Wall clock time and date at job start Tue Mar 31 2020 12:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00273 * 2 1 4 4 H 1.48490 * 109.47520 * 240.00288 * 3 2 1 5 5 H 1.48505 * 109.47088 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47033 * 119.99923 * 3 2 1 7 7 C 1.37878 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99695 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00156 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46919 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99854 * 179.97438 * 10 9 7 12 12 O 1.21363 * 119.99810 * 0.02562 * 11 10 9 13 13 C 1.49342 * 120.00099 * 180.02562 * 11 10 9 14 14 O 1.21383 * 119.99611 * 0.02562 * 13 11 10 15 15 N 1.34777 * 120.00103 * 180.02562 * 13 11 10 16 16 C 1.39930 * 119.99993 * 180.27738 * 15 13 11 17 17 C 1.40462 * 125.97765 * 359.44305 * 16 15 13 18 18 C 1.35223 * 107.86169 * 179.82834 * 17 16 15 19 19 N 1.34978 * 107.87877 * 0.42611 * 18 17 16 20 20 C 1.46499 * 125.97176 * 179.71014 * 19 18 17 21 21 C 1.53002 * 109.47136 * 124.99791 * 20 19 18 22 22 F 1.39904 * 109.46958 * 59.99992 * 21 20 19 23 23 F 1.39901 * 109.46855 * 179.97438 * 21 20 19 24 24 F 1.39892 * 109.47161 * 300.00123 * 21 20 19 25 25 N 1.31275 * 125.98051 * 179.74611 * 16 15 13 26 26 H 0.97003 * 120.00172 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46740 * 60.01058 * 9 7 2 28 28 H 1.08997 * 109.47481 * 300.00306 * 9 7 2 29 29 H 0.97000 * 119.99819 * 0.02562 * 10 9 7 30 30 H 0.97001 * 119.99727 * 359.97438 * 15 13 11 31 31 H 1.07998 * 126.07008 * 359.96982 * 17 16 15 32 32 H 1.08003 * 126.05830 * 180.13450 * 18 17 16 33 33 H 1.09003 * 109.46954 * 244.99527 * 20 19 18 34 34 H 1.08999 * 109.47140 * 4.99591 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5605 -5.1051 0.0000 13 6 2.7241 -6.0185 0.0006 14 8 3.9175 -5.7967 0.0010 15 7 2.2749 -7.2892 0.0006 16 6 3.1841 -8.3528 0.0070 17 6 4.5843 -8.2414 0.0027 18 6 5.0999 -9.4915 0.0154 19 7 4.0703 -10.3643 0.0178 20 6 4.1807 -11.8251 0.0243 21 6 3.3924 -12.3909 1.2073 22 9 2.0471 -12.0253 1.0889 23 9 3.4973 -13.7859 1.2132 24 9 3.9114 -11.8786 2.4012 25 7 2.8779 -9.6293 0.0124 26 1 -0.4850 0.8401 -0.0004 27 1 0.6241 -2.5567 -0.8904 28 1 0.6246 -2.5571 0.8896 29 1 3.1566 -3.4354 -0.0002 30 1 1.3212 -7.4664 0.0006 31 1 5.1489 -7.3208 -0.0065 32 1 6.1494 -9.7463 0.0180 33 1 3.7762 -12.2242 -0.9059 34 1 5.2287 -12.1099 0.1166 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116847570.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:51 Heat of formation + Delta-G solvation = -155.337604 kcal Electronic energy + Delta-G solvation = -25734.181638 eV Core-core repulsion = 21060.725312 eV Total energy + Delta-G solvation = -4673.456326 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.15015 -48.70296 -48.62681 -42.64463 -41.53418 -39.64451 -36.89211 -36.07429 -34.44048 -34.12289 -31.28652 -29.92685 -29.24316 -26.65457 -24.79401 -24.08809 -22.78731 -21.97705 -21.21464 -19.99885 -19.64729 -19.54761 -18.90009 -18.34915 -18.19513 -17.49626 -17.23507 -16.87125 -16.73159 -16.05409 -15.95790 -15.57827 -15.51172 -15.25836 -15.06826 -14.96358 -14.80817 -14.76386 -14.70692 -14.07918 -14.04773 -14.00190 -13.79246 -13.23865 -13.00935 -12.68516 -12.66512 -12.20724 -12.14074 -11.84843 -11.54067 -10.82427 -10.75872 -10.07823 -10.02869 -9.51914 -8.29657 -6.45849 -0.00922 0.66875 0.75331 1.42558 1.47590 1.49280 1.57745 1.63387 1.72613 2.19585 2.37002 2.59721 2.67296 2.92283 3.05861 3.15715 3.37569 3.66125 3.88735 4.10244 4.23818 4.38983 4.71000 4.86759 5.00517 5.18588 5.25040 5.46753 5.52021 5.71665 5.79475 5.88798 6.31300 6.57504 6.58823 6.67982 6.98460 7.26979 8.81738 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.038961 B = 0.002141 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.491946 B =13076.959812 C =13475.526550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.561 4.561 8 H 0.082 0.918 9 C 0.262 3.738 10 N -0.668 5.668 11 C 0.499 3.501 12 O -0.557 6.557 13 C 0.534 3.466 14 O -0.498 6.498 15 N -0.607 5.607 16 C 0.286 3.714 17 C -0.290 4.290 18 C 0.106 3.894 19 N -0.379 5.379 20 C 0.102 3.898 21 C 0.437 3.563 22 F -0.187 7.187 23 F -0.174 7.174 24 F -0.191 7.191 25 N -0.334 5.334 26 H 0.270 0.730 27 H 0.006 0.994 28 H 0.006 0.994 29 H 0.416 0.584 30 H 0.430 0.570 31 H 0.168 0.832 32 H 0.239 0.761 33 H 0.153 0.847 34 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.733 -27.042 -0.679 30.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.806 3.194 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.599 4.599 8 H 0.100 0.900 9 C 0.141 3.859 10 N -0.318 5.318 11 C 0.278 3.722 12 O -0.436 6.436 13 C 0.315 3.685 14 O -0.370 6.370 15 N -0.256 5.256 16 C 0.030 3.970 17 C -0.320 4.320 18 C -0.038 4.038 19 N -0.164 5.164 20 C -0.020 4.020 21 C 0.382 3.618 22 F -0.168 7.168 23 F -0.156 7.156 24 F -0.173 7.173 25 N -0.164 5.164 26 H 0.079 0.921 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.252 0.748 30 H 0.269 0.731 31 H 0.185 0.815 32 H 0.255 0.745 33 H 0.171 0.829 34 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 13.638 -27.813 -0.653 30.983 hybrid contribution -0.082 1.390 0.344 1.434 sum 13.556 -26.423 -0.309 29.699 Atomic orbital electron populations 1.70099 1.08021 1.28779 1.49514 1.25976 0.95796 1.03616 0.93725 0.85230 0.77958 0.76755 0.79455 1.18765 1.20972 1.18837 1.21543 0.94375 0.90429 1.53557 0.89954 1.18862 0.88334 0.83023 0.95700 1.46110 1.12604 1.04534 1.68547 1.19945 0.88113 0.84691 0.79414 1.90743 1.17125 1.84918 1.50849 1.19967 0.88403 0.83212 0.76947 1.90666 1.15879 1.84323 1.46174 1.42165 1.10964 1.02414 1.70105 1.19404 0.90663 0.87196 0.99709 1.22053 0.91402 1.00479 1.18042 1.23357 0.96341 0.87248 0.96895 1.47965 1.03357 1.05645 1.59411 1.23281 1.06699 0.74862 0.97151 1.21129 0.79174 0.76208 0.85302 1.93254 1.36209 1.91373 1.95989 1.93228 1.95936 1.29696 1.96711 1.93206 1.86491 1.86966 1.50626 1.77527 1.06066 1.01585 1.31231 0.92082 0.97559 0.97648 0.74754 0.73107 0.81478 0.74501 0.82937 0.78777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.17 13.29 21.45 0.28 -53.89 16 2 C 0.01 0.50 5.46 84.65 0.46 0.96 16 3 Si 0.98 41.73 29.54 68.60 2.03 43.75 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.56 -29.96 9.28 25.60 0.24 -29.72 16 8 H 0.08 4.03 7.60 -2.91 -0.02 4.01 16 9 C 0.26 13.86 5.43 85.63 0.46 14.32 16 10 N -0.67 -28.56 5.54 -468.24 -2.59 -31.15 16 11 C 0.50 20.01 7.89 87.24 0.69 20.70 16 12 O -0.56 -25.25 16.48 -3.29 -0.05 -25.31 16 13 C 0.53 17.78 7.85 87.24 0.69 18.47 16 14 O -0.50 -16.65 13.60 -3.35 -0.05 -16.69 16 15 N -0.61 -17.96 5.43 -308.90 -1.68 -19.64 16 16 C 0.29 7.77 8.10 133.40 1.08 8.85 16 17 C -0.29 -6.53 9.60 22.12 0.21 -6.32 16 18 C 0.11 1.35 11.43 83.51 0.95 2.31 16 19 N -0.38 -5.71 3.60 -348.10 -1.25 -6.97 16 20 C 0.10 0.58 6.50 86.38 0.56 1.14 16 21 C 0.44 5.76 3.28 71.98 0.24 5.99 16 22 F -0.19 -3.89 16.28 44.97 0.73 -3.15 16 23 F -0.17 -2.02 17.32 44.97 0.78 -1.24 16 24 F -0.19 -3.31 17.24 44.97 0.78 -2.53 16 25 N -0.33 -8.28 11.52 -54.53 -0.63 -8.91 16 26 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 27 H 0.01 0.37 8.14 -2.39 -0.02 0.36 16 28 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.42 15.90 7.79 -92.71 -0.72 15.18 16 30 H 0.43 12.22 8.29 -92.71 -0.77 11.45 16 31 H 0.17 4.15 5.91 -2.91 -0.02 4.13 16 32 H 0.24 0.23 8.06 -2.91 -0.02 0.21 16 33 H 0.15 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.20 -0.95 8.07 -2.39 -0.02 -0.97 16 Total: -1.00 -74.88 324.42 3.64 -71.23 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -0.28 Total: 17.80 kcal Atomic # 6 Polarization: 31.12 SS G_CDS: 5.58 Total: 36.70 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -5.87 Total: -120.56 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: -0.10 Total: -42.00 kcal Atomic # 9 Polarization: -9.22 SS G_CDS: 2.29 Total: -6.93 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Total: -74.88 3.64 -71.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116847570.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.103 kcal (2) G-P(sol) polarization free energy of solvation -74.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds