Wall clock time and date at job start Tue Mar 31 2020 12:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86793 * 119.99943 * 2 1 4 4 H 1.48503 * 109.47291 * 269.99829 * 3 2 1 5 5 H 1.48497 * 109.47506 * 30.00085 * 3 2 1 6 6 H 1.48501 * 109.47205 * 150.00337 * 3 2 1 7 7 C 1.38801 * 119.99847 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00044 * 0.02562 * 7 2 1 9 9 S 1.76195 * 119.99964 * 179.97438 * 7 2 1 10 10 C 1.81002 * 100.00232 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47401 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47242 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.47070 * 180.02562 * 12 11 10 14 14 C 1.34234 * 116.99938 * 179.97438 * 13 12 11 15 15 O 1.20822 * 119.99973 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00068 * 179.97438 * 14 13 12 17 17 C 1.50697 * 109.47266 * 180.02562 * 16 14 13 18 18 C 1.33993 * 126.90420 * 265.02210 * 17 16 14 19 19 O 1.34448 * 110.15516 * 179.97438 * 18 17 16 20 20 C 1.34805 * 110.88700 * 0.02562 * 19 18 17 21 21 C 1.38948 * 133.49264 * 180.02562 * 20 19 18 22 22 C 1.37844 * 119.81737 * 179.97438 * 21 20 19 23 23 C 1.38748 * 120.68488 * 359.97438 * 22 21 20 24 24 C 1.36735 * 120.41744 * 359.97438 * 23 22 21 25 25 C 1.39409 * 119.71652 * 359.76340 * 24 23 22 26 26 H 0.96994 * 120.00012 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46764 * 60.00066 * 10 9 7 28 28 H 1.08999 * 109.47096 * 300.00054 * 10 9 7 29 29 H 1.08998 * 109.46945 * 59.99571 * 11 10 9 30 30 H 1.08999 * 109.47046 * 300.00093 * 11 10 9 31 31 H 1.08996 * 109.47090 * 59.99784 * 12 11 10 32 32 H 1.08999 * 109.47084 * 299.99957 * 12 11 10 33 33 H 1.09004 * 109.46932 * 300.00373 * 16 14 13 34 34 H 1.08997 * 109.47392 * 59.99712 * 16 14 13 35 35 H 1.08001 * 124.92097 * 359.95797 * 18 17 16 36 36 H 1.08002 * 120.09254 * 359.96896 * 21 20 19 37 37 H 1.07997 * 119.66085 * 179.97438 * 22 21 20 38 38 H 1.07997 * 119.78740 * 179.97438 * 23 22 21 39 39 H 1.08005 * 120.14117 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9846 -0.0009 11 6 5.5957 -3.2364 -0.0021 12 6 5.8614 -4.7432 -0.0025 13 8 7.2936 -4.9821 -0.0030 14 6 7.6979 -6.2621 -0.0029 15 8 6.8820 -7.1533 -0.0029 16 6 9.1693 -6.5876 -0.0040 17 6 9.3530 -8.0833 -0.0042 18 6 9.5441 -8.8707 1.0630 19 8 9.6668 -10.1526 0.6769 20 6 9.5620 -10.2633 -0.6626 21 6 9.6156 -11.3390 -1.5404 22 6 9.4697 -11.1266 -2.8945 23 6 9.2687 -9.8474 -3.3930 24 6 9.2118 -8.7755 -2.5460 25 6 9.3518 -8.9714 -1.1729 26 1 -0.4850 0.8400 -0.0004 27 1 3.6433 -3.4318 -0.8907 28 1 3.6440 -3.4315 0.8893 29 1 6.0394 -2.7891 0.8873 30 1 6.0379 -2.7896 -0.8926 31 1 5.4178 -5.1901 -0.8922 32 1 5.4192 -5.1903 0.8877 33 1 9.6343 -6.1646 -0.8945 34 1 9.6358 -6.1640 0.8854 35 1 9.5928 -8.5255 2.0852 36 1 9.7713 -12.3388 -1.1628 37 1 9.5122 -11.9645 -3.5746 38 1 9.1566 -9.6976 -4.4566 39 1 9.0548 -7.7817 -2.9388 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805568954.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:07 Heat of formation + Delta-G solvation = -92.199203 kcal Electronic energy + Delta-G solvation = -22461.953986 eV Core-core repulsion = 18847.092750 eV Total energy + Delta-G solvation = -3614.861236 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.091 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.48340 -41.46544 -38.80064 -37.93255 -35.11704 -34.86659 -34.68818 -31.62755 -30.99108 -29.44109 -28.10309 -27.39842 -24.31094 -23.30428 -23.10667 -22.55663 -20.86476 -19.64664 -18.74490 -18.37221 -18.11711 -17.75977 -17.41871 -17.10868 -16.94073 -16.63736 -16.11687 -15.99156 -15.12419 -14.95419 -14.76682 -14.57532 -14.38352 -14.11307 -13.91009 -13.67682 -13.35508 -13.25492 -13.10176 -13.03604 -12.62158 -12.59993 -12.39047 -12.25892 -11.85578 -11.82368 -11.61155 -11.52363 -11.17216 -10.97792 -10.61701 -9.62712 -9.16710 -9.01527 -8.52727 -6.25122 -0.05798 0.37000 1.00612 1.15851 1.17077 1.32940 1.47359 1.61846 1.83273 1.98606 2.24402 2.65040 2.75507 2.85188 3.43982 3.49550 3.72749 3.81645 3.86179 3.95713 4.05771 4.12193 4.15065 4.26952 4.38274 4.43170 4.50600 4.53766 4.58299 4.64166 4.64870 4.93930 4.98432 5.09351 5.23175 5.31605 5.39032 5.49183 5.50159 5.68412 5.68509 6.09425 6.15358 6.70846 6.90590 8.60330 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.030926 B = 0.001874 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.178640 B =14934.997790 C =15215.510904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.036 3.964 3 Si 0.928 3.072 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.226 1.226 7 C -0.527 4.527 8 H 0.050 0.950 9 S -0.204 6.204 10 C -0.075 4.075 11 C -0.087 4.087 12 C 0.079 3.921 13 O -0.353 6.353 14 C 0.458 3.542 15 O -0.539 6.539 16 C -0.030 4.030 17 C -0.194 4.194 18 C 0.031 3.969 19 O -0.205 6.205 20 C 0.019 3.981 21 C -0.117 4.117 22 C -0.095 4.095 23 C -0.136 4.136 24 C -0.092 4.092 25 C -0.138 4.138 26 H 0.277 0.723 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.136 0.864 34 H 0.155 0.845 35 H 0.245 0.755 36 H 0.149 0.851 37 H 0.166 0.834 38 H 0.153 0.847 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.158 -19.695 -2.403 33.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.169 4.169 3 Si 0.748 3.252 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.149 1.149 7 C -0.674 4.674 8 H 0.068 0.932 9 S 0.024 5.976 10 C -0.224 4.224 11 C -0.125 4.125 12 C 0.003 3.997 13 O -0.270 6.270 14 C 0.303 3.697 15 O -0.428 6.428 16 C -0.067 4.067 17 C -0.195 4.195 18 C -0.034 4.034 19 O -0.106 6.106 20 C -0.027 4.027 21 C -0.135 4.135 22 C -0.113 4.113 23 C -0.154 4.154 24 C -0.110 4.110 25 C -0.139 4.139 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.154 0.846 34 H 0.173 0.827 35 H 0.261 0.739 36 H 0.167 0.833 37 H 0.183 0.817 38 H 0.170 0.830 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 27.462 -19.188 -2.235 33.576 hybrid contribution -1.891 -0.388 -0.008 1.930 sum 25.571 -19.576 -2.243 32.282 Atomic orbital electron populations 1.70045 1.07732 1.29185 1.49034 1.25830 0.95468 1.02944 0.92669 0.85684 0.80802 0.78376 0.80305 1.18503 1.18791 1.14908 1.22357 0.90182 0.96302 1.58590 0.93186 1.83771 1.07374 1.08825 1.97587 1.22983 0.99094 0.96201 1.04092 1.21143 0.92696 0.93459 1.05201 1.22966 0.77314 0.96699 1.02682 1.86461 1.27656 1.29163 1.83731 1.24407 0.93783 0.80032 0.71491 1.90696 1.56937 1.48813 1.46374 1.19706 0.87086 0.90377 1.09510 1.20660 1.11256 0.95516 0.92083 1.24521 0.98846 0.79140 1.00900 1.83997 1.75515 1.29499 1.21622 1.20042 1.04393 0.96499 0.81779 1.20343 1.04277 0.97031 0.91849 1.21358 0.97728 0.98421 0.93794 1.21179 1.00708 0.92286 1.01207 1.20558 0.99038 1.00687 0.90684 1.20092 1.05445 0.93191 0.95197 0.91366 0.91291 0.91148 0.89350 0.89500 0.91409 0.91122 0.84605 0.82749 0.73892 0.83334 0.81699 0.82961 0.85027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.74 13.97 21.65 0.30 -56.44 16 2 C 0.04 2.09 5.50 84.86 0.47 2.55 16 3 Si 0.93 43.52 27.74 68.60 1.90 45.42 16 4 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.23 -10.09 6.74 99.48 0.67 -9.42 16 7 C -0.53 -30.93 10.04 67.95 0.68 -30.25 16 8 H 0.05 3.21 8.03 -2.91 -0.02 3.18 16 9 S -0.20 -9.57 19.41 -56.49 -1.10 -10.67 16 10 C -0.08 -2.79 5.67 71.98 0.41 -2.38 16 11 C -0.09 -2.43 5.60 30.59 0.17 -2.26 16 12 C 0.08 2.04 5.47 71.98 0.39 2.44 16 13 O -0.35 -8.16 10.22 -51.46 -0.53 -8.69 16 14 C 0.46 10.19 7.95 71.24 0.57 10.76 16 15 O -0.54 -16.35 15.78 21.98 0.35 -16.00 16 16 C -0.03 -0.40 6.36 29.10 0.19 -0.21 16 17 C -0.19 -3.47 4.85 -18.60 -0.09 -3.56 16 18 C 0.03 0.48 11.89 66.85 0.79 1.27 16 19 O -0.20 -4.22 10.58 -8.88 -0.09 -4.32 16 20 C 0.02 0.42 7.42 22.99 0.17 0.59 16 21 C -0.12 -1.92 10.07 22.35 0.23 -1.69 16 22 C -0.10 -1.25 10.01 22.30 0.22 -1.03 16 23 C -0.14 -1.98 9.98 22.04 0.22 -1.76 16 24 C -0.09 -1.69 10.05 22.20 0.22 -1.47 16 25 C -0.14 -2.95 6.38 -20.21 -0.13 -3.08 16 26 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 27 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.07 2.64 8.14 -2.40 -0.02 2.62 16 29 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.07 1.81 8.13 -2.39 -0.02 1.79 16 32 H 0.07 1.85 8.13 -2.39 -0.02 1.83 16 33 H 0.14 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.15 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.25 1.56 8.06 -2.91 -0.02 1.53 16 36 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.17 1.04 8.06 -2.91 -0.02 1.01 16 38 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 39 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -77.26 357.64 6.36 -70.90 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 1.02 Total: 9.88 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 4.51 Total: -30.09 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.30 Total: -56.44 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.27 Total: -29.00 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.90 Total: 45.42 kcal Atomic # 16 Polarization: -9.57 SS G_CDS: -1.10 Total: -10.67 kcal Total: -77.26 6.36 -70.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805568954.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.301 kcal (2) G-P(sol) polarization free energy of solvation -77.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds