Wall clock time and date at job start Tue Mar 31 2020 13:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35676 * 116.99725 * 2 1 4 4 C 1.38893 * 119.67209 * 180.02562 * 3 2 1 5 5 C 1.38420 * 119.13877 * 180.30397 * 4 3 2 6 6 C 1.50699 * 120.74570 * 179.70218 * 5 4 3 7 7 F 1.39898 * 109.47006 * 244.99267 * 6 5 4 8 8 F 1.39902 * 109.47469 * 4.99535 * 6 5 4 9 9 N 1.46902 * 109.46896 * 124.99600 * 6 5 4 10 10 C 1.46902 * 110.99753 * 179.97438 * 9 6 5 11 11 C 1.53006 * 109.47238 * 180.02562 * 10 9 6 12 12 C 1.52994 * 109.47186 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47184 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99508 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00119 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00341 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99955 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46670 * 90.00273 * 17 15 13 19 19 H 1.48501 * 109.47185 * 210.00119 * 17 15 13 20 20 H 1.48495 * 109.47098 * 330.00087 * 17 15 13 21 21 C 1.38764 * 118.50239 * 359.45390 * 5 4 3 22 22 C 1.38225 * 119.27263 * 0.54381 * 21 5 4 23 23 Cl 1.73599 * 119.59554 * 179.69743 * 22 21 5 24 24 N 1.32048 * 120.80757 * 359.72905 * 22 21 5 25 25 H 1.09000 * 109.47231 * 59.99940 * 1 2 3 26 26 H 1.08998 * 109.47330 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46993 * 299.99563 * 1 2 3 28 28 H 1.08002 * 120.42707 * 0.02562 * 4 3 2 29 29 H 1.00898 * 111.00606 * 303.94990 * 9 6 5 30 30 H 1.09002 * 109.47197 * 300.00150 * 10 9 6 31 31 H 1.08994 * 109.47501 * 59.99739 * 10 9 6 32 32 H 1.08994 * 109.46795 * 300.00171 * 11 10 9 33 33 H 1.08995 * 109.46709 * 59.99721 * 11 10 9 34 34 H 1.09002 * 109.47168 * 300.00010 * 12 11 10 35 35 H 1.08994 * 109.47582 * 59.99631 * 12 11 10 36 36 H 0.97005 * 120.00489 * 179.97438 * 16 15 13 37 37 H 1.07990 * 120.36279 * 180.26440 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4323 1.2737 -0.0005 5 6 4.0492 2.5129 0.0059 6 6 5.5520 2.6254 0.0123 7 9 5.9705 3.2124 1.2112 8 9 6.1156 1.3502 -0.1044 9 7 5.9855 3.4576 -1.1180 10 6 7.4482 3.5903 -1.1434 11 6 7.8607 4.4623 -2.3311 12 6 9.3842 4.5998 -2.3580 13 6 9.7905 5.4592 -3.5274 14 1 9.0373 5.8661 -4.1858 15 6 11.1236 5.7259 -3.7567 16 7 12.0408 5.2300 -2.9553 17 14 11.6271 6.7906 -5.2067 18 1 11.6711 8.2135 -4.7842 19 1 12.9703 6.3742 -5.6838 20 1 10.6403 6.6305 -6.3047 21 6 3.2526 3.6491 0.0010 22 6 1.8774 3.5104 0.0014 23 17 0.8729 4.9263 0.0034 24 7 1.3183 2.3141 0.0010 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.0222 0.3690 -0.0014 29 1 5.6403 3.0894 -1.9916 30 1 7.7872 4.0545 -0.2173 31 1 7.9009 2.6037 -1.2421 32 1 7.5218 3.9984 -3.2573 33 1 7.4081 5.4488 -2.2319 34 1 9.7236 5.0634 -1.4317 35 1 9.8365 3.6132 -2.4573 36 1 12.9787 5.4174 -3.1168 37 1 3.7023 4.6310 0.0015 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157637922.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:26 Heat of formation + Delta-G solvation = -127.898414 kcal Electronic energy + Delta-G solvation = -23942.142537 eV Core-core repulsion = 19801.752782 eV Total energy + Delta-G solvation = -4140.389755 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.084 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.25302 -48.32498 -41.98099 -39.30422 -37.86385 -37.54162 -35.52690 -34.42680 -32.70372 -31.88573 -28.92095 -28.22207 -26.44976 -24.82913 -24.23343 -23.00966 -22.04492 -19.91114 -19.33287 -18.56540 -18.36148 -18.24160 -17.55832 -17.24596 -16.98979 -16.53724 -16.43319 -16.16686 -15.41716 -15.35082 -15.13048 -14.99758 -14.63836 -14.56504 -14.33380 -13.85403 -13.59904 -13.41941 -13.20977 -13.10313 -12.83075 -12.75948 -12.49781 -12.42096 -12.35972 -12.10214 -11.63354 -11.45692 -11.30288 -11.23515 -11.11048 -10.54104 -10.36879 -9.75484 -8.18848 -6.29647 -0.53920 -0.27212 0.48590 1.42129 1.43186 1.54122 1.66254 2.06940 2.15841 2.42276 2.64260 3.01981 3.14931 3.25782 3.47102 3.58707 3.74647 4.01058 4.12259 4.19772 4.28281 4.40027 4.43726 4.60442 4.69129 4.74712 4.81517 4.86187 4.93454 5.21235 5.32152 5.55207 5.72493 5.86724 5.87353 5.89256 6.25421 6.25728 6.87639 7.39770 8.93106 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.019043 B = 0.002527 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.983314 B =11079.641323 C =11779.806645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.306 6.306 3 C 0.337 3.663 4 C -0.150 4.150 5 C -0.055 4.055 6 C 0.495 3.505 7 F -0.180 7.180 8 F -0.211 7.211 9 N -0.682 5.682 10 C 0.059 3.941 11 C -0.088 4.088 12 C 0.024 3.976 13 C -0.541 4.541 14 H 0.063 0.937 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.965 3.035 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.262 1.262 21 C -0.134 4.134 22 C 0.206 3.794 23 Cl -0.006 7.006 24 N -0.529 5.529 25 H 0.061 0.939 26 H 0.128 0.872 27 H 0.061 0.939 28 H 0.170 0.830 29 H 0.380 0.620 30 H 0.072 0.928 31 H 0.042 0.958 32 H 0.060 0.940 33 H 0.062 0.938 34 H -0.008 1.008 35 H -0.007 1.007 36 H 0.263 0.737 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.778 -8.718 7.147 28.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.212 6.212 3 C 0.158 3.842 4 C -0.172 4.172 5 C -0.064 4.064 6 C 0.369 3.631 7 F -0.162 7.162 8 F -0.193 7.193 9 N -0.323 5.323 10 C -0.068 4.068 11 C -0.126 4.126 12 C -0.014 4.014 13 C -0.579 4.579 14 H 0.081 0.919 15 C -0.200 4.200 16 N -0.575 5.575 17 Si 0.789 3.211 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.186 1.186 21 C -0.155 4.155 22 C 0.044 3.956 23 Cl 0.023 6.977 24 N -0.256 5.256 25 H 0.080 0.920 26 H 0.146 0.854 27 H 0.080 0.920 28 H 0.187 0.813 29 H 0.204 0.796 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.011 0.989 35 H 0.011 0.989 36 H 0.072 0.928 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -26.580 -8.399 7.529 28.874 hybrid contribution 1.568 -0.091 -0.654 1.702 sum -25.011 -8.490 6.875 27.293 Atomic orbital electron populations 1.23203 0.74938 1.05320 1.02713 1.86293 1.25000 1.22676 1.87238 1.19441 0.88700 0.84249 0.91859 1.21101 0.92593 0.99349 1.04128 1.19833 0.92406 0.93929 1.00260 1.19404 0.87682 0.74488 0.81506 1.93066 1.91602 1.84382 1.47115 1.93086 1.86938 1.43368 1.95870 1.61209 1.14184 1.50075 1.06806 1.22030 0.84356 0.99600 1.00850 1.21342 0.96320 0.99090 0.95844 1.18973 0.91816 0.95152 0.95476 1.21685 0.92486 1.31186 1.12502 0.91897 1.25987 0.96910 0.97526 0.99558 1.70097 1.01121 1.46497 1.39753 0.85452 0.77585 0.78776 0.79263 1.19846 1.20933 1.18600 1.21544 0.91254 1.01033 1.01686 1.21201 0.88745 0.87859 0.97821 1.98439 1.69756 1.33358 1.96170 1.66578 1.41811 0.98062 1.19099 0.92038 0.85366 0.92033 0.81260 0.79554 0.90911 0.93983 0.92118 0.91884 0.98934 0.98904 0.92815 0.81263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.38 113.37 1.18 1.54 16 2 O -0.31 -5.30 10.48 -89.94 -0.94 -6.24 16 3 C 0.34 6.62 7.49 84.78 0.63 7.26 16 4 C -0.15 -2.90 9.43 22.47 0.21 -2.69 16 5 C -0.05 -1.14 5.25 -19.70 -0.10 -1.24 16 6 C 0.49 12.13 2.11 85.56 0.18 12.32 16 7 F -0.18 -5.04 16.52 44.97 0.74 -4.29 16 8 F -0.21 -5.41 15.31 44.97 0.69 -4.72 16 9 N -0.68 -17.37 6.19 -512.94 -3.18 -20.55 16 10 C 0.06 1.93 5.41 86.30 0.47 2.40 16 11 C -0.09 -3.39 5.41 30.59 0.17 -3.23 16 12 C 0.02 1.21 4.97 29.85 0.15 1.36 16 13 C -0.54 -30.28 9.11 25.60 0.23 -30.05 16 14 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 15 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 16 N -0.93 -56.76 13.29 21.45 0.28 -56.48 16 17 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 21 C -0.13 -2.63 9.37 22.39 0.21 -2.42 16 22 C 0.21 4.08 7.27 84.66 0.62 4.69 16 23 Cl -0.01 -0.10 29.10 -2.72 -0.08 -0.18 16 24 N -0.53 -10.77 9.19 -299.78 -2.76 -13.53 16 25 H 0.06 0.71 8.10 -2.39 -0.02 0.69 16 26 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.71 8.10 -2.39 -0.02 0.69 16 28 H 0.17 2.89 7.27 -2.91 -0.02 2.87 16 29 H 0.38 8.29 8.72 -89.70 -0.78 7.50 16 30 H 0.07 2.51 7.68 -2.39 -0.02 2.49 16 31 H 0.04 1.39 7.68 -2.39 -0.02 1.38 16 32 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.06 2.40 8.14 -2.39 -0.02 2.39 16 34 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 36 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 37 H 0.17 3.12 8.06 -2.92 -0.02 3.10 16 Total: -1.00 -64.55 344.98 1.52 -63.03 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 0.33 Total: 6.75 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 4.40 Total: -9.73 kcal Atomic # 7 Polarization: -84.90 SS G_CDS: -5.65 Total: -90.55 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.94 Total: -6.24 kcal Atomic # 9 Polarization: -10.44 SS G_CDS: 1.43 Total: -9.01 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -0.08 Total: -0.18 kcal Total: -64.55 1.52 -63.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157637922.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.864 kcal (2) G-P(sol) polarization free energy of solvation -64.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds