Wall clock time and date at job start Tue Mar 31 2020 13:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38224 * 120.00008 * 2 1 4 4 C 1.38206 * 120.04000 * 179.77206 * 3 2 1 5 5 C 1.38387 * 120.03629 * 0.50901 * 4 3 2 6 6 Cl 1.73592 * 120.00358 * 179.76981 * 5 4 3 7 7 C 1.38298 * 119.99651 * 359.49175 * 5 4 3 8 8 C 1.50699 * 120.01698 * 180.23352 * 7 5 4 9 9 N 1.46506 * 109.46987 * 90.00290 * 8 7 5 10 10 C 1.38099 * 119.99618 * 180.02562 * 9 8 7 11 11 N 1.32268 * 119.90679 * 359.97438 * 10 9 8 12 12 C 1.31968 * 121.86378 * 179.97438 * 11 10 9 13 13 C 1.38685 * 121.44810 * 359.97438 * 12 11 10 14 14 C 1.38010 * 119.62501 * 359.97438 * 13 12 11 15 15 C 1.41005 * 118.28306 * 359.75303 * 14 13 12 16 16 C 1.41015 * 120.70605 * 180.24549 * 15 14 13 17 17 H 1.07998 * 120.00231 * 154.91824 * 16 15 14 18 18 C 1.39952 * 119.99992 * 334.91800 * 16 15 14 19 19 N 1.30872 * 119.99884 * 343.58092 * 18 16 15 20 20 Si 1.86799 * 120.00187 * 163.58816 * 18 16 15 21 21 H 1.48498 * 109.47203 * 89.99747 * 20 18 16 22 22 H 1.48496 * 109.47133 * 209.99607 * 20 18 16 23 23 H 1.48500 * 109.47054 * 329.99920 * 20 18 16 24 24 C 1.38442 * 120.00082 * 180.02562 * 2 1 3 25 25 F 1.35101 * 120.01713 * 359.97438 * 24 2 1 26 26 H 1.08997 * 109.46941 * 269.97584 * 1 2 3 27 27 H 1.09001 * 109.47150 * 29.97383 * 1 2 3 28 28 H 1.08996 * 109.47366 * 149.97619 * 1 2 3 29 29 H 1.08001 * 119.98102 * 0.02562 * 3 2 1 30 30 H 1.08001 * 119.98331 * 180.24994 * 4 3 2 31 31 H 1.08998 * 109.47207 * 209.99722 * 8 7 5 32 32 H 1.08998 * 109.47630 * 330.00344 * 8 7 5 33 33 H 0.96999 * 119.99976 * 359.97438 * 9 8 7 34 34 H 1.07999 * 119.27347 * 179.97438 * 12 11 10 35 35 H 1.07997 * 120.18360 * 180.02562 * 13 12 11 36 36 H 1.08001 * 120.85741 * 180.02562 * 14 13 12 37 37 H 0.96997 * 119.99903 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5801 1.1980 0.0048 5 6 4.2737 0.0005 -0.0011 6 17 6.0096 0.0027 -0.0012 7 6 3.5838 -1.1981 -0.0011 8 6 4.3386 -2.5024 -0.0022 9 7 4.5841 -2.9257 1.3787 10 6 5.2648 -4.1007 1.6301 11 7 5.6938 -4.8427 0.6227 12 6 6.3484 -5.9718 0.8184 13 6 6.6207 -6.4382 2.0957 14 6 6.2016 -5.7110 3.1913 15 6 5.5085 -4.5038 2.9665 16 6 5.0617 -3.7178 4.0487 17 1 4.9096 -2.6565 3.9187 18 6 4.8152 -4.3130 5.2911 19 7 4.6835 -5.6121 5.3797 20 14 4.6742 -3.2533 6.8230 21 1 3.2588 -2.8474 7.0154 22 1 5.1320 -4.0277 8.0044 23 1 5.5195 -2.0424 6.6667 24 6 2.1992 -1.1989 -0.0005 25 9 1.5241 -2.3692 -0.0005 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3634 -0.8897 -0.5142 29 1 1.6578 2.1322 0.0004 30 1 4.1192 2.1339 0.0088 31 1 3.7499 -3.2625 -0.5159 32 1 5.2905 -2.3710 -0.5166 33 1 4.2692 -2.3802 2.1164 34 1 6.6793 -6.5451 -0.0350 35 1 7.1584 -7.3648 2.2323 36 1 6.4033 -6.0554 4.1949 37 1 4.5124 -6.0246 6.2408 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163653906.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:02 Heat of formation + Delta-G solvation = -14.921280 kcal Electronic energy + Delta-G solvation = -23860.487849 eV Core-core repulsion = 20155.766375 eV Total energy + Delta-G solvation = -3704.721474 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.079 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.05178 -40.65253 -40.13637 -37.56812 -36.62934 -35.84008 -33.78037 -32.41464 -32.29744 -30.30015 -27.93707 -27.42302 -26.67098 -23.61726 -23.11475 -22.57480 -21.96124 -19.15959 -18.81705 -18.38623 -18.02322 -17.33618 -16.82692 -16.69163 -16.23111 -15.70791 -15.46401 -15.18811 -15.01973 -14.67369 -14.60943 -14.34331 -14.11025 -13.87750 -13.81796 -13.67122 -13.29112 -13.22067 -13.09855 -12.68531 -12.56548 -12.34776 -12.20518 -12.09654 -11.85419 -11.63345 -11.14744 -10.74689 -10.11420 -9.94244 -9.76912 -9.58601 -8.66493 -8.34222 -6.16897 -0.13210 -0.04943 0.92097 1.02681 1.21052 1.38232 1.48393 1.54038 2.21012 2.25717 2.80497 2.91259 3.16079 3.42567 3.64202 3.76031 3.83301 4.07707 4.28721 4.35312 4.40975 4.62182 4.64068 4.65831 4.75761 4.88737 4.92239 4.98108 5.01109 5.09011 5.15898 5.21352 5.23372 5.30524 5.69423 5.76489 5.89970 6.09633 6.37222 6.71913 6.76888 6.87880 7.11252 7.89820 8.37481 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.011265 B = 0.004662 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.946551 B = 6004.613384 C = 6729.200113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.116 4.116 3 C -0.063 4.063 4 C -0.111 4.111 5 C -0.013 4.013 6 Cl -0.059 7.059 7 C -0.142 4.142 8 C 0.192 3.808 9 N -0.715 5.715 10 C 0.298 3.702 11 N -0.545 5.545 12 C 0.000 4.000 13 C -0.197 4.197 14 C -0.148 4.148 15 C 0.003 3.997 16 C -0.479 4.479 17 H 0.077 0.923 18 C 0.035 3.965 19 N -0.830 5.830 20 Si 0.978 3.022 21 H -0.263 1.263 22 H -0.269 1.269 23 H -0.258 1.258 24 C 0.100 3.900 25 F -0.142 7.142 26 H 0.082 0.918 27 H 0.106 0.894 28 H 0.061 0.939 29 H 0.187 0.813 30 H 0.170 0.830 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.401 0.599 34 H 0.149 0.851 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.552 15.971 -7.602 18.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.117 4.117 3 C -0.081 4.081 4 C -0.129 4.129 5 C -0.040 4.040 6 Cl -0.030 7.030 7 C -0.144 4.144 8 C 0.068 3.932 9 N -0.353 5.353 10 C 0.060 3.940 11 N -0.263 5.263 12 C -0.153 4.153 13 C -0.219 4.219 14 C -0.174 4.174 15 C -0.004 4.004 16 C -0.510 4.510 17 H 0.095 0.905 18 C -0.179 4.179 19 N -0.457 5.457 20 Si 0.799 3.201 21 H -0.188 1.188 22 H -0.193 1.193 23 H -0.182 1.182 24 C 0.080 3.920 25 F -0.121 7.121 26 H 0.101 0.899 27 H 0.124 0.876 28 H 0.080 0.920 29 H 0.204 0.796 30 H 0.187 0.813 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.238 0.762 34 H 0.166 0.834 35 H 0.139 0.861 36 H 0.129 0.871 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.606 15.945 -8.500 19.239 hybrid contribution 0.311 -0.849 1.800 2.014 sum -6.294 15.096 -6.700 17.675 Atomic orbital electron populations 1.20833 0.87789 1.04573 1.03815 1.20412 0.98854 0.91005 1.01428 1.21368 0.92695 0.98242 0.95791 1.21483 0.94876 0.96774 0.99788 1.20777 0.85262 0.94138 1.03820 1.98397 1.09263 1.98735 1.96636 1.19806 0.92684 0.95496 1.06403 1.19600 0.98037 0.90625 0.84951 1.43624 1.63221 1.22623 1.05847 1.18679 0.96514 0.89662 0.89151 1.66650 1.16430 1.08374 1.34890 1.21922 1.03357 0.94140 0.95919 1.21657 1.04997 1.01397 0.93890 1.21368 1.00651 0.97359 0.98063 1.18252 0.95293 0.95352 0.91511 1.19336 1.41270 0.95574 0.94862 0.90538 1.26654 0.91836 0.96256 1.03169 1.69879 1.35496 1.12467 1.27867 0.85267 0.79491 0.78953 0.76429 1.18804 1.19323 1.18208 1.17560 0.88625 0.82021 1.03750 1.91483 1.79858 1.46969 1.93785 0.89910 0.87571 0.91999 0.79584 0.81275 0.93859 0.91780 0.76239 0.83352 0.86111 0.87110 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 9.83 71.23 0.70 -0.98 16 2 C -0.12 -2.36 5.89 -19.82 -0.12 -2.47 16 3 C -0.06 -0.93 9.70 22.26 0.22 -0.72 16 4 C -0.11 -1.99 9.83 22.30 0.22 -1.77 16 5 C -0.01 -0.33 6.31 22.32 0.14 -0.19 16 6 Cl -0.06 -1.68 27.30 -2.72 -0.07 -1.75 16 7 C -0.14 -4.44 5.26 -19.80 -0.10 -4.54 16 8 C 0.19 7.47 5.23 85.63 0.45 7.91 16 9 N -0.71 -32.11 5.60 -347.36 -1.95 -34.05 16 10 C 0.30 15.50 7.52 134.05 1.01 16.51 16 11 N -0.55 -27.70 9.54 -191.45 -1.83 -29.53 16 12 C 0.00 -0.01 11.17 84.78 0.95 0.93 16 13 C -0.20 -9.57 10.08 22.32 0.22 -9.34 16 14 C -0.15 -8.04 8.79 22.89 0.20 -7.84 16 15 C 0.00 0.17 5.59 -21.06 -0.12 0.05 16 16 C -0.48 -25.56 8.51 23.37 0.20 -25.36 16 17 H 0.08 3.88 6.70 -2.91 -0.02 3.86 16 18 C 0.03 1.76 5.19 85.25 0.44 2.20 16 19 N -0.83 -43.91 10.95 21.83 0.24 -43.67 16 20 Si 0.98 38.28 29.59 68.60 2.03 40.31 16 21 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 22 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 23 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 24 C 0.10 2.92 7.18 22.37 0.16 3.08 16 25 F -0.14 -4.83 15.69 44.97 0.71 -4.13 16 26 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.11 0.88 8.09 -2.39 -0.02 0.86 16 28 H 0.06 1.06 7.64 -2.39 -0.02 1.04 16 29 H 0.19 1.09 8.06 -2.91 -0.02 1.07 16 30 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 31 H 0.04 1.82 7.64 -2.39 -0.02 1.80 16 32 H 0.06 2.54 6.90 -2.39 -0.02 2.53 16 33 H 0.40 17.83 6.67 -92.71 -0.62 17.21 16 34 H 0.15 5.96 8.06 -2.91 -0.02 5.94 16 35 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 36 H 0.11 6.21 6.26 -2.91 -0.02 6.20 16 37 H 0.29 13.74 8.30 -92.71 -0.77 12.98 16 Total: -1.00 -65.68 334.63 4.21 -61.48 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: 0.51 Total: 33.89 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: 4.57 Total: -22.54 kcal Atomic # 7 Polarization: -103.72 SS G_CDS: -3.53 Total: -107.25 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.71 Total: -4.13 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -0.07 Total: -1.75 kcal Total: -65.68 4.21 -61.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163653906.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.556 kcal (2) G-P(sol) polarization free energy of solvation -65.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds