Wall clock time and date at job start Tue Mar 31 2020 12:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99649 * 2 1 4 4 H 1.48502 * 109.46847 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47003 * 299.99720 * 3 2 1 6 6 H 1.48499 * 109.47388 * 59.99726 * 3 2 1 7 7 C 1.38814 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00029 * 140.71545 * 7 2 1 9 9 N 1.36939 * 119.99540 * 320.70725 * 7 2 1 10 10 C 1.46500 * 119.99390 * 182.52185 * 9 7 2 11 11 C 1.50698 * 109.47404 * 270.00242 * 10 9 7 12 12 C 1.38239 * 119.99918 * 90.00135 * 11 10 9 13 13 C 1.38235 * 120.00069 * 179.97438 * 12 11 10 14 14 C 1.38232 * 120.00165 * 0.09634 * 13 12 11 15 15 C 1.38241 * 119.99944 * 359.86065 * 14 13 12 16 16 C 1.38232 * 120.00127 * 269.98105 * 11 10 9 17 17 C 1.46497 * 120.00485 * 2.53131 * 9 7 2 18 18 C 1.50700 * 109.46807 * 276.60375 * 17 9 7 19 19 C 1.38596 * 120.41347 * 99.52486 * 18 17 9 20 20 C 1.38641 * 118.46263 * 179.78175 * 19 18 17 21 21 C 1.38319 * 119.21214 * 0.51743 * 20 19 18 22 22 Cl 1.73603 * 119.61666 * 179.70425 * 21 20 19 23 23 N 1.31989 * 120.76526 * 359.72145 * 21 20 19 24 24 C 1.32085 * 121.67035 * 0.02562 * 23 21 20 25 25 F 1.35102 * 119.64394 * 179.97438 * 24 23 21 26 26 H 0.97000 * 120.00129 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46564 * 150.00474 * 10 9 7 28 28 H 1.08997 * 109.47306 * 30.00624 * 10 9 7 29 29 H 1.07995 * 119.99868 * 359.70076 * 12 11 10 30 30 H 1.07999 * 120.00222 * 179.97438 * 13 12 11 31 31 H 1.07994 * 120.00620 * 179.97438 * 14 13 12 32 32 H 1.08000 * 120.00012 * 180.02562 * 15 14 13 33 33 H 1.07996 * 120.00302 * 0.02562 * 16 11 10 34 34 H 1.09004 * 109.47336 * 36.59806 * 17 9 7 35 35 H 1.08993 * 109.47318 * 156.60209 * 17 9 7 36 36 H 1.07997 * 120.76923 * 359.97438 * 19 18 17 37 37 H 1.08005 * 120.39512 * 180.24181 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0104 -1.2021 -0.0005 8 1 2.9072 -1.3075 -0.5927 9 7 1.5578 -2.2543 0.7501 10 6 2.3200 -3.5046 0.7931 11 6 1.8511 -4.4172 -0.3107 12 6 2.4524 -4.3634 -1.5543 13 6 2.0226 -5.2008 -2.5667 14 6 0.9901 -6.0906 -2.3361 15 6 0.3894 -6.1450 -1.0923 16 6 0.8199 -5.3083 -0.0796 17 6 0.3114 -2.1297 1.5098 18 6 0.5916 -1.4533 2.8270 19 6 0.3325 -0.1016 2.9907 20 6 0.6013 0.4784 4.2210 21 6 1.1258 -0.3023 5.2352 22 17 1.4734 0.4148 6.7775 23 7 1.3653 -1.5861 5.0439 24 6 1.1170 -2.1730 3.8870 25 9 1.3785 -3.4899 3.7360 26 1 -0.4850 0.8400 -0.0004 27 1 2.1662 -3.9909 1.7564 28 1 3.3801 -3.2887 0.6602 29 1 3.2550 -3.6641 -1.7362 30 1 2.4920 -5.1585 -3.5384 31 1 0.6540 -6.7445 -3.1271 32 1 -0.4170 -6.8405 -0.9120 33 1 0.3500 -5.3503 0.8919 34 1 -0.4031 -1.5349 0.9407 35 1 -0.1040 -3.1208 1.6915 36 1 -0.0723 0.4855 2.1797 37 1 0.4075 1.5283 4.3841 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137478034.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:07 Heat of formation + Delta-G solvation = 44.680628 kcal Electronic energy + Delta-G solvation = -24448.348691 eV Core-core repulsion = 20746.211749 eV Total energy + Delta-G solvation = -3702.136942 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.079 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -48.59383 -39.69813 -38.72381 -36.57759 -35.95270 -32.69476 -31.99464 -31.06839 -30.38348 -29.75622 -26.18704 -25.73911 -23.24161 -22.91874 -22.04628 -21.34946 -20.13601 -17.81048 -17.34422 -16.84037 -16.27769 -15.77811 -15.41011 -15.00570 -14.64834 -14.58204 -14.24451 -13.86493 -13.48523 -13.44028 -13.34905 -12.92762 -12.79907 -12.71380 -12.08965 -11.94513 -11.48668 -11.32573 -11.18029 -10.98191 -10.92015 -10.77434 -10.56831 -10.38841 -10.27644 -10.01310 -9.46687 -9.45414 -8.77988 -8.41088 -8.31374 -8.14583 -7.19047 -6.06412 -3.31348 1.20117 1.50154 1.89794 1.91679 1.92389 3.22737 3.36342 3.41231 3.85829 4.08646 4.24726 4.41144 4.93511 5.07822 5.21358 5.33074 5.34321 5.37108 5.48169 5.52602 5.62340 5.79723 5.89824 5.94934 6.05016 6.18223 6.32806 6.43315 6.52254 6.57190 6.59202 6.82017 6.95455 6.96739 7.00590 7.26462 7.44838 7.53753 7.60256 7.74896 8.10288 8.88838 9.57348 9.99617 10.89453 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.013745 B = 0.004859 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.554802 B = 5760.724560 C = 7236.544787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.004 3.996 3 Si 0.868 3.132 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.245 4.245 8 H 0.083 0.917 9 N -0.570 5.570 10 C 0.171 3.829 11 C -0.080 4.080 12 C -0.102 4.102 13 C -0.125 4.125 14 C -0.137 4.137 15 C -0.126 4.126 16 C -0.113 4.113 17 C 0.153 3.847 18 C -0.121 4.121 19 C -0.021 4.021 20 C -0.171 4.171 21 C 0.188 3.812 22 Cl -0.044 7.044 23 N -0.521 5.521 24 C 0.314 3.686 25 F -0.111 7.111 26 H 0.257 0.743 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.116 0.884 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.149 0.851 35 H 0.037 0.963 36 H 0.166 0.834 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.479 -4.018 3.489 5.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.194 4.194 3 Si 0.697 3.303 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.373 4.373 8 H 0.101 0.899 9 N -0.286 5.286 10 C 0.045 3.955 11 C -0.083 4.083 12 C -0.121 4.121 13 C -0.143 4.143 14 C -0.156 4.156 15 C -0.144 4.144 16 C -0.132 4.132 17 C 0.027 3.973 18 C -0.128 4.128 19 C -0.047 4.047 20 C -0.192 4.192 21 C 0.023 3.977 22 Cl -0.016 7.016 23 N -0.238 5.238 24 C 0.160 3.840 25 F -0.090 7.090 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.134 0.866 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.165 0.835 35 H 0.056 0.944 36 H 0.183 0.817 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.168 -4.373 4.257 6.105 hybrid contribution 0.315 1.197 -0.432 1.311 sum 0.147 -3.176 3.824 4.973 Atomic orbital electron populations 1.69885 1.05436 1.25592 1.51321 1.24437 0.94729 0.97747 1.02458 0.86720 0.80989 0.84866 0.77735 1.20235 1.21886 1.20912 1.19280 1.06710 0.88604 1.22694 0.89934 1.44256 1.24123 1.09954 1.50285 1.20078 0.95589 0.85634 0.94169 1.20994 0.95448 0.94660 0.97164 1.21007 1.00184 0.97977 0.92888 1.21050 0.97721 0.96896 0.98665 1.20945 0.97722 0.99999 0.96930 1.21019 0.99929 0.99769 0.93699 1.20995 0.97132 0.96151 0.98907 1.20727 0.91294 0.97951 0.87362 1.21987 0.97540 0.95480 0.97776 1.21955 0.92709 0.94155 0.95888 1.21903 1.02803 1.01430 0.93071 1.20914 0.99782 0.88765 0.88210 1.98371 1.93801 1.80723 1.28711 1.65896 1.20908 1.12062 1.24960 1.17794 0.97419 0.79424 0.89334 1.91548 1.91492 1.30867 1.95054 0.93151 0.92133 0.92340 0.86570 0.86999 0.87137 0.87009 0.86840 0.83522 0.94433 0.81689 0.84007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.09 8.76 55.49 0.49 -20.61 16 2 C 0.00 0.09 3.78 -17.43 -0.07 0.02 16 3 Si 0.87 19.41 29.69 -169.99 -5.05 14.37 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.25 -5.91 9.56 -15.06 -0.14 -6.06 16 8 H 0.08 2.01 8.05 -52.49 -0.42 1.59 16 9 N -0.57 -12.49 2.51 -175.99 -0.44 -12.93 16 10 C 0.17 3.31 5.76 -5.19 -0.03 3.28 16 11 C -0.08 -1.46 5.46 -104.62 -0.57 -2.03 16 12 C -0.10 -1.78 9.70 -39.58 -0.38 -2.17 16 13 C -0.13 -1.95 10.05 -39.58 -0.40 -2.35 16 14 C -0.14 -2.03 10.05 -39.58 -0.40 -2.43 16 15 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 16 C -0.11 -1.91 9.70 -39.58 -0.38 -2.30 16 17 C 0.15 3.24 5.05 -5.20 -0.03 3.21 16 18 C -0.12 -2.43 5.34 -104.40 -0.56 -2.98 16 19 C -0.02 -0.40 8.91 -39.30 -0.35 -0.75 16 20 C -0.17 -2.89 9.87 -39.40 -0.39 -3.28 16 21 C 0.19 3.29 7.27 -17.45 -0.13 3.16 16 22 Cl -0.04 -0.65 29.11 -51.86 -1.51 -2.16 16 23 N -0.52 -10.12 10.35 -10.70 -0.11 -10.23 16 24 C 0.31 6.19 8.37 -17.35 -0.15 6.05 16 25 F -0.11 -2.11 14.74 2.25 0.03 -2.08 16 26 H 0.26 5.94 8.25 -40.82 -0.34 5.61 16 27 H 0.06 1.12 5.98 -51.93 -0.31 0.81 16 28 H 0.06 1.11 7.98 -51.93 -0.41 0.70 16 29 H 0.12 1.99 8.06 -52.49 -0.42 1.56 16 30 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 31 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 32 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 33 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 34 H 0.15 3.43 4.84 -51.93 -0.25 3.18 16 35 H 0.04 0.75 7.83 -51.93 -0.41 0.34 16 36 H 0.17 3.28 5.77 -52.49 -0.30 2.98 16 37 H 0.14 2.00 8.06 -52.48 -0.42 1.58 16 LS Contribution 332.44 15.07 5.01 5.01 Total: -1.00 -25.19 332.44 -9.73 -34.91 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -3.78 Total: 4.64 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -4.37 Total: -10.93 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -0.07 Total: -43.77 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.03 Total: -2.08 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.05 Total: 14.37 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.51 Total: -2.16 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -25.19 -9.73 -34.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137478034.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.595 kcal (2) G-P(sol) polarization free energy of solvation -25.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds