Wall clock time and date at job start Tue Mar 31 2020 13:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39231 * 119.53975 * 2 1 4 4 C 1.36142 * 121.06502 * 179.72313 * 3 2 1 5 5 C 1.40566 * 119.76533 * 0.28008 * 4 3 2 6 6 C 1.40542 * 121.26758 * 179.97438 * 5 4 3 7 7 C 1.36104 * 119.65068 * 180.02562 * 6 5 4 8 8 C 1.39357 * 120.97405 * 359.95433 * 7 6 5 9 9 C 1.36140 * 120.97059 * 0.02562 * 8 7 6 10 10 C 1.40407 * 119.66460 * 0.02562 * 9 8 7 11 11 C 1.36634 * 119.54233 * 180.26811 * 2 1 3 12 12 O 1.35803 * 120.23006 * 359.97438 * 11 2 1 13 13 S 1.52200 * 114.00292 * 85.15436 * 12 11 2 14 14 O 1.42098 * 104.27985 * 191.62417 * 13 12 11 15 15 O 1.42098 * 104.27365 * 319.48194 * 13 12 11 16 16 C 1.81397 * 104.44884 * 75.55020 * 13 12 11 17 17 C 1.52996 * 109.47053 * 182.32757 * 16 13 12 18 18 C 1.50706 * 109.47012 * 180.02562 * 17 16 13 19 19 H 1.08001 * 120.00117 * 0.02562 * 18 17 16 20 20 C 1.37871 * 119.99906 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00182 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99860 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47131 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46719 * 120.00357 * 22 20 18 25 25 H 1.48502 * 109.47167 * 239.99844 * 22 20 18 26 26 H 1.09003 * 109.47071 * 84.04851 * 1 2 3 27 27 H 1.09003 * 109.46862 * 204.03937 * 1 2 3 28 28 H 1.08995 * 109.47417 * 324.04184 * 1 2 3 29 29 H 1.08003 * 119.46669 * 359.97438 * 3 2 1 30 30 H 1.07997 * 120.11598 * 180.25995 * 4 3 2 31 31 H 1.08004 * 120.17786 * 0.03759 * 6 5 4 32 32 H 1.07998 * 119.51563 * 179.97438 * 7 6 5 33 33 H 1.07994 * 119.51686 * 180.02562 * 8 7 6 34 34 H 1.07998 * 120.16867 * 180.02562 * 9 8 7 35 35 H 1.09005 * 109.47331 * 302.33154 * 16 13 12 36 36 H 1.09007 * 109.46946 * 62.32803 * 16 13 12 37 37 H 1.08996 * 109.47427 * 299.99738 * 17 16 13 38 38 H 1.09001 * 109.47213 * 60.00920 * 17 16 13 39 39 H 0.97008 * 120.00103 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1934 1.2113 0.0000 4 6 3.5544 1.2476 0.0056 5 6 4.2844 0.0464 0.0056 6 6 5.6899 0.0470 0.0108 7 6 6.3637 -1.1356 0.0101 8 6 5.6806 -2.3503 0.0052 9 6 4.3197 -2.3887 0.0005 10 6 3.5906 -1.1888 0.0000 11 6 2.1807 -1.1887 -0.0056 12 8 1.4970 -2.3621 -0.0105 13 16 1.0833 -2.8317 -1.3979 14 8 0.1691 -3.8912 -1.1511 15 8 0.6680 -1.6450 -2.0601 16 6 2.6132 -3.4697 -2.1347 17 6 2.3374 -3.9245 -3.5692 18 6 3.6083 -4.4551 -4.1811 19 1 4.5213 -4.4671 -3.6044 20 6 3.6054 -4.9251 -5.4772 21 7 2.4938 -4.9100 -6.1798 22 14 5.1810 -5.5822 -6.2360 23 1 6.2834 -5.4900 -5.2453 24 1 4.9867 -7.0010 -6.6292 25 1 5.5249 -4.7785 -7.4364 26 1 -0.3633 0.1066 -1.0222 27 1 -0.3633 -0.9386 0.4187 28 1 -0.3634 0.8318 0.6034 29 1 1.6373 2.1372 -0.0004 30 1 4.0712 2.1959 0.0098 31 1 6.2324 0.9808 0.0155 32 1 7.4436 -1.1326 0.0136 33 1 6.2389 -3.2747 0.0051 34 1 3.8036 -3.3374 -0.0028 35 1 3.3685 -2.6837 -2.1415 36 1 2.9738 -4.3150 -1.5485 37 1 1.5822 -4.7104 -3.5624 38 1 1.9769 -3.0792 -4.1554 39 1 2.4917 -5.2411 -7.0916 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882836653.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:47 Heat of formation + Delta-G solvation = -68.914348 kcal Electronic energy + Delta-G solvation = -25292.420689 eV Core-core repulsion = 21678.569160 eV Total energy + Delta-G solvation = -3613.851529 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.091 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.50280 -39.19272 -36.90652 -36.55917 -35.64110 -33.98343 -32.56057 -31.89459 -31.05401 -29.45904 -26.99788 -25.70719 -23.72041 -22.72890 -22.27881 -21.82551 -19.95713 -18.35096 -17.83186 -17.48151 -16.71358 -16.50775 -16.00123 -15.68050 -14.96147 -14.65869 -14.56023 -14.12469 -13.89067 -13.84838 -13.44117 -13.19724 -13.02011 -12.66889 -12.50992 -12.40430 -12.21382 -11.93233 -11.80133 -11.68493 -11.55105 -11.22124 -11.11276 -11.03606 -10.99413 -10.92180 -10.45461 -10.40440 -9.90075 -9.73452 -9.16370 -8.67055 -8.51328 -7.96395 -6.13160 -4.18308 0.10327 0.79403 0.83830 1.82755 2.49884 2.81197 3.24468 3.31668 3.34954 3.87528 4.05949 4.34247 4.36308 4.42844 4.54432 4.66504 4.81695 4.87033 4.96840 5.12807 5.17267 5.22417 5.30040 5.45684 5.55596 5.63999 5.67400 5.70799 5.76821 5.90635 5.99898 6.12749 6.18576 6.26679 6.37505 6.41084 6.44625 6.67153 6.82132 7.27667 7.33885 7.80129 8.16517 8.84851 9.46304 10.98040 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.012569 B = 0.005374 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.105713 B = 5209.086104 C = 6615.598051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.038 4.038 3 C -0.109 4.109 4 C -0.085 4.085 5 C -0.048 4.048 6 C -0.101 4.101 7 C -0.113 4.113 8 C -0.099 4.099 9 C -0.114 4.114 10 C -0.050 4.050 11 C 0.069 3.931 12 O -0.667 6.667 13 S 2.566 3.434 14 O -0.939 6.939 15 O -0.956 6.956 16 C -0.613 4.613 17 C 0.032 3.968 18 C -0.517 4.517 19 H 0.062 0.938 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.899 3.101 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.103 0.897 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.033 0.967 38 H 0.035 0.965 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.429 12.720 14.989 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.041 4.041 3 C -0.127 4.127 4 C -0.104 4.104 5 C -0.049 4.049 6 C -0.119 4.119 7 C -0.131 4.131 8 C -0.117 4.117 9 C -0.132 4.132 10 C -0.051 4.051 11 C 0.027 3.973 12 O -0.625 6.625 13 S 2.667 3.333 14 O -0.937 6.937 15 O -0.954 6.954 16 C -0.744 4.744 17 C -0.006 4.006 18 C -0.556 4.556 19 H 0.080 0.920 20 C -0.145 4.145 21 N -0.529 5.529 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.122 0.878 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.155 0.845 30 H 0.155 0.845 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.563 12.713 15.106 20.063 hybrid contribution 1.337 -0.895 -0.756 1.777 sum 4.900 11.818 14.350 19.225 Atomic orbital electron populations 1.21081 0.90003 1.03036 1.04671 1.19803 0.97495 0.91590 0.95199 1.20619 0.94286 0.96890 1.00884 1.21167 0.94091 0.97313 0.97798 1.17874 0.93807 0.91807 1.01370 1.20996 0.92255 0.98791 0.99878 1.20926 1.00352 0.92348 0.99438 1.20925 0.94102 0.98578 0.98125 1.21135 0.94968 0.97233 0.99822 1.17997 0.90874 0.94534 1.01717 1.17380 0.88751 0.81340 1.09790 1.85675 1.74998 1.43346 1.58457 1.06430 0.78503 0.75204 0.73188 1.93583 1.60466 1.57306 1.82318 1.93574 1.81343 1.45861 1.74644 1.30874 1.18913 1.11773 1.12837 1.18945 0.99492 0.97619 0.84587 1.21018 0.94669 1.41900 0.98049 0.91954 1.25058 0.96610 0.95676 0.97110 1.69964 1.26402 1.46229 1.10283 0.86428 0.83056 0.78671 0.79226 1.19629 1.20784 1.20793 0.87839 0.91630 0.90643 0.84523 0.84541 0.85020 0.85541 0.85205 0.84967 0.85731 0.85800 0.94853 0.94634 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 8.56 36.01 0.31 -1.42 16 2 C -0.04 -0.54 5.20 -104.83 -0.54 -1.08 16 3 C -0.11 -1.21 9.60 -39.97 -0.38 -1.59 16 4 C -0.09 -0.89 9.77 -39.46 -0.39 -1.27 16 5 C -0.05 -0.61 5.74 -106.84 -0.61 -1.22 16 6 C -0.10 -1.05 9.77 -39.48 -0.39 -1.44 16 7 C -0.11 -1.18 9.95 -39.93 -0.40 -1.58 16 8 C -0.10 -1.20 9.95 -39.92 -0.40 -1.60 16 9 C -0.11 -1.62 7.24 -39.52 -0.29 -1.90 16 10 C -0.05 -0.74 5.19 -106.73 -0.55 -1.30 16 11 C 0.07 1.11 4.83 -39.12 -0.19 0.93 16 12 O -0.67 -11.53 8.25 -51.45 -0.42 -11.95 16 13 S 2.57 50.69 5.07 -107.50 -0.55 50.15 16 14 O -0.94 -21.06 18.09 -67.04 -1.21 -22.27 16 15 O -0.96 -19.71 13.98 -67.04 -0.94 -20.64 16 16 C -0.61 -12.48 4.17 37.16 0.15 -12.33 16 17 C 0.03 0.83 4.98 -27.88 -0.14 0.69 16 18 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 19 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 22 Si 0.90 21.21 29.54 -169.99 -5.02 16.18 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H 0.10 1.46 7.04 -51.93 -0.37 1.10 16 27 H 0.06 0.90 7.29 -51.93 -0.38 0.53 16 28 H 0.07 0.72 8.12 -51.93 -0.42 0.29 16 29 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 30 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.13 0.95 8.06 -52.48 -0.42 0.52 16 32 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 34 H 0.13 1.83 5.79 -52.49 -0.30 1.52 16 35 H 0.12 2.38 6.01 -51.92 -0.31 2.07 16 36 H 0.12 2.25 7.30 -51.92 -0.38 1.87 16 37 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 333.24 15.07 5.02 5.02 Total: -1.00 -34.59 333.24 -11.27 -45.86 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -4.66 Total: 1.62 kcal Atomic # 6 Polarization: -33.97 SS G_CDS: -4.22 Total: -38.20 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.74 Total: -25.77 kcal Atomic # 8 Polarization: -52.29 SS G_CDS: -2.57 Total: -54.87 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 50.69 SS G_CDS: -0.55 Total: 50.15 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.59 -11.27 -45.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882836653.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.059 kcal (2) G-P(sol) polarization free energy of solvation -34.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds