Wall clock time and date at job start Tue Mar 31 2020 12:52:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86803 * 119.99825 * 2 1
4 4 H 1.48495 * 109.46869 * 180.02562 * 3 2 1
5 5 H 1.48506 * 109.46896 * 300.00303 * 3 2 1
6 6 H 1.48500 * 109.47019 * 60.00299 * 3 2 1
7 7 C 1.37877 * 120.00093 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99957 * 179.97438 * 7 2 1
9 9 C 1.50697 * 120.00044 * 359.97438 * 7 2 1
10 10 H 1.09001 * 109.49938 * 59.93401 * 9 7 2
11 11 C 1.53045 * 109.49993 * 180.02562 * 9 7 2
12 12 C 1.53034 * 109.53907 * 181.31437 * 11 9 7
13 13 C 1.53193 * 109.31639 * 298.63357 * 12 11 9
14 14 N 1.46928 * 108.77244 * 54.63664 * 13 12 11
15 15 C 1.34773 * 120.63102 * 126.37291 * 14 13 12
16 16 O 1.21584 * 119.99898 * 185.22290 * 15 14 13
17 17 N 1.34771 * 120.00058 * 5.22315 * 15 14 13
18 18 C 1.46500 * 120.00258 * 175.01966 * 17 15 14
19 19 C 1.52996 * 109.47329 * 179.97438 * 18 17 15
20 20 H 1.09005 * 115.55003 * 29.41420 * 19 18 17
21 21 C 1.52998 * 117.50073 * 175.08903 * 19 18 17
22 22 C 1.52993 * 60.00236 * 107.51173 * 21 19 18
23 23 Cl 1.80297 * 117.49848 * 252.50950 * 22 21 19
24 24 Cl 1.80296 * 117.49935 * 107.49290 * 22 21 19
25 25 C 1.46929 * 118.73621 * 306.64200 * 14 13 12
26 26 H 0.97003 * 120.00353 * 359.97438 * 1 2 3
27 27 H 1.09004 * 109.45651 * 61.29251 * 11 9 7
28 28 H 1.09006 * 109.44369 * 301.33139 * 11 9 7
29 29 H 1.08998 * 109.49642 * 178.68024 * 12 11 9
30 30 H 1.09006 * 109.52366 * 58.60074 * 12 11 9
31 31 H 1.09002 * 109.58472 * 294.84793 * 13 12 11
32 32 H 1.09000 * 109.70355 * 174.48890 * 13 12 11
33 33 H 0.97006 * 120.00358 * 355.01726 * 17 15 14
34 34 H 1.09004 * 109.47230 * 59.99944 * 18 17 15
35 35 H 1.09003 * 109.46745 * 299.99925 * 18 17 15
36 36 H 1.09004 * 117.49877 * 215.00113 * 21 19 18
37 37 H 1.09006 * 117.50047 * 0.02562 * 21 19 18
38 38 H 1.09004 * 109.58127 * 173.14885 * 25 14 13
39 39 H 1.09005 * 109.58971 * 293.57041 * 25 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7091 1.3464 -0.0006
5 1 1.8902 2.3965 -1.2125
6 1 1.8904 2.3964 1.2125
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2511 -2.4991 -0.0005
10 1 0.6230 -2.5567 -0.8895
11 6 2.2451 -3.6629 -0.0005
12 6 1.4811 -4.9885 -0.0336
13 6 0.6059 -5.1003 1.2187
14 7 -0.2527 -3.9110 1.3032
15 6 -1.5891 -4.0361 1.4249
16 8 -2.2971 -3.0480 1.3983
17 7 -2.1407 -5.2565 1.5759
18 6 -3.5799 -5.3851 1.8173
19 6 -3.9446 -6.8650 1.9502
20 1 -3.1584 -7.5094 2.3437
21 6 -5.3892 -7.2061 2.3209
22 6 -4.8844 -7.4586 0.8989
23 17 -5.4777 -6.3607 -0.4023
24 17 -4.6069 -9.1705 0.4057
25 6 0.3727 -2.5827 1.2465
26 1 -0.4851 0.8400 0.0004
27 1 2.8563 -3.6183 0.9009
28 1 2.8872 -3.5916 -0.8785
29 1 2.1898 -5.8163 -0.0573
30 1 0.8509 -5.0236 -0.9223
31 1 1.2398 -5.1571 2.1036
32 1 -0.0140 -5.9947 1.1551
33 1 -1.5848 -6.0498 1.5248
34 1 -4.1288 -4.9496 0.9823
35 1 -3.8422 -4.8619 2.7369
36 1 -5.5535 -8.0750 2.9583
37 1 -6.0801 -6.3762 2.4697
38 1 -0.4009 -1.8163 1.1989
39 1 0.9872 -2.4299 2.1338
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000851969177.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:52:37
Heat of formation + Delta-G solvation = -14.848790 kcal
Electronic energy + Delta-G solvation = -22769.591114 eV
Core-core repulsion = 19185.900239 eV
Total energy + Delta-G solvation = -3583.690875 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 320.080 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-39.81092 -38.52097 -36.84387 -36.33054 -35.89306 -33.94241 -33.08828 -31.68186
-29.74840 -27.20952 -25.02957 -24.00609 -22.73275 -21.82516 -21.28909 -20.09415
-18.75879 -17.64853 -17.03855 -16.16007 -15.58843 -15.42788 -14.97429 -14.55882
-13.99127 -13.82338 -13.67022 -13.38828 -13.07693 -13.02526 -12.63310 -12.53232
-12.25833 -12.06628 -11.91264 -11.73181 -11.45322 -11.09580 -10.97762 -10.90183
-10.82558 -10.46693 -10.37637 -10.20733 -10.10454 -9.85108 -9.43751 -9.06803
-8.91348 -8.76819 -8.39089 -7.62572 -5.95079 -4.04390 0.86923 1.84690
2.73830 3.14338 3.32932 3.40864 3.43821 3.72266 3.85983 3.99822
4.42129 4.48714 4.52735 4.77728 5.08069 5.25065 5.29489 5.34621
5.50710 5.57806 5.64519 5.83598 5.98843 6.17953 6.33519 6.60673
6.68709 6.74802 6.82263 7.01438 7.05754 7.37809 7.51450 7.77389
7.96290 8.09837 8.44309 8.58553 8.99576 9.25562 9.61133 11.09721
Molecular weight = 320.08amu
Principal moments of inertia in cm(-1)
A = 0.021806 B = 0.003017 C = 0.002839
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1283.769949 B = 9279.151253 C = 9860.216238
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.878 5.878
2 C 0.062 3.938
3 Si 0.891 3.109
4 H -0.274 1.274
5 H -0.284 1.284
6 H -0.284 1.284
7 C -0.521 4.521
8 H 0.058 0.942
9 C 0.038 3.962
10 H 0.028 0.972
11 C -0.109 4.109
12 C -0.134 4.134
13 C 0.116 3.884
14 N -0.622 5.622
15 C 0.701 3.299
16 O -0.580 6.580
17 N -0.756 5.756
18 C 0.159 3.841
19 C -0.128 4.128
20 H 0.134 0.866
21 C -0.133 4.133
22 C -0.003 4.003
23 Cl -0.079 7.079
24 Cl -0.097 7.097
25 C 0.129 3.871
26 H 0.262 0.738
27 H 0.049 0.951
28 H 0.050 0.950
29 H 0.058 0.942
30 H 0.060 0.940
31 H 0.060 0.940
32 H 0.059 0.941
33 H 0.391 0.609
34 H 0.083 0.917
35 H 0.079 0.921
36 H 0.124 0.876
37 H 0.125 0.875
38 H 0.123 0.877
39 H 0.039 0.961
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.854 -19.149 5.284 21.749
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.515 5.515
2 C -0.141 4.141
3 Si 0.719 3.281
4 H -0.198 1.198
5 H -0.211 1.211
6 H -0.210 1.210
7 C -0.559 4.559
8 H 0.076 0.924
9 C 0.019 3.981
10 H 0.047 0.953
11 C -0.147 4.147
12 C -0.172 4.172
13 C -0.008 4.008
14 N -0.358 5.358
15 C 0.403 3.597
16 O -0.457 6.457
17 N -0.416 5.416
18 C 0.034 3.966
19 C -0.147 4.147
20 H 0.152 0.848
21 C -0.171 4.171
22 C -0.055 4.055
23 Cl -0.051 7.051
24 Cl -0.070 7.070
25 C 0.008 3.992
26 H 0.073 0.927
27 H 0.068 0.932
28 H 0.069 0.931
29 H 0.077 0.923
30 H 0.078 0.922
31 H 0.078 0.922
32 H 0.078 0.922
33 H 0.227 0.773
34 H 0.101 0.899
35 H 0.097 0.903
36 H 0.142 0.858
37 H 0.143 0.857
38 H 0.141 0.859
39 H 0.057 0.943
Dipole moment (debyes) X Y Z Total
from point charges -9.558 -18.295 5.132 21.270
hybrid contribution 0.731 0.245 -0.280 0.820
sum -8.827 -18.050 4.852 20.670
Atomic orbital electron populations
1.69911 1.05670 1.26653 1.49285 1.25063 0.94871 0.99220 0.94915
0.86556 0.80035 0.83920 0.77604 1.19828 1.21053 1.20992 1.21105
0.92890 0.90120 1.51819 0.92363 1.18917 0.92641 0.92207 0.94330
0.95342 1.21609 0.98529 0.94067 1.00495 1.21946 0.98613 0.99141
0.97514 1.21488 0.93351 0.87461 0.98530 1.47777 1.03464 1.08894
1.75688 1.15892 0.82655 0.82944 0.78253 1.90939 1.60373 1.36577
1.57806 1.45235 1.08195 1.07677 1.80492 1.20807 0.82102 0.90674
1.03035 1.23477 0.95373 0.98720 0.97170 0.84845 1.23985 0.96573
1.04912 0.91597 1.26893 1.09006 0.82874 0.86717 1.98775 1.88736
1.63422 1.54206 1.98752 1.96479 1.18714 1.93023 1.22100 0.98383
0.80533 0.98155 0.92737 0.93217 0.93088 0.92349 0.92167 0.92167
0.92227 0.77273 0.89945 0.90295 0.85777 0.85665 0.85865 0.94273
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -25.86 11.39 55.43 0.63 -25.23 16
2 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16
3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16
4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16
5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
7 C -0.52 -14.17 8.56 -34.44 -0.29 -14.47 16
8 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16
9 C 0.04 0.95 2.24 -91.87 -0.21 0.75 16
10 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16
11 C -0.11 -2.17 5.11 -26.69 -0.14 -2.31 16
12 C -0.13 -2.14 6.08 -26.61 -0.16 -2.31 16
13 C 0.12 1.76 6.39 -3.71 -0.02 1.74 16
14 N -0.62 -12.45 2.98 -178.76 -0.53 -12.98 16
15 C 0.70 14.16 8.29 -86.93 -0.72 13.44 16
16 O -0.58 -14.51 15.77 5.29 0.08 -14.43 16
17 N -0.76 -10.83 5.46 -65.23 -0.36 -11.19 16
18 C 0.16 1.91 5.88 -4.04 -0.02 1.89 16
19 C -0.13 -1.04 5.69 -90.62 -0.52 -1.55 16
20 H 0.13 0.88 8.04 -51.93 -0.42 0.46 16
21 C -0.13 -0.83 9.93 -26.74 -0.27 -1.10 16
22 C 0.00 -0.03 3.62 -26.73 -0.10 -0.13 16
23 Cl -0.08 -0.88 27.27 -51.86 -1.41 -2.30 16
24 Cl -0.10 -0.86 29.29 -51.86 -1.52 -2.38 16
25 C 0.13 3.14 5.39 -3.93 -0.02 3.12 16
26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16
28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16
29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
31 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16
32 H 0.06 0.71 5.64 -51.93 -0.29 0.41 16
33 H 0.39 4.50 5.89 -40.82 -0.24 4.26 16
34 H 0.08 1.16 6.06 -51.93 -0.31 0.85 16
35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16
36 H 0.12 0.54 8.14 -51.93 -0.42 0.11 16
37 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16
38 H 0.12 3.54 5.10 -51.93 -0.27 3.27 16
39 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16
LS Contribution 343.71 15.07 5.18 5.18
Total: -1.00 -32.49 343.71 -10.81 -43.29
By element:
Atomic # 1 Polarization: 8.29 SS G_CDS: -5.30 Total: 2.99 kcal
Atomic # 6 Polarization: 3.27 SS G_CDS: -2.56 Total: 0.71 kcal
Atomic # 7 Polarization: -49.15 SS G_CDS: -0.26 Total: -49.40 kcal
Atomic # 8 Polarization: -14.51 SS G_CDS: 0.08 Total: -14.43 kcal
Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal
Atomic # 17 Polarization: -1.75 SS G_CDS: -2.93 Total: -4.68 kcal
Total LS contribution 5.18 Total: 5.18 kcal
Total: -32.49 -10.81 -43.29 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000851969177.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.445 kcal
(2) G-P(sol) polarization free energy of solvation -32.485 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.041 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.808 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.293 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.849 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds