Wall clock time and date at job start Tue Mar 31 2020 12:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47351 * 2 1 4 4 C 1.36910 * 119.99562 * 264.80218 * 3 2 1 5 5 H 1.08003 * 119.99345 * 146.34767 * 4 3 2 6 6 C 1.39020 * 120.00374 * 326.35340 * 4 3 2 7 7 N 1.31372 * 120.00092 * 156.43963 * 6 4 3 8 8 Si 1.86804 * 119.99759 * 336.43142 * 6 4 3 9 9 H 1.48504 * 109.46667 * 95.32274 * 8 6 4 10 10 H 1.48503 * 109.47337 * 215.31982 * 8 6 4 11 11 H 1.48495 * 109.47551 * 335.32387 * 8 6 4 12 12 C 1.34775 * 120.00265 * 84.80846 * 3 2 1 13 13 O 1.21592 * 119.99859 * 175.17919 * 12 3 2 14 14 C 1.47652 * 119.99567 * 355.17391 * 12 3 2 15 15 C 1.40660 * 126.05100 * 180.99761 * 14 12 3 16 16 N 1.31242 * 106.62273 * 179.82883 * 15 14 12 17 17 N 1.40114 * 107.19006 * 0.42457 * 16 15 14 18 18 C 1.40132 * 125.55947 * 179.75621 * 17 16 15 19 19 C 1.38869 * 120.05586 * 179.68618 * 18 17 16 20 20 C 1.38095 * 119.93995 * 179.76471 * 19 18 17 21 21 C 1.38395 * 120.06090 * 0.48344 * 20 19 18 22 22 Cl 1.73594 * 119.94624 * 179.74359 * 21 20 19 23 23 C 1.38404 * 120.10883 * 359.76624 * 21 20 19 24 24 C 1.38098 * 120.05483 * 0.02562 * 23 21 20 25 25 N 1.28706 * 108.87834 * 359.71789 * 17 16 15 26 26 H 1.08994 * 109.46854 * 305.88346 * 1 2 3 27 27 H 1.09005 * 109.46863 * 65.87742 * 1 2 3 28 28 H 1.09002 * 109.47131 * 185.87673 * 1 2 3 29 29 H 1.09000 * 109.47153 * 239.99489 * 2 1 3 30 30 H 1.09007 * 109.47101 * 119.99952 * 2 1 3 31 31 H 0.97009 * 120.00026 * 179.97438 * 7 6 4 32 32 H 1.07997 * 126.68661 * 359.97438 * 15 14 12 33 33 H 1.07997 * 120.02496 * 359.97438 * 19 18 17 34 34 H 1.08005 * 119.96524 * 180.21079 * 20 19 18 35 35 H 1.08001 * 119.97196 * 179.97438 * 23 21 20 36 36 H 1.08007 * 120.02221 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3478 1.9907 -1.1809 5 1 2.1826 3.0507 -1.3058 6 6 2.8949 1.2452 -2.2190 7 7 2.7887 1.6682 -3.4582 8 14 3.7810 -0.3577 -1.8517 9 1 2.8381 -1.4932 -2.0152 10 1 4.9195 -0.5205 -2.7913 11 1 4.2899 -0.3338 -0.4569 12 6 2.1435 2.0518 1.1624 13 8 2.6307 3.1658 1.1721 14 6 1.6888 1.4336 2.4238 15 6 1.7399 2.0230 3.7000 16 7 1.2378 1.1470 4.5384 17 7 0.8848 0.0148 3.7924 18 6 0.3163 -1.1571 4.3093 19 6 0.0045 -2.2116 3.4612 20 6 -0.5513 -3.3672 3.9739 21 6 -0.8067 -3.4711 5.3301 22 17 -1.5115 -4.9226 5.9703 23 6 -0.5016 -2.4196 6.1766 24 6 0.0582 -1.2635 5.6696 25 7 1.1672 0.2270 2.5547 26 1 -0.3633 0.6023 0.8326 27 1 -0.3633 0.4200 -0.9380 28 1 -0.3633 -1.0223 0.1052 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 3.1708 1.1482 -4.1826 32 1 2.1164 3.0058 3.9422 33 1 0.1995 -2.1292 2.4022 34 1 -0.7908 -4.1889 3.3151 35 1 -0.7023 -2.5029 7.2346 36 1 0.2957 -0.4430 6.3306 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751700200.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:51 Heat of formation + Delta-G solvation = 108.407640 kcal Electronic energy + Delta-G solvation = -24137.184143 eV Core-core repulsion = 20457.730573 eV Total energy + Delta-G solvation = -3679.453569 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.078 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.81977 -40.66551 -40.19513 -37.57842 -37.22264 -34.82317 -34.52584 -33.39330 -32.22212 -31.45950 -30.54117 -27.57736 -25.55433 -24.73788 -24.55778 -23.15630 -22.48991 -21.09329 -19.48504 -18.96897 -17.96023 -17.84503 -17.60907 -17.45424 -16.61430 -16.12638 -15.83127 -15.58711 -15.29821 -15.04518 -14.70291 -14.63524 -14.50447 -14.39691 -13.83601 -13.56715 -13.17986 -13.07176 -12.88742 -12.78756 -12.69594 -12.60370 -12.29699 -11.94589 -11.83339 -11.77618 -11.47328 -11.19009 -11.03033 -10.70558 -10.27731 -9.88541 -9.33556 -8.59550 -6.14931 -0.72363 0.08786 0.51480 0.76511 0.78173 1.07276 1.16817 1.31728 1.41024 2.11647 2.23540 2.42287 2.44547 2.64905 2.95656 3.58604 3.67647 3.73628 3.84496 3.97242 4.06127 4.15508 4.34384 4.39564 4.41857 4.49632 4.75223 4.80823 4.83985 4.88646 4.96706 5.01659 5.16629 5.26567 5.36166 5.45137 5.72737 5.96916 6.39421 6.64547 6.81119 7.16718 7.70206 8.56314 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.018199 B = 0.003653 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.150125 B = 7662.723479 C = 8784.191301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.081 3.919 3 N -0.447 5.447 4 C -0.334 4.334 5 H 0.059 0.941 6 C 0.024 3.976 7 N -0.891 5.891 8 Si 0.939 3.061 9 H -0.236 1.236 10 H -0.281 1.281 11 H -0.268 1.268 12 C 0.527 3.473 13 O -0.598 6.598 14 C -0.047 4.047 15 C 0.080 3.920 16 N -0.281 5.281 17 N -0.171 5.171 18 C 0.137 3.863 19 C -0.106 4.106 20 C -0.082 4.082 21 C -0.038 4.038 22 Cl -0.054 7.054 23 C -0.082 4.082 24 C -0.097 4.097 25 N -0.203 5.203 26 H 0.046 0.954 27 H 0.043 0.957 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.285 0.715 32 H 0.237 0.763 33 H 0.150 0.850 34 H 0.168 0.832 35 H 0.171 0.829 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.603 -16.145 19.238 26.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.041 4.041 3 N -0.167 5.167 4 C -0.462 4.462 5 H 0.077 0.923 6 C -0.181 4.181 7 N -0.527 5.527 8 Si 0.763 3.237 9 H -0.161 1.161 10 H -0.208 1.208 11 H -0.192 1.192 12 C 0.315 3.685 13 O -0.482 6.482 14 C -0.212 4.212 15 C -0.110 4.110 16 N -0.109 5.109 17 N -0.063 5.063 18 C 0.047 3.953 19 C -0.128 4.128 20 C -0.101 4.101 21 C -0.065 4.065 22 Cl -0.025 7.025 23 C -0.101 4.101 24 C -0.118 4.118 25 N -0.048 5.048 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.112 0.888 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.253 0.747 33 H 0.168 0.832 34 H 0.186 0.814 35 H 0.188 0.812 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.933 -16.798 19.612 27.324 hybrid contribution 0.946 0.798 -0.877 1.517 sum -7.987 -16.000 18.734 25.899 Atomic orbital electron populations 1.21883 0.93867 1.02986 1.00936 1.22219 0.96911 0.82845 1.02141 1.43755 1.55127 1.13153 1.04621 1.18740 1.43346 0.95368 0.88772 0.92279 1.26015 0.95867 1.02274 0.93895 1.69827 1.41285 1.41861 0.99735 0.85992 0.79176 0.79687 0.78855 1.16096 1.20759 1.19221 1.17132 0.83018 0.86621 0.81742 1.90636 1.50040 1.21525 1.85965 1.23027 1.08772 0.92373 0.97060 1.25420 0.96142 1.01117 0.88357 1.77893 1.18475 0.94127 1.20407 1.48630 1.43878 1.12472 1.01284 1.17857 1.00454 0.82665 0.94371 1.21067 0.99313 0.91382 1.01005 1.21149 0.97308 0.97793 0.93897 1.21187 1.01339 0.89936 0.94077 1.98398 1.82154 1.35416 1.86543 1.21169 0.97091 0.90157 1.01660 1.20985 0.99186 0.99729 0.91942 1.74059 1.11897 1.16916 1.01892 0.93519 0.93804 0.88786 0.91817 0.88568 0.90525 0.74706 0.83246 0.81446 0.81170 0.82813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.78 9.52 71.98 0.69 -4.09 16 2 C 0.08 3.28 4.33 86.38 0.37 3.66 16 3 N -0.45 -22.42 2.25 -639.01 -1.44 -23.86 16 4 C -0.33 -19.51 9.40 84.09 0.79 -18.72 16 5 H 0.06 3.97 7.88 -2.91 -0.02 3.94 16 6 C 0.02 1.34 5.28 84.95 0.45 1.79 16 7 N -0.89 -51.39 13.95 21.68 0.30 -51.08 16 8 Si 0.94 41.52 24.95 68.60 1.71 43.24 16 9 H -0.24 -9.05 6.64 99.48 0.66 -8.39 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 C 0.53 25.77 7.59 86.73 0.66 26.42 16 13 O -0.60 -33.20 16.76 -4.01 -0.07 -33.26 16 14 C -0.05 -1.80 6.47 42.18 0.27 -1.53 16 15 C 0.08 2.54 11.91 85.37 1.02 3.56 16 16 N -0.28 -8.23 11.90 -56.28 -0.67 -8.90 16 17 N -0.17 -4.98 4.44 -51.14 -0.23 -5.21 16 18 C 0.14 3.11 6.74 38.11 0.26 3.37 16 19 C -0.11 -2.03 9.61 22.39 0.22 -1.82 16 20 C -0.08 -1.17 9.82 22.27 0.22 -0.95 16 21 C -0.04 -0.52 6.32 22.35 0.14 -0.38 16 22 Cl -0.05 -0.67 28.95 -2.72 -0.08 -0.75 16 23 C -0.08 -1.06 9.82 22.28 0.22 -0.84 16 24 C -0.10 -1.70 9.65 22.39 0.22 -1.48 16 25 N -0.20 -6.83 6.31 -48.61 -0.31 -7.14 16 26 H 0.05 1.64 6.73 -2.39 -0.02 1.63 16 27 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.06 2.64 3.10 -2.39 -0.01 2.63 16 30 H 0.10 3.55 5.66 -2.38 -0.01 3.54 16 31 H 0.28 14.93 8.31 -92.70 -0.77 14.16 16 32 H 0.24 6.15 8.06 -2.91 -0.02 6.12 16 33 H 0.15 2.90 7.67 -2.91 -0.02 2.87 16 34 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 35 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 36 H 0.15 2.54 7.67 -2.91 -0.02 2.51 16 Total: -1.00 -70.62 324.31 5.83 -64.79 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 1.09 Total: 13.20 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 5.51 Total: 8.98 kcal Atomic # 7 Polarization: -93.85 SS G_CDS: -2.34 Total: -96.19 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.07 Total: -33.26 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.71 Total: 43.24 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -0.08 Total: -0.75 kcal Total: -70.62 5.83 -64.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751700200.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.194 kcal (2) G-P(sol) polarization free energy of solvation -70.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds