Wall clock time and date at job start Tue Mar 31 2020 12:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 120.00109 * 2 1 4 4 H 1.48501 * 109.46975 * 270.27510 * 3 2 1 5 5 H 1.48502 * 109.47476 * 30.27295 * 3 2 1 6 6 H 1.48496 * 109.47129 * 150.27792 * 3 2 1 7 7 C 1.38810 * 119.99424 * 180.27025 * 2 1 3 8 8 H 1.08003 * 119.99500 * 200.11193 * 7 2 1 9 9 N 1.36942 * 120.00356 * 20.12246 * 7 2 1 10 10 C 1.46496 * 119.99847 * 212.73992 * 9 7 2 11 11 C 1.50695 * 109.47315 * 89.99517 * 10 9 7 12 12 C 1.38237 * 120.00147 * 269.72584 * 11 10 9 13 13 C 1.38233 * 119.99980 * 179.76616 * 12 11 10 14 14 C 1.38238 * 119.99797 * 0.50583 * 13 12 11 15 15 C 1.38230 * 120.00304 * 359.74833 * 14 13 12 16 16 C 1.38238 * 119.99767 * 89.99784 * 11 10 9 17 17 C 1.46495 * 119.99742 * 32.73309 * 9 7 2 18 18 H 1.08996 * 109.47547 * 347.92931 * 17 9 7 19 19 F 1.39900 * 109.47079 * 227.92713 * 17 9 7 20 20 C 1.50705 * 109.47011 * 107.92904 * 17 9 7 21 21 C 1.38709 * 120.78330 * 134.99805 * 20 17 9 22 22 C 1.38140 * 119.19698 * 179.97438 * 21 20 17 23 23 N 1.31912 * 120.78086 * 0.02562 * 22 21 20 24 24 C 1.31941 * 121.70520 * 359.97438 * 23 22 21 25 25 Cl 1.73599 * 119.63424 * 179.97438 * 24 23 22 26 26 C 1.38401 * 120.73228 * 359.74409 * 24 23 22 27 27 H 0.96997 * 119.99803 * 359.72570 * 1 2 3 28 28 H 1.09005 * 109.47027 * 209.99906 * 10 9 7 29 29 H 1.09001 * 109.47030 * 329.99644 * 10 9 7 30 30 H 1.07993 * 119.99866 * 359.97438 * 12 11 10 31 31 H 1.07998 * 120.00579 * 180.22997 * 13 12 11 32 32 H 1.08003 * 119.99785 * 179.72469 * 14 13 12 33 33 H 1.08004 * 120.00466 * 179.97438 * 15 14 13 34 34 H 1.08001 * 120.00087 * 0.02562 * 16 11 10 35 35 H 1.08004 * 120.39975 * 359.95676 * 21 20 17 36 36 H 1.08003 * 119.61287 * 179.97438 * 22 21 20 37 37 H 1.07998 * 120.42700 * 180.26615 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4919 2.0497 -1.4001 5 1 1.4507 2.6510 0.7058 6 1 3.5507 1.4384 0.6941 7 6 2.0102 -1.2022 -0.0057 8 1 3.0408 -1.2322 0.3158 9 7 1.3881 -2.3500 -0.4191 10 6 1.7469 -3.6357 0.1845 11 6 0.8689 -3.8908 1.3824 12 6 1.2660 -3.4608 2.6347 13 6 0.4583 -3.6905 3.7327 14 6 -0.7417 -4.3595 3.5800 15 6 -1.1364 -4.7942 2.3286 16 6 -0.3312 -4.5598 1.2297 17 6 0.3638 -2.2921 -1.4648 18 1 0.0798 -1.2541 -1.6381 19 9 -0.7589 -3.0212 -1.0587 20 6 0.9123 -2.8821 -2.7384 21 6 0.1576 -3.7685 -3.4927 22 6 0.6925 -4.2892 -4.6551 23 7 1.9055 -3.9533 -5.0497 24 6 2.6520 -3.1135 -4.3581 25 17 4.2415 -2.7092 -4.9270 26 6 2.1800 -2.5476 -3.1865 27 1 -0.4850 0.8400 0.0040 28 1 1.6053 -4.4322 -0.5461 29 1 2.7907 -3.6114 0.4977 30 1 2.2058 -2.9424 2.7546 31 1 0.7668 -3.3513 4.7105 32 1 -1.3707 -4.5430 4.4386 33 1 -2.0738 -5.3173 2.2094 34 1 -0.6392 -4.9000 0.2521 35 1 -0.8360 -4.0483 -3.1750 36 1 0.1109 -4.9802 -5.2474 37 1 2.7936 -1.8575 -2.6266 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165133387.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:45 Heat of formation + Delta-G solvation = 18.422859 kcal Electronic energy + Delta-G solvation = -24626.365471 eV Core-core repulsion = 20923.089907 eV Total energy + Delta-G solvation = -3703.275564 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.079 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.27152 -41.13745 -39.91066 -37.69026 -37.32990 -34.07949 -33.81468 -31.99986 -31.58222 -31.48243 -27.76359 -27.37854 -24.69771 -24.23547 -23.27206 -22.75289 -21.55615 -19.30284 -18.31234 -17.90475 -17.48617 -16.96489 -16.68795 -16.31784 -16.10326 -15.92962 -15.60719 -15.52108 -15.32483 -14.83828 -14.72994 -14.17786 -14.07046 -13.64929 -13.42813 -13.14486 -12.91063 -12.81895 -12.74416 -12.62435 -12.34004 -12.27236 -12.05626 -11.94901 -11.77577 -11.63593 -10.84794 -10.70928 -10.54711 -9.96453 -9.60751 -9.44375 -8.94830 -8.01318 -5.55604 -0.06799 0.11051 0.67736 0.71051 0.78617 1.45758 1.50303 1.56195 2.42109 2.62589 3.03064 3.08641 3.36266 3.54037 3.71919 3.96655 4.11052 4.12017 4.17593 4.23541 4.31700 4.42841 4.52255 4.57051 4.75887 4.79089 4.86082 4.91767 4.92808 5.05985 5.32855 5.35122 5.35876 5.53571 5.62941 5.75663 5.75720 5.99337 6.28568 6.35335 6.67736 6.91347 7.57444 8.11614 9.02321 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.011043 B = 0.005602 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.927724 B = 4997.306947 C = 6419.056245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.031 4.031 3 Si 0.955 3.045 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.262 4.262 8 H 0.078 0.922 9 N -0.585 5.585 10 C 0.177 3.823 11 C -0.097 4.097 12 C -0.118 4.118 13 C -0.134 4.134 14 C -0.137 4.137 15 C -0.134 4.134 16 C -0.115 4.115 17 C 0.381 3.619 18 H 0.104 0.896 19 F -0.223 7.223 20 C -0.073 4.073 21 C -0.159 4.159 22 C 0.120 3.880 23 N -0.497 5.497 24 C 0.161 3.839 25 Cl -0.032 7.032 26 C -0.124 4.124 27 H 0.255 0.745 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.133 0.867 32 H 0.141 0.859 33 H 0.136 0.864 34 H 0.114 0.886 35 H 0.158 0.842 36 H 0.204 0.796 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.474 -8.479 -2.849 8.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.229 4.229 3 Si 0.783 3.217 4 H -0.208 1.208 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.391 4.391 8 H 0.095 0.905 9 N -0.306 5.306 10 C 0.053 3.947 11 C -0.100 4.100 12 C -0.137 4.137 13 C -0.152 4.152 14 C -0.155 4.155 15 C -0.152 4.152 16 C -0.134 4.134 17 C 0.257 3.743 18 H 0.121 0.879 19 F -0.204 7.204 20 C -0.084 4.084 21 C -0.179 4.179 22 C -0.036 4.036 23 N -0.209 5.209 24 C -0.002 4.002 25 Cl -0.004 7.004 26 C -0.145 4.145 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.128 0.872 31 H 0.151 0.849 32 H 0.159 0.841 33 H 0.154 0.846 34 H 0.132 0.868 35 H 0.176 0.824 36 H 0.221 0.779 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.855 -8.660 -3.649 9.437 hybrid contribution -0.030 1.652 0.917 1.890 sum 0.826 -7.008 -2.732 7.567 Atomic orbital electron populations 1.70126 1.06628 1.26547 1.52474 1.25792 0.95675 1.01469 0.99914 0.85448 0.78522 0.79861 0.77849 1.20780 1.22545 1.19063 1.19341 0.94074 0.85093 1.40589 0.90453 1.44657 1.43572 1.03662 1.38751 1.20025 0.96164 0.87567 0.90981 1.20815 0.97088 0.96089 0.95987 1.21071 1.00364 0.99379 0.92919 1.21325 0.95377 0.99669 0.98867 1.21321 0.96874 0.99454 0.97881 1.21338 0.99914 1.01015 0.92918 1.21112 0.94371 0.99128 0.98739 1.19418 0.76879 0.94197 0.83849 0.87949 1.92726 1.55274 1.80649 1.91776 1.21663 0.94266 0.95407 0.97027 1.22370 1.02346 0.97199 0.95991 1.23177 0.89554 0.97105 0.93788 1.67039 1.07329 1.13440 1.33137 1.21597 0.89664 0.96687 0.92295 1.98374 1.20781 1.91791 1.89429 1.21560 0.96427 1.01258 0.95303 0.93523 0.93011 0.91984 0.87201 0.84887 0.84104 0.84649 0.86782 0.82445 0.77911 0.84146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.55 11.33 21.65 0.25 -49.30 16 2 C -0.03 -1.54 4.87 84.86 0.41 -1.13 16 3 Si 0.96 41.30 29.60 68.60 2.03 43.33 16 4 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.30 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.26 -12.68 9.15 84.03 0.77 -11.91 16 8 H 0.08 3.69 7.91 -2.91 -0.02 3.66 16 9 N -0.58 -26.06 2.01 -708.02 -1.42 -27.48 16 10 C 0.18 7.05 5.48 85.63 0.47 7.52 16 11 C -0.10 -3.85 5.34 -19.87 -0.11 -3.96 16 12 C -0.12 -4.52 9.70 22.27 0.22 -4.30 16 13 C -0.13 -4.46 10.05 22.27 0.22 -4.23 16 14 C -0.14 -4.21 10.05 22.27 0.22 -3.98 16 15 C -0.13 -4.33 10.05 22.27 0.22 -4.11 16 16 C -0.11 -4.24 8.46 22.27 0.19 -4.05 16 17 C 0.38 16.53 3.50 85.64 0.30 16.83 16 18 H 0.10 5.18 5.52 -2.39 -0.01 5.17 16 19 F -0.22 -9.71 13.27 44.97 0.60 -9.11 16 20 C -0.07 -2.64 5.21 -19.67 -0.10 -2.75 16 21 C -0.16 -4.66 9.49 22.36 0.21 -4.45 16 22 C 0.12 3.09 11.18 84.66 0.95 4.04 16 23 N -0.50 -15.24 10.34 -186.69 -1.93 -17.17 16 24 C 0.16 5.26 7.27 84.72 0.62 5.87 16 25 Cl -0.03 -0.94 29.11 -2.72 -0.08 -1.02 16 26 C -0.12 -4.45 9.23 22.39 0.21 -4.24 16 27 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 28 H 0.05 1.95 7.72 -2.38 -0.02 1.93 16 29 H 0.06 2.38 7.98 -2.39 -0.02 2.36 16 30 H 0.11 4.15 8.06 -2.91 -0.02 4.13 16 31 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 32 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 33 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 34 H 0.11 4.11 7.01 -2.91 -0.02 4.09 16 35 H 0.16 4.11 7.38 -2.91 -0.02 4.09 16 36 H 0.20 3.36 8.06 -2.91 -0.02 3.33 16 37 H 0.14 5.41 7.59 -2.91 -0.02 5.39 16 Total: -1.00 -57.71 335.71 5.33 -52.38 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 1.10 Total: 23.22 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 4.80 Total: -14.84 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -3.11 Total: -93.95 kcal Atomic # 9 Polarization: -9.71 SS G_CDS: 0.60 Total: -9.11 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -57.71 5.33 -52.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165133387.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.801 kcal (2) G-P(sol) polarization free energy of solvation -57.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds