Wall clock time and date at job start Tue Mar 31 2020 13:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47384 * 2 1 4 4 H 1.09000 * 109.47004 * 304.39665 * 3 2 1 5 5 C 1.50701 * 109.47409 * 184.40286 * 3 2 1 6 6 H 1.07997 * 120.00157 * 240.00241 * 5 3 2 7 7 C 1.37879 * 120.00132 * 59.99163 * 5 3 2 8 8 N 1.31517 * 119.99813 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00037 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47164 * 60.00594 * 9 7 5 11 11 H 1.48504 * 109.47137 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47041 * 300.00179 * 9 7 5 13 13 N 1.46898 * 109.47454 * 64.39874 * 3 2 1 14 14 C 1.46903 * 111.00257 * 207.18663 * 13 3 2 15 15 F 1.39897 * 109.46531 * 55.60090 * 14 13 3 16 16 F 1.39895 * 109.47430 * 295.60156 * 14 13 3 17 17 C 1.50703 * 109.46992 * 175.59655 * 14 13 3 18 18 C 1.38193 * 119.54990 * 180.02562 * 17 14 13 19 19 C 1.38600 * 119.24914 * 179.97438 * 18 17 14 20 20 C 1.39048 * 118.38648 * 0.02562 * 19 18 17 21 21 O 1.35937 * 120.47455 * 179.97438 * 20 19 18 22 22 C 1.42900 * 117.00085 * 359.97438 * 21 20 19 23 23 C 1.38862 * 119.04935 * 359.97438 * 20 19 18 24 24 Cl 1.73597 * 119.67072 * 180.02562 * 23 20 19 25 25 N 1.31886 * 119.55154 * 0.02562 * 17 14 13 26 26 H 1.08990 * 109.47688 * 174.95326 * 1 2 3 27 27 H 1.08999 * 109.46889 * 294.95873 * 1 2 3 28 28 H 1.09004 * 109.46531 * 54.95501 * 1 2 3 29 29 H 1.09001 * 109.46998 * 239.99600 * 2 1 3 30 30 H 1.08999 * 109.47281 * 120.00090 * 2 1 3 31 31 H 0.96997 * 119.99947 * 179.97438 * 8 7 5 32 32 H 1.00904 * 110.99587 * 83.23478 * 13 3 2 33 33 H 1.08003 * 120.37388 * 359.97438 * 18 17 14 34 34 H 1.07999 * 120.80312 * 180.02562 * 19 18 17 35 35 H 1.09003 * 109.47585 * 180.02562 * 22 21 20 36 36 H 1.09001 * 109.46922 * 300.00119 * 22 21 20 37 37 H 1.09006 * 109.47126 * 59.99841 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6138 1.9785 -0.8480 5 6 3.5431 1.4438 -0.1091 6 1 4.1408 1.8910 0.6714 7 6 4.1553 0.8739 -1.2052 8 7 3.4275 0.3296 -2.1558 9 14 6.0184 0.8751 -1.3400 10 1 6.5988 0.1443 -0.1848 11 1 6.4238 0.2072 -2.6030 12 1 6.5139 2.2750 -1.3398 13 7 1.6391 2.1037 1.2490 14 6 1.5118 3.5548 1.0591 15 9 0.6175 3.8115 0.0144 16 9 2.7632 4.0957 0.7453 17 6 0.9963 4.1840 2.3277 18 6 0.7975 5.5507 2.3787 19 6 0.3226 6.1228 3.5484 20 6 0.0637 5.2920 4.6329 21 8 -0.4025 5.8081 5.8009 22 6 -0.6063 7.2216 5.8500 23 6 0.2881 3.9275 4.5058 24 17 -0.0303 2.8754 5.8493 25 7 0.7410 3.4230 3.3742 26 1 -0.3634 -1.0236 -0.0904 27 1 -0.3633 0.4336 0.9317 28 1 -0.3632 0.5901 -0.8414 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8582 -0.0710 -2.9271 32 1 2.2859 1.8918 1.9940 33 1 1.0097 6.1659 1.5168 34 1 0.1578 7.1880 3.6158 35 1 -0.9786 7.5011 6.8356 36 1 0.3382 7.7316 5.6607 37 1 -1.3336 7.5105 5.0911 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161053289.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:51 Heat of formation + Delta-G solvation = -113.156832 kcal Electronic energy + Delta-G solvation = -25333.279888 eV Core-core repulsion = 21193.529376 eV Total energy + Delta-G solvation = -4139.750512 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.084 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.92976 -47.98783 -41.90065 -39.47921 -37.77400 -37.62836 -34.37395 -33.49555 -33.07376 -31.70404 -29.03359 -28.19678 -25.91449 -24.93886 -24.40936 -22.86669 -21.55747 -19.57327 -19.15913 -18.76969 -18.64418 -18.20342 -17.63207 -17.02784 -16.73209 -16.47413 -15.64896 -15.29350 -15.24392 -14.94982 -14.82872 -14.68895 -14.47222 -14.35867 -14.33151 -13.94172 -13.39244 -13.15882 -13.04192 -12.82709 -12.67834 -12.58028 -12.46833 -12.45701 -12.31572 -12.10800 -11.61288 -11.56077 -11.17482 -10.93649 -10.87274 -10.47969 -9.76697 -9.61436 -8.09742 -6.28142 -0.39551 -0.13249 0.68797 1.40423 1.41381 1.49111 1.89396 2.21249 2.26525 2.41065 2.94026 3.16306 3.35470 3.46199 3.49245 3.87403 3.94773 4.07284 4.32864 4.42648 4.56014 4.57507 4.61502 4.71139 4.81953 4.85488 4.91965 5.04990 5.34698 5.39097 5.53762 5.69562 5.93318 5.94819 5.97900 6.13749 6.41897 6.49740 6.85393 7.41169 8.91139 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.018497 B = 0.003885 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.409976 B = 7204.949868 C = 7575.984188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.097 4.097 3 C 0.215 3.785 4 H 0.010 0.990 5 C -0.558 4.558 6 H 0.051 0.949 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.953 3.047 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.276 1.276 13 N -0.672 5.672 14 C 0.500 3.500 15 F -0.190 7.190 16 F -0.216 7.216 17 C 0.040 3.960 18 C -0.087 4.087 19 C -0.137 4.137 20 C 0.122 3.878 21 O -0.306 6.306 22 C 0.007 3.993 23 C 0.123 3.877 24 Cl -0.015 7.015 25 N -0.416 5.416 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.029 0.971 29 H 0.069 0.931 30 H 0.033 0.967 31 H 0.264 0.736 32 H 0.362 0.638 33 H 0.170 0.830 34 H 0.203 0.797 35 H 0.127 0.873 36 H 0.077 0.923 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.679 15.629 15.475 23.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.136 4.136 3 C 0.107 3.893 4 H 0.027 0.973 5 C -0.597 4.597 6 H 0.070 0.930 7 C -0.178 4.178 8 N -0.548 5.548 9 Si 0.779 3.221 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.202 1.202 13 N -0.310 5.310 14 C 0.373 3.627 15 F -0.171 7.171 16 F -0.197 7.197 17 C -0.099 4.099 18 C -0.108 4.108 19 C -0.163 4.163 20 C 0.071 3.929 21 O -0.217 6.217 22 C -0.086 4.086 23 C -0.044 4.044 24 Cl 0.013 6.987 25 N -0.127 5.127 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.087 0.913 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.184 0.816 33 H 0.188 0.812 34 H 0.220 0.780 35 H 0.145 0.855 36 H 0.095 0.905 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.269 14.356 15.422 23.019 hybrid contribution 1.820 0.788 -0.657 2.090 sum -7.449 15.145 14.765 22.424 Atomic orbital electron populations 1.21554 0.96467 0.99805 1.00368 1.21320 0.94284 0.97350 1.00662 1.19096 0.92645 0.92229 0.85328 0.97252 1.21989 0.93032 1.38265 1.06370 0.93047 1.25625 1.02379 0.94525 0.95231 1.69992 1.36612 1.38376 1.09816 0.85695 0.80711 0.78171 0.77560 1.19546 1.20598 1.20196 1.61367 1.55892 1.02786 1.10930 1.19307 0.73900 0.88562 0.80956 1.92967 1.68736 1.94450 1.60970 1.93104 1.44486 1.88184 1.93975 1.20592 1.04997 0.91783 0.92565 1.22098 0.94729 0.93439 1.00485 1.22039 1.01167 1.02754 0.90307 1.19641 0.94023 0.91258 0.87971 1.86220 1.78361 1.27657 1.29482 1.23652 1.03039 0.75628 1.06321 1.21044 1.05073 0.87579 0.90749 1.98397 1.93413 1.67000 1.39862 1.66460 1.08424 1.39865 0.97927 0.93182 0.92978 0.95150 0.91281 0.94807 0.92708 0.81600 0.81236 0.77988 0.85532 0.90458 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.36 9.73 71.98 0.70 -4.66 16 2 C -0.10 -4.87 5.45 30.59 0.17 -4.71 16 3 C 0.21 11.23 1.86 44.17 0.08 11.31 16 4 H 0.01 0.56 6.97 -2.39 -0.02 0.55 16 5 C -0.56 -31.22 7.63 25.60 0.20 -31.03 16 6 H 0.05 2.87 7.59 -2.91 -0.02 2.85 16 7 C 0.02 1.28 5.29 84.65 0.45 1.73 16 8 N -0.91 -52.82 11.30 21.45 0.24 -52.57 16 9 Si 0.95 44.45 29.54 68.60 2.03 46.47 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 N -0.67 -30.50 5.18 -494.54 -2.56 -33.06 16 14 C 0.50 20.77 2.03 85.56 0.17 20.94 16 15 F -0.19 -8.22 15.96 44.97 0.72 -7.50 16 16 F -0.22 -9.58 15.92 44.97 0.72 -8.86 16 17 C 0.04 1.34 6.22 42.54 0.26 1.60 16 18 C -0.09 -2.07 9.62 22.35 0.21 -1.86 16 19 C -0.14 -2.30 9.14 22.55 0.21 -2.10 16 20 C 0.12 2.57 6.70 22.61 0.15 2.73 16 21 O -0.31 -5.09 9.97 -92.84 -0.93 -6.02 16 22 C 0.01 0.04 9.83 113.37 1.11 1.16 16 23 C 0.12 3.49 7.29 84.83 0.62 4.11 16 24 Cl -0.02 -0.40 28.66 -2.72 -0.08 -0.48 16 25 N -0.42 -14.14 9.33 -174.50 -1.63 -15.77 16 26 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.05 2.18 7.88 -2.39 -0.02 2.16 16 28 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.07 3.82 5.97 -2.39 -0.01 3.81 16 30 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 32 H 0.36 16.40 8.17 -89.69 -0.73 15.67 16 33 H 0.17 3.32 8.06 -2.91 -0.02 3.30 16 34 H 0.20 1.36 6.45 -2.91 -0.02 1.34 16 35 H 0.13 0.30 8.14 -2.39 -0.02 0.29 16 36 H 0.08 0.25 7.70 -2.39 -0.02 0.24 16 37 H 0.08 0.25 7.70 -2.38 -0.02 0.23 16 Total: -1.00 -68.41 335.30 3.24 -65.17 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.39 Total: 13.39 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 4.34 Total: -0.77 kcal Atomic # 7 Polarization: -97.46 SS G_CDS: -3.95 Total: -101.41 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.93 Total: -6.02 kcal Atomic # 9 Polarization: -17.80 SS G_CDS: 1.43 Total: -16.36 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -0.08 Total: -0.48 kcal Total: -68.41 3.24 -65.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161053289.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.986 kcal (2) G-P(sol) polarization free energy of solvation -68.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds