4711 5.3301 22 17 -1.5115 -4.9226 5.9703 23 6 -0.5016 -2.4196 6.1766 24 6 0.0582 -1.2635 5.6696 25 7 1.1672 0.2270 2.5547 26 1 -0.3633 0.6023 0.8326 27 1 -0.3633 0.4200 -0.9380 28 1 -0.3633 -1.0223 0.1052 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 3.1708 1.1482 -4.1826 32 1 2.1164 3.0058 3.9422 33 1 0.1995 -2.1292 2.4022 34 1 -0.7908 -4.1889 3.3151 35 1 -0.7023 -2.5029 7.2346 36 1 0.2957 -0.4430 6.3306 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751700200.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:52 Heat of formation + Delta-G solvation = 127.223312 kcal Electronic energy + Delta-G solvation = -24136.368234 eV Core-core repulsion = 20457.730573 eV Total energy + Delta-G solvation = -3678.637661 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.078 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.49964 -39.62995 -38.59024 -36.85994 -35.36498 -33.69182 -32.72300 -32.01223 -31.36160 -29.81436 -29.40654 -25.83333 -24.23993 -23.68428 -23.00599 -21.91466 -21.44912 -19.48331 -18.36134 -17.03967 -16.98535 -16.34155 -16.12818 -15.76733 -15.68145 -15.02024 -14.32689 -14.19169 -13.97834 -13.82943 -13.74971 -13.35614 -12.83278 -12.72153 -12.51382 -12.23330 -12.04313 -11.91048 -11.72069 -11.53181 -11.25204 -11.11070 -10.86434 -10.69227 -10.55751 -10.08077 -10.02990 -9.66536 -9.53551 -9.27442 -8.82955 -8.33071 -7.92640 -6.56993 -4.04271 0.27895 0.82935 1.70942 1.71046 1.99974 2.14581 2.97581 3.16350 3.21315 3.24688 3.81292 4.00723 4.04472 4.21936 4.41990 4.45574 4.72064 4.86783 4.97625 5.06819 5.13794 5.38523 5.50912 5.53350 5.65757 5.77489 5.80160 5.86658 5.95717 6.04108 6.10899 6.18019 6.34891 6.48108 6.69146 6.91460 7.36982 7.93145 8.11610 8.36763 8.78862 9.14828 9.61239 10.53379 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.018199 B = 0.003653 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.150125 B = 7662.723479 C = 8784.191301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.082 3.918 3 N -0.431 5.431 4 C -0.310 4.310 5 H 0.113 0.887 6 C 0.064 3.936 7 N -0.846 5.846 8 Si 0.877 3.123 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.262 1.262 12 C 0.522 3.478 13 O -0.559 6.559 14 C -0.012 4.012 15 C 0.077 3.923 16 N -0.288 5.288 17 N -0.189 5.189 18 C 0.181 3.819 19 C -0.107 4.107 20 C -0.086 4.086 21 C -0.045 4.045 22 Cl -0.067 7.067 23 C -0.088 4.088 24 C -0.105 4.105 25 N -0.216 5.216 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.278 0.722 32 H 0.216 0.784 33 H 0.152 0.848 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.527 -12.294 16.475 21.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.041 4.041 3 N -0.150 5.150 4 C -0.438 4.438 5 H 0.131 0.869 6 C -0.145 4.145 7 N -0.481 5.481 8 Si 0.705 3.295 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.187 1.187 12 C 0.309 3.691 13 O -0.441 6.441 14 C -0.180 4.180 15 C -0.115 4.115 16 N -0.115 5.115 17 N -0.078 5.078 18 C 0.088 3.912 19 C -0.128 4.128 20 C -0.105 4.105 21 C -0.072 4.072 22 Cl -0.038 7.038 23 C -0.108 4.108 24 C -0.126 4.126 25 N -0.058 5.058 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.233 0.767 33 H 0.169 0.831 34 H 0.163 0.837 35 H 0.162 0.838 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.836 -12.933 16.858 22.646 hybrid contribution 0.797 -0.248 -0.302 0.888 sum -7.039 -13.181 16.555 22.302 Atomic orbital electron populations 1.21946 0.95838 1.00677 1.02113 1.22051 0.95229 0.85017 1.01851 1.43694 1.54102 1.11722 1.05492 1.19164 1.40977 0.97080 0.86546 0.86925 1.25353 0.96003 0.98495 0.94610 1.69744 1.39982 1.39667 0.98725 0.86968 0.79981 0.82980 0.79604 1.19884 1.21131 1.18669 1.16639 0.84593 0.87347 0.80543 1.90682 1.48800 1.19787 1.84804 1.23768 1.05222 0.90912 0.98080 1.25141 0.96461 1.00218 0.89699 1.77871 1.18396 0.94305 1.20917 1.48324 1.45753 1.11832 1.01925 1.17395 0.97772 0.82986 0.93025 1.20974 0.99455 0.91222 1.01135 1.20924 0.98248 0.97977 0.93380 1.20994 1.02653 0.89598 0.93966 1.98380 1.82496 1.36165 1.86731 1.20894 0.98361 0.91194 1.00333 1.20851 0.99893 0.98979 0.92896 1.74219 1.13052 1.17842 1.00692 0.92993 0.92047 0.92908 0.91192 0.90155 0.91170 0.76716 0.83076 0.83689 0.83839 0.83295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.52 37.16 0.35 -2.27 16 2 C 0.08 1.69 4.33 -4.04 -0.02 1.68 16 3 N -0.43 -10.47 2.25 -115.95 -0.26 -10.73 16 4 C -0.31 -8.52 9.40 -14.99 -0.14 -8.66 16 5 H 0.11 3.43 7.88 -52.48 -0.41 3.02 16 6 C 0.06 1.70 5.28 -17.46 -0.09 1.61 16 7 N -0.85 -23.42 13.95 55.50 0.77 -22.65 16 8 Si 0.88 20.11 24.95 -169.99 -4.24 15.87 16 9 H -0.27 -5.77 6.64 56.52 0.38 -5.39 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.26 -6.10 7.11 56.52 0.40 -5.70 16 12 C 0.52 12.32 7.59 -12.42 -0.09 12.23 16 13 O -0.56 -14.71 16.76 5.28 0.09 -14.63 16 14 C -0.01 -0.23 6.47 -82.99 -0.54 -0.77 16 15 C 0.08 1.25 11.91 -16.89 -0.20 1.05 16 16 N -0.29 -4.47 11.90 30.86 0.37 -4.11 16 17 N -0.19 -2.96 4.44 32.48 0.14 -2.81 16 18 C 0.18 2.31 6.74 -83.60 -0.56 1.74 16 19 C -0.11 -1.19 9.61 -39.40 -0.38 -1.57 16 20 C -0.09 -0.78 9.82 -39.58 -0.39 -1.17 16 21 C -0.04 -0.40 6.32 -39.46 -0.25 -0.65 16 22 Cl -0.07 -0.55 28.95 -51.86 -1.50 -2.05 16 23 C -0.09 -0.76 9.82 -39.57 -0.39 -1.15 16 24 C -0.10 -1.09 9.65 -39.40 -0.38 -1.47 16 25 N -0.22 -3.79 6.31 33.28 0.21 -3.58 16 26 H 0.05 0.94 6.73 -51.93 -0.35 0.59 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.50 3.10 -51.93 -0.16 1.34 16 30 H 0.08 1.55 5.66 -51.92 -0.29 1.26 16 31 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.22 2.87 8.06 -52.49 -0.42 2.45 16 33 H 0.15 1.72 7.67 -52.49 -0.40 1.31 16 34 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 35 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 36 H 0.15 1.46 7.67 -52.48 -0.40 1.06 16 LS Contribution 324.31 15.07 4.89 4.89 Total: -1.00 -30.55 324.31 -5.91 -36.46 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -3.30 Total: 2.75 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -3.08 Total: 0.59 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 1.23 Total: -43.88 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.09 Total: -14.63 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.24 Total: 15.87 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.50 Total: -2.05 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.55 -5.91 -36.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751700200.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.683 kcal (2) G-P(sol) polarization free energy of solvation -30.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds