Wall clock time and date at job start Tue Mar 31 2020 12:52:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86803 * 119.99825 * 2 1
4 4 H 1.48495 * 109.46869 * 180.02562 * 3 2 1
5 5 H 1.48506 * 109.46896 * 300.00303 * 3 2 1
6 6 H 1.48500 * 109.47019 * 60.00299 * 3 2 1
7 7 C 1.37877 * 120.00093 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99957 * 179.97438 * 7 2 1
9 9 C 1.50697 * 120.00044 * 359.97438 * 7 2 1
10 10 H 1.09001 * 109.49938 * 59.93401 * 9 7 2
11 11 C 1.53045 * 109.49993 * 180.02562 * 9 7 2
12 12 C 1.53034 * 109.53907 * 181.31437 * 11 9 7
13 13 C 1.53193 * 109.31639 * 298.63357 * 12 11 9
14 14 N 1.46928 * 108.77244 * 54.63664 * 13 12 11
15 15 C 1.34773 * 120.63102 * 126.37291 * 14 13 12
16 16 O 1.21584 * 119.99898 * 185.22290 * 15 14 13
17 17 N 1.34771 * 120.00058 * 5.22315 * 15 14 13
18 18 C 1.46500 * 120.00258 * 175.01966 * 17 15 14
19 19 C 1.52996 * 109.47329 * 179.97438 * 18 17 15
20 20 H 1.09005 * 115.55003 * 29.41420 * 19 18 17
21 21 C 1.52998 * 117.50073 * 175.08903 * 19 18 17
22 22 C 1.52993 * 60.00236 * 107.51173 * 21 19 18
23 23 Cl 1.80297 * 117.49848 * 252.50950 * 22 21 19
24 24 Cl 1.80296 * 117.49935 * 107.49290 * 22 21 19
25 25 C 1.46929 * 118.73621 * 306.64200 * 14 13 12
26 26 H 0.97003 * 120.00353 * 359.97438 * 1 2 3
27 27 H 1.09004 * 109.45651 * 61.29251 * 11 9 7
28 28 H 1.09006 * 109.44369 * 301.33139 * 11 9 7
29 29 H 1.08998 * 109.49642 * 178.68024 * 12 11 9
30 30 H 1.09006 * 109.52366 * 58.60074 * 12 11 9
31 31 H 1.09002 * 109.58472 * 294.84793 * 13 12 11
32 32 H 1.09000 * 109.70355 * 174.48890 * 13 12 11
33 33 H 0.97006 * 120.00358 * 355.01726 * 17 15 14
34 34 H 1.09004 * 109.47230 * 59.99944 * 18 17 15
35 35 H 1.09003 * 109.46745 * 299.99925 * 18 17 15
36 36 H 1.09004 * 117.49877 * 215.00113 * 21 19 18
37 37 H 1.09006 * 117.50047 * 0.02562 * 21 19 18
38 38 H 1.09004 * 109.58127 * 173.14885 * 25 14 13
39 39 H 1.09005 * 109.58971 * 293.57041 * 25 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7091 1.3464 -0.0006
5 1 1.8902 2.3965 -1.2125
6 1 1.8904 2.3964 1.2125
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2511 -2.4991 -0.0005
10 1 0.6230 -2.5567 -0.8895
11 6 2.2451 -3.6629 -0.0005
12 6 1.4811 -4.9885 -0.0336
13 6 0.6059 -5.1003 1.2187
14 7 -0.2527 -3.9110 1.3032
15 6 -1.5891 -4.0361 1.4249
16 8 -2.2971 -3.0480 1.3983
17 7 -2.1407 -5.2565 1.5759
18 6 -3.5799 -5.3851 1.8173
19 6 -3.9446 -6.8650 1.9502
20 1 -3.1584 -7.5094 2.3437
21 6 -5.3892 -7.2061 2.3209
22 6 -4.8844 -7.4586 0.8989
23 17 -5.4777 -6.3607 -0.4023
24 17 -4.6069 -9.1705 0.4057
25 6 0.3727 -2.5827 1.2465
26 1 -0.4851 0.8400 0.0004
27 1 2.8563 -3.6183 0.9009
28 1 2.8872 -3.5916 -0.8785
29 1 2.1898 -5.8163 -0.0573
30 1 0.8509 -5.0236 -0.9223
31 1 1.2398 -5.1571 2.1036
32 1 -0.0140 -5.9947 1.1551
33 1 -1.5848 -6.0498 1.5248
34 1 -4.1288 -4.9496 0.9823
35 1 -3.8422 -4.8619 2.7369
36 1 -5.5535 -8.0750 2.9583
37 1 -6.0801 -6.3762 2.4697
38 1 -0.4009 -1.8163 1.1989
39 1 0.9872 -2.4299 2.1338
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000851969177.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:52:36
Heat of formation + Delta-G solvation = -35.191802 kcal
Electronic energy + Delta-G solvation = -22770.473254 eV
Core-core repulsion = 19185.900239 eV
Total energy + Delta-G solvation = -3584.573015 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 320.080 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-41.29608 -39.36637 -38.37264 -37.04965 -36.75044 -35.50204 -34.75358 -33.32341
-31.50594 -28.40677 -26.92004 -25.56607 -23.44495 -23.31765 -22.12263 -21.71039
-20.26919 -19.07724 -18.30580 -17.84689 -16.96687 -16.51543 -16.46449 -16.10631
-15.27203 -15.19038 -15.08031 -14.87018 -14.45119 -14.27239 -13.99275 -13.65627
-13.55372 -13.45326 -12.91783 -12.89934 -12.64953 -12.54318 -12.26236 -12.20757
-12.19420 -11.89912 -11.84365 -11.61415 -11.54565 -11.19258 -10.93509 -10.83351
-10.76681 -10.50512 -10.12930 -9.23118 -8.08004 -6.25783 0.18892 1.14230
1.40776 1.42223 1.54418 1.75547 2.16548 2.27696 2.43349 2.98105
3.09161 3.20855 3.47512 3.71941 4.06468 4.14932 4.18327 4.30350
4.58241 4.62553 4.63819 4.67777 4.75316 4.83376 4.87971 4.97480
5.12623 5.28145 5.29435 5.34251 5.52383 5.58804 5.67562 5.92059
6.00509 6.18611 6.38418 6.88040 7.15226 7.44304 7.70846 8.95061
Molecular weight = 320.08amu
Principal moments of inertia in cm(-1)
A = 0.021806 B = 0.003017 C = 0.002839
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1283.769949 B = 9279.151253 C = 9860.216238
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.914 5.914
2 C 0.008 3.992
3 Si 0.958 3.042
4 H -0.260 1.260
5 H -0.284 1.284
6 H -0.282 1.282
7 C -0.535 4.535
8 H 0.062 0.938
9 C 0.037 3.963
10 H -0.018 1.018
11 C -0.104 4.104
12 C -0.127 4.127
13 C 0.110 3.890
14 N -0.627 5.627
15 C 0.694 3.306
16 O -0.639 6.639
17 N -0.731 5.731
18 C 0.155 3.845
19 C -0.122 4.122
20 H 0.159 0.841
21 C -0.107 4.107
22 C -0.016 4.016
23 Cl -0.110 7.110
24 Cl -0.095 7.095
25 C 0.144 3.856
26 H 0.259 0.741
27 H 0.059 0.941
28 H 0.049 0.951
29 H 0.105 0.895
30 H 0.045 0.955
31 H 0.083 0.917
32 H 0.100 0.900
33 H 0.409 0.591
34 H 0.060 0.940
35 H 0.078 0.922
36 H 0.154 0.846
37 H 0.131 0.869
38 H 0.075 0.925
39 H 0.036 0.964
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.749 -21.982 6.624 24.231
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.553 5.553
2 C -0.191 4.191
3 Si 0.783 3.217
4 H -0.184 1.184
5 H -0.210 1.210
6 H -0.208 1.208
7 C -0.573 4.573
8 H 0.081 0.919
9 C 0.017 3.983
10 H 0.000 1.000
11 C -0.142 4.142
12 C -0.165 4.165
13 C -0.012 4.012
14 N -0.363 5.363
15 C 0.395 3.605
16 O -0.520 6.520
17 N -0.391 5.391
18 C 0.031 3.969
19 C -0.141 4.141
20 H 0.177 0.823
21 C -0.144 4.144
22 C -0.067 4.067
23 Cl -0.083 7.083
24 Cl -0.068 7.068
25 C 0.021 3.979
26 H 0.068 0.932
27 H 0.078 0.922
28 H 0.068 0.932
29 H 0.123 0.877
30 H 0.064 0.936
31 H 0.101 0.899
32 H 0.118 0.882
33 H 0.248 0.752
34 H 0.078 0.922
35 H 0.096 0.904
36 H 0.172 0.828
37 H 0.149 0.851
38 H 0.093 0.907
39 H 0.054 0.946
Dipole moment (debyes) X Y Z Total
from point charges -8.427 -21.221 6.474 23.733
hybrid contribution 0.377 1.068 -0.699 1.331
sum -8.050 -20.152 5.775 22.456
Atomic orbital electron populations
1.70121 1.07428 1.27092 1.50655 1.25916 0.95543 1.02965 0.94677
0.85509 0.79297 0.79480 0.77388 1.18360 1.21040 1.20768 1.21548
0.93273 0.91491 1.51007 0.91946 1.18851 0.93129 0.93841 0.92449
1.00016 1.21497 0.97609 0.94170 1.00903 1.21913 0.99020 0.98254
0.97328 1.21864 0.93580 0.86637 0.99086 1.47668 1.04108 1.08922
1.75601 1.16153 0.82464 0.83873 0.77991 1.90899 1.61757 1.39082
1.60261 1.44982 1.09347 1.06130 1.78677 1.20885 0.80239 0.93671
1.02094 1.23398 0.97281 0.96093 0.97350 0.82307 1.24201 0.94845
1.05877 0.89511 1.27108 1.10450 0.82458 0.86726 1.98775 1.89094
1.64557 1.55848 1.98753 1.96527 1.18416 1.93146 1.21469 0.96799
0.82060 0.97603 0.93234 0.92200 0.93217 0.87709 0.93585 0.89886
0.88152 0.75200 0.92159 0.90409 0.82812 0.85077 0.90693 0.94565
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -56.69 11.39 21.45 0.24 -56.45 16
2 C 0.01 0.47 5.30 84.65 0.45 0.92 16
3 Si 0.96 44.80 29.54 68.60 2.03 46.83 16
4 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16
5 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16
6 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16
7 C -0.53 -29.80 8.56 25.60 0.22 -29.58 16
8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16
9 C 0.04 1.88 2.24 -11.60 -0.03 1.85 16
10 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16
11 C -0.10 -4.02 5.11 30.62 0.16 -3.86 16
12 C -0.13 -3.70 6.08 30.67 0.19 -3.52 16
13 C 0.11 3.00 6.39 86.36 0.55 3.55 16
14 N -0.63 -25.04 2.98 -837.72 -2.49 -27.54 16
15 C 0.69 28.36 8.29 179.06 1.49 29.85 16
16 O -0.64 -33.64 15.77 -3.98 -0.06 -33.70 16
17 N -0.73 -19.92 5.46 -478.55 -2.62 -22.53 16
18 C 0.16 3.59 5.88 86.38 0.51 4.10 16
19 C -0.12 -1.64 5.69 -10.80 -0.06 -1.70 16
20 H 0.16 1.37 8.04 -2.38 -0.02 1.35 16
21 C -0.11 -1.00 9.93 30.59 0.30 -0.69 16
22 C -0.02 -0.25 3.62 30.59 0.11 -0.14 16
23 Cl -0.11 -2.45 27.27 -2.72 -0.07 -2.52 16
24 Cl -0.10 -1.48 29.29 -2.72 -0.08 -1.56 16
25 C 0.14 7.25 5.39 86.22 0.46 7.72 16
26 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16
27 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16
28 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16
29 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16
30 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16
31 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16
32 H 0.10 1.91 5.64 -2.39 -0.01 1.89 16
33 H 0.41 8.03 5.89 -92.70 -0.55 7.48 16
34 H 0.06 1.72 6.06 -2.38 -0.01 1.71 16
35 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16
36 H 0.15 0.62 8.14 -2.39 -0.02 0.60 16
37 H 0.13 1.15 8.14 -2.38 -0.02 1.13 16
38 H 0.07 4.58 5.10 -2.39 -0.01 4.57 16
39 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16
Total: -1.00 -77.52 343.71 1.82 -75.70
By element:
Atomic # 1 Polarization: 12.74 SS G_CDS: 0.53 Total: 13.26 kcal
Atomic # 6 Polarization: 4.16 SS G_CDS: 4.35 Total: 8.51 kcal
Atomic # 7 Polarization: -101.65 SS G_CDS: -4.87 Total: -106.52 kcal
Atomic # 8 Polarization: -33.64 SS G_CDS: -0.06 Total: -33.70 kcal
Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal
Atomic # 17 Polarization: -3.93 SS G_CDS: -0.15 Total: -4.08 kcal
Total: -77.52 1.82 -75.70 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000851969177.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.506 kcal
(2) G-P(sol) polarization free energy of solvation -77.517 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.012 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.820 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.698 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.192 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds