Wall clock time and date at job start Tue Mar 31 2020 12:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00273 * 2 1 4 4 H 1.48490 * 109.47520 * 240.00288 * 3 2 1 5 5 H 1.48505 * 109.47088 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47033 * 119.99923 * 3 2 1 7 7 C 1.37878 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99695 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00156 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46919 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99854 * 179.97438 * 10 9 7 12 12 O 1.21363 * 119.99810 * 0.02562 * 11 10 9 13 13 C 1.49342 * 120.00099 * 180.02562 * 11 10 9 14 14 O 1.21383 * 119.99611 * 0.02562 * 13 11 10 15 15 N 1.34777 * 120.00103 * 180.02562 * 13 11 10 16 16 C 1.39930 * 119.99993 * 180.27738 * 15 13 11 17 17 C 1.40462 * 125.97765 * 359.44305 * 16 15 13 18 18 C 1.35223 * 107.86169 * 179.82834 * 17 16 15 19 19 N 1.34978 * 107.87877 * 0.42611 * 18 17 16 20 20 C 1.46499 * 125.97176 * 179.71014 * 19 18 17 21 21 C 1.53002 * 109.47136 * 124.99791 * 20 19 18 22 22 F 1.39904 * 109.46958 * 59.99992 * 21 20 19 23 23 F 1.39901 * 109.46855 * 179.97438 * 21 20 19 24 24 F 1.39892 * 109.47161 * 300.00123 * 21 20 19 25 25 N 1.31275 * 125.98051 * 179.74611 * 16 15 13 26 26 H 0.97003 * 120.00172 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46740 * 60.01058 * 9 7 2 28 28 H 1.08997 * 109.47481 * 300.00306 * 9 7 2 29 29 H 0.97000 * 119.99819 * 0.02562 * 10 9 7 30 30 H 0.97001 * 119.99727 * 359.97438 * 15 13 11 31 31 H 1.07998 * 126.07008 * 359.96982 * 17 16 15 32 32 H 1.08003 * 126.05830 * 180.13450 * 18 17 16 33 33 H 1.09003 * 109.46954 * 244.99527 * 20 19 18 34 34 H 1.08999 * 109.47140 * 4.99591 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5605 -5.1051 0.0000 13 6 2.7241 -6.0185 0.0006 14 8 3.9175 -5.7967 0.0010 15 7 2.2749 -7.2892 0.0006 16 6 3.1841 -8.3528 0.0070 17 6 4.5843 -8.2414 0.0027 18 6 5.0999 -9.4915 0.0154 19 7 4.0703 -10.3643 0.0178 20 6 4.1807 -11.8251 0.0243 21 6 3.3924 -12.3909 1.2073 22 9 2.0471 -12.0253 1.0889 23 9 3.4973 -13.7859 1.2132 24 9 3.9114 -11.8786 2.4012 25 7 2.8779 -9.6293 0.0124 26 1 -0.4850 0.8401 -0.0004 27 1 0.6241 -2.5567 -0.8904 28 1 0.6246 -2.5571 0.8896 29 1 3.1566 -3.4354 -0.0002 30 1 1.3212 -7.4664 0.0006 31 1 5.1489 -7.3208 -0.0065 32 1 6.1494 -9.7463 0.0180 33 1 3.7762 -12.2242 -0.9059 34 1 5.2287 -12.1099 0.1166 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116847570.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:52 Heat of formation + Delta-G solvation = -130.697244 kcal Electronic energy + Delta-G solvation = -25733.113152 eV Core-core repulsion = 21060.725312 eV Total energy + Delta-G solvation = -4672.387840 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.088 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.52007 -48.09507 -47.92684 -41.72393 -40.20005 -38.12075 -35.65527 -34.43796 -33.38120 -32.39579 -30.45732 -28.73460 -27.74043 -25.21069 -23.81898 -22.61206 -21.85265 -20.80759 -19.86323 -19.06826 -18.91673 -18.47999 -18.25016 -17.33846 -16.55439 -16.27191 -15.87795 -15.52901 -15.09970 -15.05830 -14.88116 -14.83270 -14.42368 -14.32479 -14.15165 -14.08485 -14.04658 -13.81898 -13.37203 -13.21276 -13.15184 -12.56818 -12.07415 -11.95708 -11.34104 -11.18620 -11.06595 -10.92798 -10.91612 -10.34502 -9.52086 -9.22106 -9.17427 -8.85248 -8.62228 -8.14888 -6.23388 -4.31099 1.17268 1.51846 1.70076 2.21538 2.59224 2.70555 3.19541 3.24255 3.28982 3.30840 3.39032 3.61933 3.69315 3.94811 4.17602 4.29530 4.36866 4.45331 4.92462 5.01304 5.13330 5.31358 5.46560 5.89174 6.39882 6.60924 6.70896 7.03954 7.05909 7.33879 7.44271 7.55869 7.76042 7.84751 8.32311 8.51321 8.79521 9.35180 10.86573 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.038961 B = 0.002141 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.491946 B =13076.959812 C =13475.526550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.548 4.548 8 H 0.066 0.934 9 C 0.246 3.754 10 N -0.668 5.668 11 C 0.496 3.504 12 O -0.531 6.531 13 C 0.521 3.479 14 O -0.497 6.497 15 N -0.614 5.614 16 C 0.314 3.686 17 C -0.254 4.254 18 C 0.071 3.929 19 N -0.386 5.386 20 C 0.105 3.895 21 C 0.443 3.557 22 F -0.163 7.163 23 F -0.179 7.179 24 F -0.178 7.178 25 N -0.308 5.308 26 H 0.268 0.732 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.405 0.595 30 H 0.429 0.571 31 H 0.180 0.820 32 H 0.184 0.816 33 H 0.129 0.871 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.621 -25.582 -0.317 28.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.085 0.915 9 C 0.127 3.873 10 N -0.317 5.317 11 C 0.274 3.726 12 O -0.410 6.410 13 C 0.302 3.698 14 O -0.368 6.368 15 N -0.265 5.265 16 C 0.056 3.944 17 C -0.284 4.284 18 C -0.072 4.072 19 N -0.171 5.171 20 C -0.020 4.020 21 C 0.387 3.613 22 F -0.144 7.144 23 F -0.160 7.160 24 F -0.159 7.159 25 N -0.137 5.137 26 H 0.078 0.922 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.240 0.760 30 H 0.268 0.732 31 H 0.197 0.803 32 H 0.201 0.799 33 H 0.147 0.853 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.510 -26.286 -0.291 28.310 hybrid contribution 0.882 1.195 0.212 1.500 sum 11.391 -25.090 -0.079 27.555 Atomic orbital electron populations 1.69954 1.06116 1.27669 1.48440 1.24940 0.94958 0.99529 0.94448 0.86411 0.79377 0.81953 0.78839 1.19950 1.21046 1.19952 1.21154 0.93485 0.90053 1.53908 0.91544 1.19377 0.88107 0.81328 0.98522 1.46415 1.12812 1.04777 1.67699 1.19465 0.87871 0.84298 0.81009 1.90764 1.15595 1.84386 1.50228 1.20923 0.89414 0.83380 0.76047 1.90655 1.16345 1.84261 1.45548 1.42401 1.10550 1.02620 1.70922 1.19227 0.90128 0.87206 0.97788 1.22022 0.92201 0.99025 1.15114 1.22660 0.94535 0.88952 1.01057 1.47620 1.04247 1.04010 1.61239 1.22707 1.03882 0.77665 0.97751 1.20666 0.79899 0.75924 0.84800 1.93298 1.34109 1.91109 1.95885 1.93220 1.96050 1.30060 1.96716 1.93232 1.86492 1.86744 1.49461 1.77606 1.03487 1.01758 1.30822 0.92233 0.94579 0.94593 0.75988 0.73199 0.80276 0.79938 0.85298 0.84076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.27 13.29 55.43 0.74 -24.53 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.47 29.54 -169.99 -5.02 15.44 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.55 -14.45 9.28 -34.44 -0.32 -14.77 16 8 H 0.07 1.65 7.60 -52.49 -0.40 1.25 16 9 C 0.25 6.24 5.43 -5.19 -0.03 6.21 16 10 N -0.67 -13.87 5.54 -61.94 -0.34 -14.21 16 11 C 0.50 9.61 7.89 -11.64 -0.09 9.52 16 12 O -0.53 -11.53 16.48 5.49 0.09 -11.44 16 13 C 0.52 8.53 7.85 -11.64 -0.09 8.44 16 14 O -0.50 -8.31 13.60 5.47 0.07 -8.24 16 15 N -0.61 -8.92 5.43 -11.58 -0.06 -8.98 16 16 C 0.31 4.34 8.10 -154.55 -1.25 3.09 16 17 C -0.25 -3.07 9.60 -39.82 -0.38 -3.45 16 18 C 0.07 0.59 11.43 -17.24 -0.20 0.39 16 19 N -0.39 -3.54 3.60 -61.38 -0.22 -3.76 16 20 C 0.10 0.52 6.50 -4.04 -0.03 0.49 16 21 C 0.44 3.43 3.28 37.16 0.12 3.55 16 22 F -0.16 -1.76 16.28 2.25 0.04 -1.72 16 23 F -0.18 -1.25 17.32 2.25 0.04 -1.21 16 24 F -0.18 -1.71 17.24 2.25 0.04 -1.67 16 25 N -0.31 -3.99 11.52 31.41 0.36 -3.62 16 26 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.41 7.68 7.79 -40.82 -0.32 7.36 16 30 H 0.43 5.86 8.29 -40.82 -0.34 5.52 16 31 H 0.18 2.31 5.91 -52.49 -0.31 2.00 16 32 H 0.18 0.68 8.06 -52.48 -0.42 0.26 16 33 H 0.13 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.14 0.11 8.07 -51.93 -0.42 -0.31 16 LS Contribution 324.42 15.07 4.89 4.89 Total: -1.00 -32.85 324.42 -4.36 -37.20 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -2.61 Total: 6.71 kcal Atomic # 6 Polarization: 17.51 SS G_CDS: -2.36 Total: 15.14 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.47 Total: -55.11 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: 0.16 Total: -19.68 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.11 Total: -4.60 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.85 -4.36 -37.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116847570.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.495 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds