Wall clock time and date at job start Tue Mar 31 2020 13:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38224 * 120.00008 * 2 1 4 4 C 1.38206 * 120.04000 * 179.77206 * 3 2 1 5 5 C 1.38387 * 120.03629 * 0.50901 * 4 3 2 6 6 Cl 1.73592 * 120.00358 * 179.76981 * 5 4 3 7 7 C 1.38298 * 119.99651 * 359.49175 * 5 4 3 8 8 C 1.50699 * 120.01698 * 180.23352 * 7 5 4 9 9 N 1.46506 * 109.46987 * 90.00290 * 8 7 5 10 10 C 1.38099 * 119.99618 * 180.02562 * 9 8 7 11 11 N 1.32268 * 119.90679 * 359.97438 * 10 9 8 12 12 C 1.31968 * 121.86378 * 179.97438 * 11 10 9 13 13 C 1.38685 * 121.44810 * 359.97438 * 12 11 10 14 14 C 1.38010 * 119.62501 * 359.97438 * 13 12 11 15 15 C 1.41005 * 118.28306 * 359.75303 * 14 13 12 16 16 C 1.41015 * 120.70605 * 180.24549 * 15 14 13 17 17 H 1.07998 * 120.00231 * 154.91824 * 16 15 14 18 18 C 1.39952 * 119.99992 * 334.91800 * 16 15 14 19 19 N 1.30872 * 119.99884 * 343.58092 * 18 16 15 20 20 Si 1.86799 * 120.00187 * 163.58816 * 18 16 15 21 21 H 1.48498 * 109.47203 * 89.99747 * 20 18 16 22 22 H 1.48496 * 109.47133 * 209.99607 * 20 18 16 23 23 H 1.48500 * 109.47054 * 329.99920 * 20 18 16 24 24 C 1.38442 * 120.00082 * 180.02562 * 2 1 3 25 25 F 1.35101 * 120.01713 * 359.97438 * 24 2 1 26 26 H 1.08997 * 109.46941 * 269.97584 * 1 2 3 27 27 H 1.09001 * 109.47150 * 29.97383 * 1 2 3 28 28 H 1.08996 * 109.47366 * 149.97619 * 1 2 3 29 29 H 1.08001 * 119.98102 * 0.02562 * 3 2 1 30 30 H 1.08001 * 119.98331 * 180.24994 * 4 3 2 31 31 H 1.08998 * 109.47207 * 209.99722 * 8 7 5 32 32 H 1.08998 * 109.47630 * 330.00344 * 8 7 5 33 33 H 0.96999 * 119.99976 * 359.97438 * 9 8 7 34 34 H 1.07999 * 119.27347 * 179.97438 * 12 11 10 35 35 H 1.07997 * 120.18360 * 180.02562 * 13 12 11 36 36 H 1.08001 * 120.85741 * 180.02562 * 14 13 12 37 37 H 0.96997 * 119.99903 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5801 1.1980 0.0048 5 6 4.2737 0.0005 -0.0011 6 17 6.0096 0.0027 -0.0012 7 6 3.5838 -1.1981 -0.0011 8 6 4.3386 -2.5024 -0.0022 9 7 4.5841 -2.9257 1.3787 10 6 5.2648 -4.1007 1.6301 11 7 5.6938 -4.8427 0.6227 12 6 6.3484 -5.9718 0.8184 13 6 6.6207 -6.4382 2.0957 14 6 6.2016 -5.7110 3.1913 15 6 5.5085 -4.5038 2.9665 16 6 5.0617 -3.7178 4.0487 17 1 4.9096 -2.6565 3.9187 18 6 4.8152 -4.3130 5.2911 19 7 4.6835 -5.6121 5.3797 20 14 4.6742 -3.2533 6.8230 21 1 3.2588 -2.8474 7.0154 22 1 5.1320 -4.0277 8.0044 23 1 5.5195 -2.0424 6.6667 24 6 2.1992 -1.1989 -0.0005 25 9 1.5241 -2.3692 -0.0005 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3634 -0.8897 -0.5142 29 1 1.6578 2.1322 0.0004 30 1 4.1192 2.1339 0.0088 31 1 3.7499 -3.2625 -0.5159 32 1 5.2905 -2.3710 -0.5166 33 1 4.2692 -2.3802 2.1164 34 1 6.6793 -6.5451 -0.0350 35 1 7.1584 -7.3648 2.2323 36 1 6.4033 -6.0554 4.1949 37 1 4.5124 -6.0246 6.2408 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163653906.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:03 Heat of formation + Delta-G solvation = -0.707039 kcal Electronic energy + Delta-G solvation = -23859.871473 eV Core-core repulsion = 20155.766375 eV Total energy + Delta-G solvation = -3704.105099 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.079 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.89141 -39.53244 -38.36917 -36.51896 -35.08677 -33.92234 -32.66845 -31.24857 -30.35518 -28.63841 -27.05201 -25.73626 -25.03229 -22.32161 -21.70223 -20.96525 -20.41067 -17.72796 -17.21655 -17.00491 -16.66030 -15.87486 -15.46850 -15.24641 -14.79393 -14.37012 -13.91004 -13.76543 -13.60111 -13.48200 -13.31829 -13.11202 -12.86687 -12.60722 -12.57043 -12.02499 -11.90266 -11.59474 -11.42580 -11.29684 -11.24340 -11.12544 -10.90799 -10.73142 -10.52323 -9.75250 -9.27450 -8.97576 -8.93893 -8.62766 -8.04555 -7.85419 -6.77786 -6.47792 -4.20340 0.83874 0.93246 2.06505 2.77138 3.07165 3.10212 3.14635 3.22903 3.27279 3.94302 4.14045 4.46128 4.51691 4.60546 4.72356 4.75781 4.95449 5.27113 5.31163 5.40078 5.61329 5.76891 5.78292 5.81402 5.92922 6.07343 6.10745 6.23837 6.33466 6.48540 6.62079 6.80278 6.90501 7.15150 7.20719 7.67956 7.84329 8.03619 8.29724 8.51999 8.68687 8.81845 9.02800 9.81599 10.23381 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.011265 B = 0.004662 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.946551 B = 6004.613384 C = 6729.200113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.121 4.121 3 C -0.082 4.082 4 C -0.122 4.122 5 C -0.001 4.001 6 Cl -0.046 7.046 7 C -0.120 4.120 8 C 0.183 3.817 9 N -0.721 5.721 10 C 0.308 3.692 11 N -0.532 5.532 12 C 0.003 3.997 13 C -0.192 4.192 14 C -0.125 4.125 15 C 0.034 3.966 16 C -0.455 4.455 17 H 0.073 0.927 18 C 0.076 3.924 19 N -0.798 5.798 20 Si 0.904 3.096 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.262 1.262 24 C 0.128 3.872 25 F -0.122 7.122 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.403 0.597 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.124 0.876 37 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.424 13.138 -7.722 16.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.122 4.122 3 C -0.101 4.101 4 C -0.141 4.141 5 C -0.028 4.028 6 Cl -0.016 7.016 7 C -0.122 4.122 8 C 0.058 3.942 9 N -0.361 5.361 10 C 0.070 3.930 11 N -0.250 5.250 12 C -0.150 4.150 13 C -0.214 4.214 14 C -0.151 4.151 15 C 0.027 3.973 16 C -0.487 4.487 17 H 0.091 0.909 18 C -0.141 4.141 19 N -0.425 5.425 20 Si 0.728 3.272 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.186 1.186 24 C 0.108 3.892 25 F -0.101 7.101 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.157 0.843 30 H 0.157 0.843 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.239 0.761 34 H 0.135 0.865 35 H 0.112 0.888 36 H 0.142 0.858 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.471 13.103 -8.593 16.598 hybrid contribution 0.003 0.010 1.937 1.937 sum -5.468 13.114 -6.657 15.690 Atomic orbital electron populations 1.20732 0.89735 1.03402 1.03128 1.20024 0.97394 0.91752 1.03068 1.20822 0.93152 0.97283 0.98809 1.21070 0.94190 0.96945 1.01892 1.20625 0.85861 0.93617 1.02739 1.98404 1.08034 1.98717 1.96491 1.20062 0.92252 0.96502 1.03412 1.19748 0.98290 0.89148 0.87034 1.43541 1.64300 1.23756 1.04474 1.18414 0.96523 0.88703 0.89330 1.66536 1.15763 1.07747 1.34940 1.21346 1.04411 0.94404 0.94873 1.21406 1.05059 1.00604 0.94349 1.21329 0.99376 0.96487 0.97916 1.17890 0.94397 0.94586 0.90415 1.19109 1.40235 0.95367 0.93967 0.90866 1.25793 0.92775 0.95062 1.00439 1.69815 1.35101 1.10820 1.26719 0.86382 0.79281 0.80873 0.80623 1.19637 1.20142 1.18554 1.17203 0.88746 0.81408 1.01824 1.91541 1.79584 1.45581 1.93360 0.90494 0.90875 0.90964 0.84251 0.84316 0.91823 0.91064 0.76093 0.86536 0.88791 0.85776 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.83 36.00 0.35 -0.65 16 2 C -0.12 -1.39 5.89 -104.55 -0.62 -2.00 16 3 C -0.08 -0.79 9.70 -39.60 -0.38 -1.17 16 4 C -0.12 -1.31 9.83 -39.54 -0.39 -1.69 16 5 C 0.00 -0.01 6.31 -39.50 -0.25 -0.26 16 6 Cl -0.05 -0.65 27.30 -51.86 -1.42 -2.07 16 7 C -0.12 -1.86 5.26 -104.52 -0.55 -2.41 16 8 C 0.18 3.40 5.23 -5.19 -0.03 3.37 16 9 N -0.72 -15.57 5.60 -61.15 -0.34 -15.92 16 10 C 0.31 7.73 7.52 -155.02 -1.17 6.56 16 11 N -0.53 -13.24 9.54 -11.86 -0.11 -13.35 16 12 C 0.00 0.08 11.17 -17.33 -0.19 -0.12 16 13 C -0.19 -4.61 10.08 -39.50 -0.40 -5.01 16 14 C -0.12 -3.28 8.79 -38.62 -0.34 -3.62 16 15 C 0.03 0.91 5.59 -106.47 -0.60 0.31 16 16 C -0.46 -11.81 8.51 -37.89 -0.32 -12.14 16 17 H 0.07 1.81 6.70 -52.49 -0.35 1.45 16 18 C 0.08 1.90 5.19 -17.32 -0.09 1.81 16 19 N -0.80 -20.67 10.95 55.55 0.61 -20.06 16 20 Si 0.90 18.66 29.59 -169.99 -5.03 13.63 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 23 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 24 C 0.13 1.87 7.18 -39.43 -0.28 1.59 16 25 F -0.12 -2.00 15.69 2.25 0.04 -1.96 16 26 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 28 H 0.07 0.67 7.64 -51.93 -0.40 0.28 16 29 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 30 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.06 1.26 7.64 -51.93 -0.40 0.86 16 32 H 0.07 1.35 6.90 -51.93 -0.36 0.99 16 33 H 0.40 8.59 6.67 -40.82 -0.27 8.32 16 34 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 35 H 0.09 1.99 8.06 -52.49 -0.42 1.57 16 36 H 0.12 3.34 6.26 -52.49 -0.33 3.02 16 37 H 0.28 6.61 8.30 -40.82 -0.34 6.28 16 LS Contribution 334.63 15.07 5.04 5.04 Total: -1.00 -28.94 334.63 -10.23 -39.17 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -3.77 Total: 10.95 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -5.25 Total: -15.43 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.15 Total: -49.33 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.42 Total: -2.07 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.94 -10.23 -39.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163653906.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.467 kcal (2) G-P(sol) polarization free energy of solvation -28.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds