Wall clock time and date at job start Tue Mar 31 2020 13:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39231 * 119.53975 * 2 1 4 4 C 1.36142 * 121.06502 * 179.72313 * 3 2 1 5 5 C 1.40566 * 119.76533 * 0.28008 * 4 3 2 6 6 C 1.40542 * 121.26758 * 179.97438 * 5 4 3 7 7 C 1.36104 * 119.65068 * 180.02562 * 6 5 4 8 8 C 1.39357 * 120.97405 * 359.95433 * 7 6 5 9 9 C 1.36140 * 120.97059 * 0.02562 * 8 7 6 10 10 C 1.40407 * 119.66460 * 0.02562 * 9 8 7 11 11 C 1.36634 * 119.54233 * 180.26811 * 2 1 3 12 12 O 1.35803 * 120.23006 * 359.97438 * 11 2 1 13 13 S 1.52200 * 114.00292 * 85.15436 * 12 11 2 14 14 O 1.42098 * 104.27985 * 191.62417 * 13 12 11 15 15 O 1.42098 * 104.27365 * 319.48194 * 13 12 11 16 16 C 1.81397 * 104.44884 * 75.55020 * 13 12 11 17 17 C 1.52996 * 109.47053 * 182.32757 * 16 13 12 18 18 C 1.50706 * 109.47012 * 180.02562 * 17 16 13 19 19 H 1.08001 * 120.00117 * 0.02562 * 18 17 16 20 20 C 1.37871 * 119.99906 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00182 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99860 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47131 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46719 * 120.00357 * 22 20 18 25 25 H 1.48502 * 109.47167 * 239.99844 * 22 20 18 26 26 H 1.09003 * 109.47071 * 84.04851 * 1 2 3 27 27 H 1.09003 * 109.46862 * 204.03937 * 1 2 3 28 28 H 1.08995 * 109.47417 * 324.04184 * 1 2 3 29 29 H 1.08003 * 119.46669 * 359.97438 * 3 2 1 30 30 H 1.07997 * 120.11598 * 180.25995 * 4 3 2 31 31 H 1.08004 * 120.17786 * 0.03759 * 6 5 4 32 32 H 1.07998 * 119.51563 * 179.97438 * 7 6 5 33 33 H 1.07994 * 119.51686 * 180.02562 * 8 7 6 34 34 H 1.07998 * 120.16867 * 180.02562 * 9 8 7 35 35 H 1.09005 * 109.47331 * 302.33154 * 16 13 12 36 36 H 1.09007 * 109.46946 * 62.32803 * 16 13 12 37 37 H 1.08996 * 109.47427 * 299.99738 * 17 16 13 38 38 H 1.09001 * 109.47213 * 60.00920 * 17 16 13 39 39 H 0.97008 * 120.00103 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1934 1.2113 0.0000 4 6 3.5544 1.2476 0.0056 5 6 4.2844 0.0464 0.0056 6 6 5.6899 0.0470 0.0108 7 6 6.3637 -1.1356 0.0101 8 6 5.6806 -2.3503 0.0052 9 6 4.3197 -2.3887 0.0005 10 6 3.5906 -1.1888 0.0000 11 6 2.1807 -1.1887 -0.0056 12 8 1.4970 -2.3621 -0.0105 13 16 1.0833 -2.8317 -1.3979 14 8 0.1691 -3.8912 -1.1511 15 8 0.6680 -1.6450 -2.0601 16 6 2.6132 -3.4697 -2.1347 17 6 2.3374 -3.9245 -3.5692 18 6 3.6083 -4.4551 -4.1811 19 1 4.5213 -4.4671 -3.6044 20 6 3.6054 -4.9251 -5.4772 21 7 2.4938 -4.9100 -6.1798 22 14 5.1810 -5.5822 -6.2360 23 1 6.2834 -5.4900 -5.2453 24 1 4.9867 -7.0010 -6.6292 25 1 5.5249 -4.7785 -7.4364 26 1 -0.3633 0.1066 -1.0222 27 1 -0.3633 -0.9386 0.4187 28 1 -0.3634 0.8318 0.6034 29 1 1.6373 2.1372 -0.0004 30 1 4.0712 2.1959 0.0098 31 1 6.2324 0.9808 0.0155 32 1 7.4436 -1.1326 0.0136 33 1 6.2389 -3.2747 0.0051 34 1 3.8036 -3.3374 -0.0028 35 1 3.3685 -2.6837 -2.1415 36 1 2.9738 -4.3150 -1.5485 37 1 1.5822 -4.7104 -3.5624 38 1 1.9769 -3.0792 -4.1554 39 1 2.4917 -5.2411 -7.0916 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882836653.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:46 Heat of formation + Delta-G solvation = -90.479070 kcal Electronic energy + Delta-G solvation = -25293.355806 eV Core-core repulsion = 21678.569160 eV Total energy + Delta-G solvation = -3614.786646 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.091 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.61314 -40.26054 -38.42710 -37.64313 -37.28367 -35.99542 -33.61821 -33.27710 -32.52748 -30.36409 -28.00124 -27.70550 -24.77516 -23.78156 -23.68315 -23.19850 -21.22195 -19.80275 -19.03064 -18.88268 -18.47453 -17.68446 -17.30948 -16.82313 -16.59400 -16.32590 -15.67780 -15.32002 -15.12234 -14.83551 -14.80800 -14.51113 -14.24234 -14.03293 -13.86507 -13.74455 -13.57083 -13.42776 -13.27223 -13.12868 -13.00098 -12.88867 -12.73927 -12.37626 -12.17839 -12.01988 -11.97186 -11.89287 -11.74384 -11.22289 -10.80836 -10.67429 -9.58585 -8.91854 -8.28065 -6.42177 -1.14787 -0.42976 -0.08255 0.83458 1.13361 1.39289 1.40350 1.53677 1.92550 2.35287 2.49556 2.84241 3.00297 3.05414 3.45100 3.61646 3.69080 3.77996 3.89184 3.96191 4.05231 4.09577 4.25742 4.36666 4.42902 4.61233 4.63250 4.68579 4.78278 4.84292 4.99054 5.09670 5.17231 5.18083 5.21501 5.22773 5.32267 5.50842 5.53255 5.65135 5.76451 5.97034 6.02414 6.70023 7.27772 8.84716 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.012569 B = 0.005374 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.105713 B = 5209.086104 C = 6615.598051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.040 4.040 3 C -0.123 4.123 4 C -0.060 4.060 5 C -0.071 4.071 6 C -0.088 4.088 7 C -0.122 4.122 8 C -0.097 4.097 9 C -0.154 4.154 10 C -0.067 4.067 11 C 0.014 3.986 12 O -0.656 6.656 13 S 2.586 3.414 14 O -0.976 6.976 15 O -0.969 6.969 16 C -0.606 4.606 17 C 0.028 3.972 18 C -0.536 4.536 19 H 0.075 0.925 20 C -0.002 4.002 21 N -0.934 5.934 22 Si 0.974 3.026 23 H -0.255 1.255 24 H -0.278 1.278 25 H -0.276 1.276 26 H 0.090 0.910 27 H 0.048 0.952 28 H 0.115 0.885 29 H 0.174 0.826 30 H 0.184 0.816 31 H 0.173 0.827 32 H 0.159 0.841 33 H 0.144 0.856 34 H 0.120 0.880 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.007 0.993 38 H 0.011 0.989 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.689 15.338 15.897 23.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.044 4.044 3 C -0.140 4.140 4 C -0.079 4.079 5 C -0.071 4.071 6 C -0.106 4.106 7 C -0.139 4.139 8 C -0.115 4.115 9 C -0.172 4.172 10 C -0.068 4.068 11 C -0.028 4.028 12 O -0.615 6.615 13 S 2.687 3.313 14 O -0.974 6.974 15 O -0.968 6.968 16 C -0.736 4.736 17 C -0.010 4.010 18 C -0.574 4.574 19 H 0.093 0.907 20 C -0.201 4.201 21 N -0.573 5.573 22 Si 0.798 3.202 23 H -0.178 1.178 24 H -0.203 1.203 25 H -0.202 1.202 26 H 0.108 0.892 27 H 0.067 0.933 28 H 0.133 0.867 29 H 0.191 0.809 30 H 0.201 0.799 31 H 0.191 0.809 32 H 0.177 0.823 33 H 0.162 0.838 34 H 0.138 0.862 35 H 0.156 0.844 36 H 0.159 0.841 37 H 0.025 0.975 38 H 0.029 0.971 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.819 15.308 16.012 23.178 hybrid contribution 0.388 -1.536 -0.923 1.834 sum 7.207 13.772 15.089 21.663 Atomic orbital electron populations 1.21173 0.89976 1.03852 1.04422 1.20237 0.98011 0.92330 0.93800 1.21053 0.95098 0.96842 1.01038 1.21748 0.93881 0.98349 0.93894 1.18334 0.95194 0.91657 1.01961 1.21498 0.91318 1.00504 0.97250 1.21331 1.02037 0.91651 0.98922 1.21268 0.93439 1.00340 0.96440 1.21205 0.96145 0.96954 1.02898 1.18241 0.90456 0.95945 1.02189 1.17908 0.89745 0.81070 1.14115 1.85647 1.75327 1.44637 1.55895 1.05820 0.77706 0.74366 0.73374 1.93521 1.61823 1.58770 1.83275 1.93530 1.81502 1.46091 1.75660 1.30738 1.20264 1.12925 1.09665 1.18787 0.98562 0.95948 0.87743 1.21465 0.95512 1.41801 0.98662 0.90721 1.26108 1.00413 0.95819 0.97714 1.70109 1.29051 1.47356 1.10826 0.85259 0.78661 0.77866 0.78452 1.17841 1.20324 1.20158 0.89194 0.93333 0.86683 0.80860 0.79873 0.80915 0.82323 0.83838 0.86195 0.84394 0.84118 0.97481 0.97064 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 8.56 71.24 0.61 -2.99 16 2 C -0.04 -1.12 5.20 -20.00 -0.10 -1.22 16 3 C -0.12 -2.35 9.60 22.02 0.21 -2.14 16 4 C -0.06 -1.00 9.77 22.35 0.22 -0.78 16 5 C -0.07 -1.58 5.74 -21.30 -0.12 -1.70 16 6 C -0.09 -1.44 9.77 22.34 0.22 -1.23 16 7 C -0.12 -2.12 9.95 22.04 0.22 -1.90 16 8 C -0.10 -2.20 9.95 22.05 0.22 -1.98 16 9 C -0.15 -4.40 7.24 22.31 0.16 -4.24 16 10 C -0.07 -1.96 5.19 -21.23 -0.11 -2.07 16 11 C 0.01 0.44 4.83 22.57 0.11 0.55 16 12 O -0.66 -23.99 8.25 -60.43 -0.50 -24.48 16 13 S 2.59 108.53 5.07 -56.49 -0.29 108.24 16 14 O -0.98 -46.77 18.09 -118.57 -2.15 -48.92 16 15 O -0.97 -42.16 13.98 -118.57 -1.66 -43.82 16 16 C -0.61 -25.90 4.17 71.98 0.30 -25.60 16 17 C 0.03 1.54 4.98 29.85 0.15 1.68 16 18 C -0.54 -30.27 9.11 25.60 0.23 -30.04 16 19 H 0.07 3.92 7.74 -2.91 -0.02 3.90 16 20 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 21 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 22 Si 0.97 43.47 29.54 68.60 2.03 45.49 16 23 H -0.25 -10.57 7.11 99.48 0.71 -9.86 16 24 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 26 H 0.09 2.60 7.04 -2.39 -0.02 2.59 16 27 H 0.05 1.40 7.29 -2.39 -0.02 1.38 16 28 H 0.11 1.98 8.12 -2.39 -0.02 1.96 16 29 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 30 H 0.18 1.27 8.06 -2.91 -0.02 1.25 16 31 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 32 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 33 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 34 H 0.12 3.52 5.79 -2.91 -0.02 3.50 16 35 H 0.14 5.48 6.01 -2.39 -0.01 5.46 16 36 H 0.14 5.39 7.30 -2.39 -0.02 5.37 16 37 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 Total: -1.00 -79.36 333.24 1.57 -77.80 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 1.07 Total: 15.98 kcal Atomic # 6 Polarization: -76.10 SS G_CDS: 2.77 Total: -73.32 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: 0.28 Total: -56.97 kcal Atomic # 8 Polarization: -112.92 SS G_CDS: -4.30 Total: -117.22 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 108.53 SS G_CDS: -0.29 Total: 108.24 kcal Total: -79.36 1.57 -77.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882836653.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.682 kcal (2) G-P(sol) polarization free energy of solvation -79.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds