Wall clock time and date at job start Tue Mar 31 2020 13:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35846 * 120.90596 * 2 1 4 4 C 1.41008 * 119.82717 * 179.97438 * 3 2 1 5 5 O 1.21794 * 119.15648 * 180.02562 * 4 3 2 6 6 O 1.34224 * 121.68474 * 359.71455 * 4 3 2 7 7 C 1.35029 * 121.46423 * 0.57568 * 6 4 3 8 8 C 1.38683 * 120.73566 * 179.71493 * 7 6 4 9 9 C 1.38516 * 119.78425 * 179.68151 * 8 7 6 10 10 O 1.35739 * 119.73010 * 179.97438 * 9 8 7 11 11 C 1.42899 * 117.00210 * 180.02562 * 10 9 8 12 12 C 1.53011 * 109.47056 * 180.02562 * 11 10 9 13 13 S 1.81394 * 109.46920 * 180.02562 * 12 11 10 14 14 C 1.81404 * 102.99993 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47117 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00258 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99671 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00237 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99598 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47295 * 60.00127 * 19 17 15 21 21 H 1.48506 * 109.46852 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47032 * 299.99900 * 19 17 15 23 23 C 1.39378 * 120.54187 * 0.04174 * 9 8 7 24 24 C 1.36456 * 120.42984 * 359.97438 * 23 9 8 25 25 C 1.39961 * 119.79740 * 359.97438 * 24 23 9 26 26 H 1.08998 * 109.47560 * 270.02631 * 1 2 3 27 27 H 1.09007 * 109.47132 * 30.02582 * 1 2 3 28 28 H 1.08996 * 109.47395 * 150.02135 * 1 2 3 29 29 H 1.08000 * 120.08776 * 359.95718 * 3 2 1 30 30 H 1.07991 * 120.10851 * 359.67931 * 8 7 6 31 31 H 1.08997 * 109.47330 * 299.99920 * 11 10 9 32 32 H 1.09002 * 109.47209 * 60.00744 * 11 10 9 33 33 H 1.08997 * 109.46635 * 299.99916 * 12 11 10 34 34 H 1.08994 * 109.47009 * 59.99824 * 12 11 10 35 35 H 1.09000 * 109.46848 * 299.99400 * 14 13 12 36 36 H 1.08999 * 109.47172 * 59.99825 * 14 13 12 37 37 H 0.97002 * 120.00356 * 179.97438 * 18 17 15 38 38 H 1.08004 * 119.78381 * 179.97438 * 23 9 8 39 39 H 1.08004 * 120.09999 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2047 1.1656 0.0000 4 6 3.6145 1.1390 0.0005 5 8 4.2278 2.1913 0.0010 6 8 4.2979 -0.0162 0.0068 7 6 3.6655 -1.2092 0.0012 8 6 4.3867 -2.3938 0.0019 9 6 3.7177 -3.6067 0.0028 10 8 4.4247 -4.7654 0.0029 11 6 3.6758 -5.9824 0.0033 12 6 4.6371 -7.1728 0.0040 13 16 3.6864 -8.7177 0.0037 14 6 4.9778 -9.9916 0.0038 15 6 4.3377 -11.3559 0.0043 16 1 3.2616 -11.4474 0.0041 17 6 5.1259 -12.4871 0.0039 18 7 6.4362 -12.3756 0.0036 19 14 4.3323 -14.1783 0.0037 20 1 3.4881 -14.3288 -1.2086 21 1 5.3896 -15.2211 0.0039 22 1 3.4886 -14.3292 1.2163 23 6 2.3245 -3.6471 0.0022 24 6 1.5995 -2.4911 0.0013 25 6 2.2590 -1.2565 0.0014 26 1 -0.3634 0.0005 1.0276 27 1 -0.3634 0.8898 -0.5143 28 1 -0.3634 -0.8901 -0.5135 29 1 1.6810 2.1101 -0.0007 30 1 5.4664 -2.3706 0.0016 31 1 3.0480 -6.0224 0.8934 32 1 3.0477 -6.0228 -0.8866 33 1 5.2652 -7.1330 -0.8859 34 1 5.2650 -7.1322 0.8940 35 1 5.5974 -9.8809 -0.8862 36 1 5.5972 -9.8810 0.8939 37 1 6.9907 -13.1715 0.0037 38 1 1.8155 -4.5996 0.0025 39 1 0.5202 -2.5286 0.0004 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840215308.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:52 Heat of formation + Delta-G solvation = -80.341021 kcal Electronic energy + Delta-G solvation = -22427.359922 eV Core-core repulsion = 18813.012895 eV Total energy + Delta-G solvation = -3614.347027 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.091 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.23293 -40.31888 -38.44932 -37.28229 -35.57184 -33.24388 -32.12904 -31.05746 -29.48065 -29.19059 -28.64941 -25.10022 -23.78556 -23.65215 -22.78297 -22.02655 -19.96924 -18.66501 -17.84615 -17.26276 -17.09108 -16.56244 -16.41489 -15.90132 -15.41997 -15.30495 -14.68040 -14.48781 -14.31014 -14.19134 -14.14838 -13.98014 -13.45236 -13.30715 -13.03952 -12.62420 -12.48380 -12.38085 -12.22287 -12.09184 -11.98840 -11.38721 -11.15842 -10.90404 -10.81456 -10.61255 -10.16325 -10.14875 -9.70378 -9.25049 -9.07575 -8.69524 -8.42645 -6.90291 -6.27803 -4.33220 -0.12977 0.63105 1.16635 1.81332 2.22768 2.48142 3.22562 3.24565 3.26588 3.27834 3.30625 3.65328 3.76988 3.82406 3.94928 4.27937 4.29092 4.44916 4.65836 4.76024 4.80691 4.81953 4.87075 4.94750 5.09427 5.15094 5.17712 5.29484 5.34510 5.46378 5.65045 5.67452 5.68395 5.81778 5.88784 5.97454 6.85557 6.93914 6.97103 6.99400 7.17523 7.65500 7.89586 8.68057 9.30452 10.83278 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.038404 B = 0.001846 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.914990 B =15162.607019 C =15860.470579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.047 3.953 3 C -0.275 4.275 4 C 0.513 3.487 5 O -0.471 6.471 6 O -0.271 6.271 7 C 0.190 3.810 8 C -0.180 4.180 9 C 0.201 3.799 10 O -0.302 6.302 11 C 0.078 3.922 12 C -0.098 4.098 13 S -0.291 6.291 14 C 0.096 3.904 15 C -0.517 4.517 16 H 0.068 0.932 17 C 0.066 3.934 18 N -0.891 5.891 19 Si 0.909 3.091 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.225 4.225 24 C -0.012 4.012 25 C -0.201 4.201 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.160 0.840 30 H 0.153 0.847 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.267 0.733 38 H 0.146 0.854 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.083 22.919 0.028 25.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.046 3.954 3 C -0.294 4.294 4 C 0.363 3.637 5 O -0.360 6.360 6 O -0.183 6.183 7 C 0.145 3.855 8 C -0.199 4.199 9 C 0.153 3.847 10 O -0.214 6.214 11 C 0.003 3.997 12 C -0.246 4.246 13 S -0.066 6.066 14 C -0.051 4.051 15 C -0.556 4.556 16 H 0.086 0.914 17 C -0.138 4.138 18 N -0.529 5.529 19 Si 0.735 3.265 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.244 4.244 24 C -0.030 4.030 25 C -0.202 4.202 26 H 0.110 0.890 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.178 0.822 30 H 0.171 0.829 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.163 0.837 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.279 23.166 0.029 26.219 hybrid contribution 0.814 -0.822 0.002 1.156 sum -11.465 22.345 0.031 25.115 Atomic orbital electron populations 1.21029 0.89079 1.04451 1.03997 1.21500 0.96822 0.90955 0.86126 1.22287 0.92817 1.00308 1.14032 1.19172 0.88208 0.81061 0.75266 1.90980 1.72109 1.25648 1.47228 1.83549 1.43483 1.13687 1.77540 1.18503 0.89320 0.83066 0.94592 1.19484 1.01597 0.86721 1.12137 1.18785 0.89908 0.86001 0.90039 1.86085 1.36404 1.12475 1.86439 1.22711 0.94053 0.80058 1.02911 1.23121 1.00903 0.94598 1.05998 1.86529 1.21875 1.00018 1.98153 1.21099 0.91701 0.91813 1.00441 1.20601 0.93608 0.88434 1.52976 0.91421 1.24967 0.94811 0.99519 0.94507 1.69935 1.03585 1.30219 1.49143 0.86377 0.78862 0.82228 0.78985 1.19856 1.21000 1.19861 1.21193 0.92789 1.00539 1.09882 1.20693 1.00285 0.89696 0.92363 1.18889 0.91595 0.94485 1.15268 0.89026 0.89800 0.89948 0.82201 0.82929 0.90508 0.90501 0.89577 0.89572 0.94314 0.94314 0.92296 0.83682 0.83890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.41 9.64 36.00 0.35 -0.07 16 2 C 0.05 0.32 6.08 -102.18 -0.62 -0.30 16 3 C -0.28 -2.31 9.62 -39.39 -0.38 -2.69 16 4 C 0.51 6.19 7.89 31.78 0.25 6.44 16 5 O -0.47 -7.12 17.91 -19.60 -0.35 -7.47 16 6 O -0.27 -3.32 9.82 -20.81 -0.20 -3.52 16 7 C 0.19 2.01 6.76 -38.48 -0.26 1.75 16 8 C -0.18 -1.89 9.94 -39.31 -0.39 -2.28 16 9 C 0.20 2.10 6.69 -39.05 -0.26 1.83 16 10 O -0.30 -3.62 10.12 -18.92 -0.19 -3.81 16 11 C 0.08 0.93 4.74 37.16 0.18 1.10 16 12 C -0.10 -1.49 6.31 37.16 0.23 -1.26 16 13 S -0.29 -5.75 21.66 -107.50 -2.33 -8.08 16 14 C 0.10 2.37 5.70 36.01 0.21 2.58 16 15 C -0.52 -13.99 9.13 -34.44 -0.31 -14.30 16 16 H 0.07 1.82 7.71 -52.49 -0.40 1.41 16 17 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 18 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 19 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 C -0.23 -1.88 8.96 -39.80 -0.36 -2.23 16 24 C -0.01 -0.09 9.36 -39.58 -0.37 -0.46 16 25 C -0.20 -1.70 5.87 -105.01 -0.62 -2.32 16 26 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.08 0.18 8.10 -51.92 -0.42 -0.24 16 28 H 0.08 0.18 6.62 -51.93 -0.34 -0.17 16 29 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.08 0.83 7.64 -51.93 -0.40 0.43 16 32 H 0.08 0.83 7.64 -51.93 -0.40 0.43 16 33 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.04 1.00 8.14 -51.92 -0.42 0.57 16 36 H 0.04 1.00 8.14 -51.92 -0.42 0.57 16 37 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.15 1.02 6.25 -52.48 -0.33 0.70 16 39 H 0.14 0.54 6.52 -52.48 -0.34 0.20 16 LS Contribution 351.39 15.07 5.30 5.30 Total: -1.00 -31.12 351.39 -9.24 -40.37 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -4.73 Total: -3.47 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -2.45 Total: -10.50 kcal Atomic # 7 Polarization: -25.20 SS G_CDS: 0.74 Total: -24.46 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.75 Total: -14.80 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: -5.75 SS G_CDS: -2.33 Total: -8.08 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.12 -9.24 -40.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840215308.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.975 kcal (2) G-P(sol) polarization free energy of solvation -31.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds