Wall clock time and date at job start Tue Mar 31 2020 12:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86793 * 119.99943 * 2 1 4 4 H 1.48503 * 109.47291 * 269.99829 * 3 2 1 5 5 H 1.48497 * 109.47506 * 30.00085 * 3 2 1 6 6 H 1.48501 * 109.47205 * 150.00337 * 3 2 1 7 7 C 1.38801 * 119.99847 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00044 * 0.02562 * 7 2 1 9 9 S 1.76195 * 119.99964 * 179.97438 * 7 2 1 10 10 C 1.81002 * 100.00232 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47401 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47242 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.47070 * 180.02562 * 12 11 10 14 14 C 1.34234 * 116.99938 * 179.97438 * 13 12 11 15 15 O 1.20822 * 119.99973 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00068 * 179.97438 * 14 13 12 17 17 C 1.50697 * 109.47266 * 180.02562 * 16 14 13 18 18 C 1.33993 * 126.90420 * 265.02210 * 17 16 14 19 19 O 1.34448 * 110.15516 * 179.97438 * 18 17 16 20 20 C 1.34805 * 110.88700 * 0.02562 * 19 18 17 21 21 C 1.38948 * 133.49264 * 180.02562 * 20 19 18 22 22 C 1.37844 * 119.81737 * 179.97438 * 21 20 19 23 23 C 1.38748 * 120.68488 * 359.97438 * 22 21 20 24 24 C 1.36735 * 120.41744 * 359.97438 * 23 22 21 25 25 C 1.39409 * 119.71652 * 359.76340 * 24 23 22 26 26 H 0.96994 * 120.00012 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46764 * 60.00066 * 10 9 7 28 28 H 1.08999 * 109.47096 * 300.00054 * 10 9 7 29 29 H 1.08998 * 109.46945 * 59.99571 * 11 10 9 30 30 H 1.08999 * 109.47046 * 300.00093 * 11 10 9 31 31 H 1.08996 * 109.47090 * 59.99784 * 12 11 10 32 32 H 1.08999 * 109.47084 * 299.99957 * 12 11 10 33 33 H 1.09004 * 109.46932 * 300.00373 * 16 14 13 34 34 H 1.08997 * 109.47392 * 59.99712 * 16 14 13 35 35 H 1.08001 * 124.92097 * 359.95797 * 18 17 16 36 36 H 1.08002 * 120.09254 * 359.96896 * 21 20 19 37 37 H 1.07997 * 119.66085 * 179.97438 * 22 21 20 38 38 H 1.07997 * 119.78740 * 179.97438 * 23 22 21 39 39 H 1.08005 * 120.14117 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9846 -0.0009 11 6 5.5957 -3.2364 -0.0021 12 6 5.8614 -4.7432 -0.0025 13 8 7.2936 -4.9821 -0.0030 14 6 7.6979 -6.2621 -0.0029 15 8 6.8820 -7.1533 -0.0029 16 6 9.1693 -6.5876 -0.0040 17 6 9.3530 -8.0833 -0.0042 18 6 9.5441 -8.8707 1.0630 19 8 9.6668 -10.1526 0.6769 20 6 9.5620 -10.2633 -0.6626 21 6 9.6156 -11.3390 -1.5404 22 6 9.4697 -11.1266 -2.8945 23 6 9.2687 -9.8474 -3.3930 24 6 9.2118 -8.7755 -2.5460 25 6 9.3518 -8.9714 -1.1729 26 1 -0.4850 0.8400 -0.0004 27 1 3.6433 -3.4318 -0.8907 28 1 3.6440 -3.4315 0.8893 29 1 6.0394 -2.7891 0.8873 30 1 6.0379 -2.7896 -0.8926 31 1 5.4178 -5.1901 -0.8922 32 1 5.4192 -5.1903 0.8877 33 1 9.6343 -6.1646 -0.8945 34 1 9.6358 -6.1640 0.8854 35 1 9.5928 -8.5255 2.0852 36 1 9.7713 -12.3388 -1.1628 37 1 9.5122 -11.9645 -3.5746 38 1 9.1566 -9.6976 -4.4566 39 1 9.0548 -7.7817 -2.9388 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805568954.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:08 Heat of formation + Delta-G solvation = -72.826894 kcal Electronic energy + Delta-G solvation = -22461.113939 eV Core-core repulsion = 18847.092750 eV Total energy + Delta-G solvation = -3614.021190 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.091 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.83506 -40.47974 -38.19468 -36.89895 -34.38197 -33.62045 -32.47130 -31.00081 -30.34351 -28.70372 -26.46805 -25.59491 -23.68372 -22.67253 -22.06126 -21.41365 -20.13786 -17.92801 -17.74363 -17.47582 -17.32153 -16.76968 -16.56457 -16.15043 -16.01443 -15.02387 -14.97126 -14.50672 -14.35412 -14.15095 -13.74752 -13.29691 -13.14600 -12.88642 -12.84204 -12.62568 -12.49369 -12.40018 -12.01522 -11.56216 -11.25634 -11.23249 -11.11597 -10.99971 -10.77928 -10.41346 -10.38455 -10.19405 -9.84141 -9.04118 -8.97461 -8.63569 -8.53963 -7.00153 -6.31462 -4.05024 0.56013 1.02368 1.79528 2.07659 2.42673 2.62737 3.01926 3.27675 3.39437 3.42376 3.54735 4.04164 4.10045 4.28189 4.42508 4.55068 4.63429 4.69422 4.81408 4.95546 5.00601 5.01686 5.05622 5.07445 5.09481 5.13207 5.20842 5.36344 5.51237 5.65420 5.72361 5.84978 5.90824 6.00821 6.04554 6.11155 6.26977 6.30776 6.36869 6.54947 6.79503 7.64882 7.92136 8.41462 9.13755 10.77916 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.030926 B = 0.001874 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.178640 B =14934.997790 C =15215.510904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.092 3.908 3 Si 0.862 3.138 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.238 1.238 7 C -0.505 4.505 8 H 0.089 0.911 9 S -0.206 6.206 10 C -0.085 4.085 11 C -0.101 4.101 12 C 0.073 3.927 13 O -0.357 6.357 14 C 0.457 3.543 15 O -0.499 6.499 16 C -0.040 4.040 17 C -0.173 4.173 18 C 0.030 3.970 19 O -0.191 6.191 20 C 0.050 3.950 21 C -0.106 4.106 22 C -0.095 4.095 23 C -0.134 4.134 24 C -0.070 4.070 25 C -0.113 4.113 26 H 0.271 0.729 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.210 0.790 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.130 0.870 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.609 -20.011 -2.257 31.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.117 4.117 3 Si 0.687 3.313 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.162 1.162 7 C -0.652 4.652 8 H 0.107 0.893 9 S 0.022 5.978 10 C -0.233 4.233 11 C -0.139 4.139 12 C -0.002 4.002 13 O -0.274 6.274 14 C 0.299 3.701 15 O -0.386 6.386 16 C -0.077 4.077 17 C -0.174 4.174 18 C -0.035 4.035 19 O -0.091 6.091 20 C 0.004 3.996 21 C -0.125 4.125 22 C -0.113 4.113 23 C -0.152 4.152 24 C -0.088 4.088 25 C -0.114 4.114 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.226 0.774 36 H 0.150 0.850 37 H 0.153 0.847 38 H 0.148 0.852 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 24.897 -19.498 -2.086 31.692 hybrid contribution -1.092 -0.106 -0.021 1.097 sum 23.805 -19.604 -2.107 30.910 Atomic orbital electron populations 1.69939 1.05910 1.27768 1.48045 1.24802 0.94537 0.99047 0.93307 0.86664 0.81718 0.83179 0.79740 1.19320 1.20038 1.16156 1.22120 0.86950 0.97515 1.58650 0.89304 1.84154 1.11841 1.04286 1.97558 1.22950 0.96019 1.00092 1.04232 1.21326 0.95914 0.92280 1.04389 1.23220 0.76241 0.97948 1.02794 1.86461 1.28782 1.28425 1.83683 1.23554 0.92396 0.81039 0.73152 1.90704 1.55551 1.47950 1.44384 1.19548 0.90112 0.91135 1.06908 1.20388 1.10272 0.94603 0.92157 1.23764 1.00329 0.79917 0.99492 1.84018 1.75236 1.28380 1.21512 1.19597 1.03011 0.95619 0.81422 1.19949 1.04572 0.96562 0.91396 1.20945 0.99016 0.97592 0.93782 1.20801 1.01876 0.92363 1.00126 1.20298 0.98090 0.99705 0.90679 1.19700 1.04893 0.92551 0.94238 0.91915 0.91030 0.90980 0.90242 0.90268 0.91051 0.91036 0.86519 0.86348 0.77380 0.85017 0.84731 0.85228 0.85666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.58 13.97 55.49 0.78 -25.81 16 2 C 0.09 2.66 5.50 -17.43 -0.10 2.57 16 3 Si 0.86 21.31 27.74 -169.99 -4.71 16.60 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.24 -5.73 6.74 56.52 0.38 -5.35 16 7 C -0.50 -14.55 10.04 30.94 0.31 -14.24 16 8 H 0.09 2.73 8.03 -52.49 -0.42 2.30 16 9 S -0.21 -4.94 19.41 -107.50 -2.09 -7.03 16 10 C -0.08 -1.60 5.67 37.16 0.21 -1.39 16 11 C -0.10 -1.51 5.60 -26.73 -0.15 -1.66 16 12 C 0.07 1.00 5.47 37.16 0.20 1.20 16 13 O -0.36 -4.49 10.22 -39.27 -0.40 -4.89 16 14 C 0.46 5.44 7.95 36.01 0.29 5.72 16 15 O -0.50 -7.68 15.78 -18.75 -0.30 -7.98 16 16 C -0.04 -0.31 6.36 -29.04 -0.18 -0.49 16 17 C -0.17 -1.64 4.85 -102.66 -0.50 -2.14 16 18 C 0.03 0.26 11.89 29.24 0.35 0.60 16 19 O -0.19 -1.98 10.58 3.92 0.04 -1.94 16 20 C 0.05 0.54 7.42 -38.47 -0.29 0.25 16 21 C -0.11 -0.91 10.07 -39.46 -0.40 -1.30 16 22 C -0.10 -0.69 10.01 -39.54 -0.40 -1.09 16 23 C -0.13 -1.05 9.98 -39.94 -0.40 -1.45 16 24 C -0.07 -0.66 10.05 -39.69 -0.40 -1.06 16 25 C -0.11 -1.22 6.38 -105.16 -0.67 -1.89 16 26 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.07 1.35 8.14 -51.91 -0.42 0.93 16 28 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 32 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 33 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.21 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 38 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 357.64 15.07 5.39 5.39 Total: -1.00 -34.82 357.64 -8.48 -43.30 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -5.07 Total: -1.28 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -2.12 Total: -16.36 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.78 Total: -25.81 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.66 Total: -14.81 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.71 Total: 16.60 kcal Atomic # 16 Polarization: -4.94 SS G_CDS: -2.09 Total: -7.03 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.82 -8.48 -43.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805568954.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.529 kcal (2) G-P(sol) polarization free energy of solvation -34.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds