Wall clock time and date at job start Tue Mar 31 2020 12:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 120.00109 * 2 1 4 4 H 1.48501 * 109.46975 * 270.27510 * 3 2 1 5 5 H 1.48502 * 109.47476 * 30.27295 * 3 2 1 6 6 H 1.48496 * 109.47129 * 150.27792 * 3 2 1 7 7 C 1.38810 * 119.99424 * 180.27025 * 2 1 3 8 8 H 1.08003 * 119.99500 * 200.11193 * 7 2 1 9 9 N 1.36942 * 120.00356 * 20.12246 * 7 2 1 10 10 C 1.46496 * 119.99847 * 212.73992 * 9 7 2 11 11 C 1.50695 * 109.47315 * 89.99517 * 10 9 7 12 12 C 1.38237 * 120.00147 * 269.72584 * 11 10 9 13 13 C 1.38233 * 119.99980 * 179.76616 * 12 11 10 14 14 C 1.38238 * 119.99797 * 0.50583 * 13 12 11 15 15 C 1.38230 * 120.00304 * 359.74833 * 14 13 12 16 16 C 1.38238 * 119.99767 * 89.99784 * 11 10 9 17 17 C 1.46495 * 119.99742 * 32.73309 * 9 7 2 18 18 H 1.08996 * 109.47547 * 347.92931 * 17 9 7 19 19 F 1.39900 * 109.47079 * 227.92713 * 17 9 7 20 20 C 1.50705 * 109.47011 * 107.92904 * 17 9 7 21 21 C 1.38709 * 120.78330 * 134.99805 * 20 17 9 22 22 C 1.38140 * 119.19698 * 179.97438 * 21 20 17 23 23 N 1.31912 * 120.78086 * 0.02562 * 22 21 20 24 24 C 1.31941 * 121.70520 * 359.97438 * 23 22 21 25 25 Cl 1.73599 * 119.63424 * 179.97438 * 24 23 22 26 26 C 1.38401 * 120.73228 * 359.74409 * 24 23 22 27 27 H 0.96997 * 119.99803 * 359.72570 * 1 2 3 28 28 H 1.09005 * 109.47027 * 209.99906 * 10 9 7 29 29 H 1.09001 * 109.47030 * 329.99644 * 10 9 7 30 30 H 1.07993 * 119.99866 * 359.97438 * 12 11 10 31 31 H 1.07998 * 120.00579 * 180.22997 * 13 12 11 32 32 H 1.08003 * 119.99785 * 179.72469 * 14 13 12 33 33 H 1.08004 * 120.00466 * 179.97438 * 15 14 13 34 34 H 1.08001 * 120.00087 * 0.02562 * 16 11 10 35 35 H 1.08004 * 120.39975 * 359.95676 * 21 20 17 36 36 H 1.08003 * 119.61287 * 179.97438 * 22 21 20 37 37 H 1.07998 * 120.42700 * 180.26615 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4919 2.0497 -1.4001 5 1 1.4507 2.6510 0.7058 6 1 3.5507 1.4384 0.6941 7 6 2.0102 -1.2022 -0.0057 8 1 3.0408 -1.2322 0.3158 9 7 1.3881 -2.3500 -0.4191 10 6 1.7469 -3.6357 0.1845 11 6 0.8689 -3.8908 1.3824 12 6 1.2660 -3.4608 2.6347 13 6 0.4583 -3.6905 3.7327 14 6 -0.7417 -4.3595 3.5800 15 6 -1.1364 -4.7942 2.3286 16 6 -0.3312 -4.5598 1.2297 17 6 0.3638 -2.2921 -1.4648 18 1 0.0798 -1.2541 -1.6381 19 9 -0.7589 -3.0212 -1.0587 20 6 0.9123 -2.8821 -2.7384 21 6 0.1576 -3.7685 -3.4927 22 6 0.6925 -4.2892 -4.6551 23 7 1.9055 -3.9533 -5.0497 24 6 2.6520 -3.1135 -4.3581 25 17 4.2415 -2.7092 -4.9270 26 6 2.1800 -2.5476 -3.1865 27 1 -0.4850 0.8400 0.0040 28 1 1.6053 -4.4322 -0.5461 29 1 2.7907 -3.6114 0.4977 30 1 2.2058 -2.9424 2.7546 31 1 0.7668 -3.3513 4.7105 32 1 -1.3707 -4.5430 4.4386 33 1 -2.0738 -5.3173 2.2094 34 1 -0.6392 -4.9000 0.2521 35 1 -0.8360 -4.0483 -3.1750 36 1 0.1109 -4.9802 -5.2474 37 1 2.7936 -1.8575 -2.6266 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165133387.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:46 Heat of formation + Delta-G solvation = 29.395372 kcal Electronic energy + Delta-G solvation = -24625.889667 eV Core-core repulsion = 20923.089907 eV Total energy + Delta-G solvation = -3702.799760 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.079 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -46.58514 -39.82959 -38.50653 -36.40732 -35.72269 -32.61394 -32.17072 -30.71127 -30.19755 -29.93329 -26.20730 -25.70338 -23.31242 -22.77722 -21.87456 -21.29515 -20.05038 -17.59766 -16.85720 -16.48432 -16.12599 -15.39978 -15.27005 -14.73201 -14.57788 -14.35387 -14.19882 -14.06112 -13.90998 -13.52560 -13.06467 -12.76141 -12.67736 -12.05807 -11.80498 -11.58839 -11.52085 -11.49044 -11.10226 -11.05552 -11.00951 -10.68973 -10.46706 -10.34081 -10.18669 -10.14910 -9.38077 -9.26470 -8.87275 -8.70238 -8.21121 -8.01194 -7.18245 -6.15259 -3.68410 1.22839 1.44325 2.05778 2.07689 2.11374 3.21000 3.30123 3.30684 3.90339 4.20322 4.48722 4.68144 4.78433 5.13030 5.17838 5.32943 5.45601 5.48515 5.50702 5.51447 5.64160 5.82213 5.92404 6.02451 6.06339 6.20007 6.30010 6.34482 6.53641 6.63073 6.70328 6.73764 6.75016 6.90883 7.13034 7.14891 7.44000 7.53392 7.72035 7.94040 8.08963 8.73393 9.37126 9.91670 10.89571 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.011043 B = 0.005602 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.927724 B = 4997.306947 C = 6419.056245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.011 3.989 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.268 4.268 8 H 0.079 0.921 9 N -0.576 5.576 10 C 0.174 3.826 11 C -0.076 4.076 12 C -0.097 4.097 13 C -0.129 4.129 14 C -0.138 4.138 15 C -0.130 4.130 16 C -0.100 4.100 17 C 0.376 3.624 18 H 0.137 0.863 19 F -0.219 7.219 20 C -0.060 4.060 21 C -0.165 4.165 22 C 0.106 3.894 23 N -0.490 5.490 24 C 0.165 3.835 25 Cl -0.045 7.045 26 C -0.115 4.115 27 H 0.262 0.738 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.142 0.858 36 H 0.159 0.841 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.857 -7.041 -2.608 7.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.190 4.190 3 Si 0.732 3.268 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.397 4.397 8 H 0.096 0.904 9 N -0.298 5.298 10 C 0.049 3.951 11 C -0.078 4.078 12 C -0.116 4.116 13 C -0.147 4.147 14 C -0.156 4.156 15 C -0.148 4.148 16 C -0.119 4.119 17 C 0.252 3.748 18 H 0.153 0.847 19 F -0.200 7.200 20 C -0.072 4.072 21 C -0.185 4.185 22 C -0.051 4.051 23 N -0.202 5.202 24 C 0.001 3.999 25 Cl -0.016 7.016 26 C -0.136 4.136 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.133 0.867 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.160 0.840 36 H 0.177 0.823 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.210 -7.204 -3.403 8.058 hybrid contribution -0.133 1.320 0.844 1.573 sum 1.076 -5.883 -2.559 6.505 Atomic orbital electron populations 1.70000 1.05458 1.26677 1.50057 1.25269 0.95251 0.99228 0.99258 0.86267 0.79455 0.82923 0.78172 1.20794 1.21450 1.19866 1.19172 0.94105 0.84312 1.42070 0.90363 1.44583 1.43787 1.03505 1.37879 1.20041 0.96013 0.88416 0.90658 1.20760 0.96427 0.94814 0.95839 1.20929 0.99820 0.98603 0.92248 1.20986 0.95303 1.00055 0.98347 1.20897 0.97009 1.00804 0.96937 1.20964 0.99232 1.01413 0.93172 1.20985 0.94262 0.98663 0.97964 1.19701 0.77051 0.95397 0.82689 0.84689 1.92746 1.54927 1.80763 1.91536 1.22005 0.93590 0.93915 0.97657 1.22176 1.02025 0.98308 0.96022 1.22493 0.90265 0.97870 0.94427 1.66891 1.06559 1.13590 1.33206 1.21566 0.88984 0.96718 0.92592 1.98374 1.21715 1.91852 1.89689 1.21727 0.96452 1.00820 0.94612 0.92761 0.93615 0.92131 0.86720 0.87274 0.87422 0.87322 0.86760 0.84003 0.82347 0.82585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.12 11.33 55.49 0.63 -22.49 16 2 C 0.01 0.28 4.87 -17.43 -0.08 0.20 16 3 Si 0.90 19.66 29.60 -169.99 -5.03 14.63 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.27 -6.34 9.15 -15.06 -0.14 -6.48 16 8 H 0.08 1.83 7.91 -52.48 -0.42 1.41 16 9 N -0.58 -12.57 2.01 -175.14 -0.35 -12.92 16 10 C 0.17 3.41 5.48 -5.20 -0.03 3.38 16 11 C -0.08 -1.49 5.34 -104.62 -0.56 -2.05 16 12 C -0.10 -1.85 9.70 -39.58 -0.38 -2.24 16 13 C -0.13 -2.23 10.05 -39.58 -0.40 -2.63 16 14 C -0.14 -2.29 10.05 -39.58 -0.40 -2.69 16 15 C -0.13 -2.23 10.05 -39.58 -0.40 -2.62 16 16 C -0.10 -1.88 8.46 -39.58 -0.33 -2.21 16 17 C 0.38 7.99 3.50 -5.19 -0.02 7.97 16 18 H 0.14 3.27 5.52 -51.93 -0.29 2.99 16 19 F -0.22 -4.71 13.27 2.25 0.03 -4.68 16 20 C -0.06 -1.10 5.21 -104.33 -0.54 -1.65 16 21 C -0.16 -2.57 9.49 -39.44 -0.37 -2.94 16 22 C 0.11 1.53 11.18 -17.55 -0.20 1.33 16 23 N -0.49 -8.07 10.34 -10.36 -0.11 -8.18 16 24 C 0.16 2.78 7.27 -17.44 -0.13 2.66 16 25 Cl -0.04 -0.68 29.11 -51.86 -1.51 -2.19 16 26 C -0.11 -2.06 9.23 -39.40 -0.36 -2.42 16 27 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 28 H 0.05 0.85 7.72 -51.93 -0.40 0.45 16 29 H 0.06 1.14 7.98 -51.93 -0.41 0.72 16 30 H 0.11 2.12 8.06 -52.49 -0.42 1.70 16 31 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 33 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 34 H 0.11 2.08 7.01 -52.49 -0.37 1.72 16 35 H 0.14 2.01 7.38 -52.48 -0.39 1.62 16 36 H 0.16 1.70 8.06 -52.48 -0.42 1.27 16 37 H 0.16 2.92 7.59 -52.49 -0.40 2.52 16 LS Contribution 335.71 15.07 5.06 5.06 Total: -1.00 -26.66 335.71 -9.55 -36.21 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -3.92 Total: 6.96 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -4.34 Total: -12.39 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: 0.17 Total: -43.59 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.03 Total: -4.68 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.51 Total: -2.19 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -26.66 -9.55 -36.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165133387.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.601 kcal (2) G-P(sol) polarization free energy of solvation -26.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds