Wall clock time and date at job start Tue Mar 31 2020 13:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47242 * 2 1 4 4 C 1.52999 * 109.47101 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.47340 * 180.02562 * 4 3 2 6 6 C 1.36936 * 120.00067 * 270.00257 * 5 4 3 7 7 H 1.07995 * 120.00199 * 135.45227 * 6 5 4 8 8 C 1.38813 * 119.99765 * 315.45653 * 6 5 4 9 9 N 1.31616 * 120.00343 * 2.70626 * 8 6 5 10 10 Si 1.86801 * 119.99971 * 182.71099 * 8 6 5 11 11 H 1.48500 * 109.47041 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47290 * 119.99712 * 10 8 6 13 13 H 1.48497 * 109.47354 * 239.99831 * 10 8 6 14 14 C 1.46499 * 119.99958 * 89.99654 * 5 4 3 15 15 F 1.39901 * 109.46977 * 64.97610 * 14 5 4 16 16 F 1.39905 * 109.47378 * 304.97862 * 14 5 4 17 17 O 1.42901 * 109.47077 * 184.97682 * 14 5 4 18 18 C 1.35936 * 116.99688 * 184.16248 * 17 14 5 19 19 C 1.39166 * 120.45259 * 177.54371 * 18 17 14 20 20 C 1.38489 * 118.38413 * 180.02562 * 19 18 17 21 21 C 1.38402 * 119.21438 * 359.97438 * 20 19 18 22 22 Cl 1.73606 * 119.57716 * 179.97438 * 21 20 19 23 23 N 1.31927 * 120.85450 * 359.97438 * 21 20 19 24 24 C 1.31884 * 121.75943 * 0.02562 * 23 21 20 25 25 H 1.08997 * 109.46660 * 300.00090 * 1 2 3 26 26 H 1.08996 * 109.47127 * 60.00006 * 1 2 3 27 27 H 1.08996 * 109.47183 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46805 * 240.00424 * 2 1 3 29 29 H 1.08999 * 109.47495 * 120.00348 * 2 1 3 30 30 H 1.08997 * 109.47367 * 60.00343 * 3 2 1 31 31 H 1.09006 * 109.47469 * 300.00340 * 3 2 1 32 32 H 1.09000 * 109.47121 * 60.00316 * 4 3 2 33 33 H 1.08999 * 109.47319 * 300.00154 * 4 3 2 34 34 H 0.96998 * 120.00495 * 184.99851 * 9 8 6 35 35 H 1.07993 * 120.80745 * 359.97438 * 19 18 17 36 36 H 1.08004 * 120.39389 * 179.72707 * 20 19 18 37 37 H 1.07994 * 119.65365 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.2862 3.4699 -1.1856 7 1 3.9501 4.4875 -1.3192 8 6 4.9491 2.8170 -2.2158 9 7 5.3115 1.5598 -2.0726 10 14 5.3268 3.7226 -3.8053 11 1 4.8178 5.1147 -3.7148 12 1 6.7953 3.7453 -4.0252 13 1 4.6672 3.0277 -4.9398 14 6 4.3032 3.5135 1.2690 15 9 5.3469 2.8789 1.9511 16 9 3.1439 3.4758 2.0514 17 8 4.6598 4.8730 1.0111 18 6 5.0060 5.6341 2.0829 19 6 5.4149 6.9529 1.9088 20 6 5.7583 7.6892 3.0304 21 6 5.6837 7.0943 4.2778 22 17 6.1126 8.0084 5.6901 23 7 5.2908 5.8416 4.4076 24 6 4.9555 5.1076 3.3645 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.9330 0.9287 -0.8909 33 1 3.9338 0.9284 0.8891 34 1 5.8377 1.1252 -2.7619 35 1 5.4641 7.3913 0.9231 36 1 6.0844 8.7142 2.9324 37 1 4.6383 4.0857 3.5101 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165159060.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:12 Heat of formation + Delta-G solvation = -96.274223 kcal Electronic energy + Delta-G solvation = -25458.091753 eV Core-core repulsion = 21319.073325 eV Total energy + Delta-G solvation = -4139.018427 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.084 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.42356 -46.50996 -40.47539 -37.92301 -36.56303 -36.10248 -33.81471 -32.56185 -31.38874 -30.11642 -28.19547 -25.46438 -24.41544 -23.68913 -22.71440 -21.21366 -20.27708 -18.95123 -18.05375 -17.39514 -17.17974 -16.70962 -15.81060 -15.24294 -14.89657 -14.67737 -14.59033 -14.08301 -13.62729 -13.45318 -13.35359 -13.28131 -13.19570 -13.11820 -12.89061 -12.67320 -12.26181 -12.09351 -11.70286 -11.49712 -11.43599 -11.36201 -11.19842 -10.99993 -10.55391 -10.38628 -10.19826 -10.14496 -9.94760 -9.68769 -9.65544 -8.82902 -8.48734 -7.28389 -6.14026 -3.95691 0.87239 1.07460 1.76615 2.65156 3.19999 3.28622 3.31380 3.54435 4.04377 4.23756 4.42522 4.58638 4.73528 4.83606 5.02658 5.15003 5.37679 5.50476 5.53321 5.60160 5.67282 5.82420 5.84937 6.08786 6.20695 6.26543 6.37731 6.44703 6.46946 6.75617 6.85793 6.97161 7.14608 7.47542 7.60207 7.66951 8.19711 8.77067 9.24376 9.78836 10.84834 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.013966 B = 0.004189 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.458686 B = 6682.186669 C = 8166.938923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.136 4.136 4 C 0.139 3.861 5 N -0.565 5.565 6 C -0.269 4.269 7 H 0.077 0.923 8 C 0.032 3.968 9 N -0.882 5.882 10 Si 0.913 3.087 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.284 1.284 14 C 0.627 3.373 15 F -0.211 7.211 16 F -0.205 7.205 17 O -0.277 6.277 18 C 0.088 3.912 19 C -0.087 4.087 20 C -0.117 4.117 21 C 0.133 3.867 22 Cl -0.039 7.039 23 N -0.443 5.443 24 C 0.049 3.951 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.134 0.866 33 H 0.028 0.972 34 H 0.265 0.735 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.811 6.534 6.834 9.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.176 4.176 4 C 0.016 3.984 5 N -0.295 5.295 6 C -0.397 4.397 7 H 0.095 0.905 8 C -0.170 4.170 9 N -0.522 5.522 10 Si 0.740 3.260 11 H -0.195 1.195 12 H -0.209 1.209 13 H -0.210 1.210 14 C 0.468 3.532 15 F -0.193 7.193 16 F -0.187 7.187 17 O -0.191 6.191 18 C 0.039 3.961 19 C -0.113 4.113 20 C -0.138 4.138 21 C -0.032 4.032 22 Cl -0.011 7.011 23 N -0.154 5.154 24 C -0.110 4.110 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.151 0.849 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.176 0.824 36 H 0.170 0.830 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.786 6.117 7.475 9.823 hybrid contribution 0.365 0.639 -1.001 1.243 sum -1.421 6.757 6.474 9.465 Atomic orbital electron populations 1.21759 0.96791 1.00561 1.01437 1.21437 0.94851 0.98023 1.01501 1.22174 0.99008 0.94982 1.01427 1.21668 0.90255 0.82412 1.04016 1.44691 1.74413 1.12828 0.97616 1.19092 1.33794 0.99191 0.87639 0.90525 1.25598 0.95524 0.95904 0.99949 1.69555 1.37124 1.09972 1.35566 0.86079 0.78215 0.79736 0.81973 1.19522 1.20885 1.20981 1.21046 0.73080 0.77651 0.81435 1.93110 1.60665 1.83099 1.82431 1.93065 1.52251 1.95988 1.77397 1.86629 1.80231 1.22028 1.30186 1.20127 0.95639 0.92483 0.87840 1.20946 0.98950 0.90923 1.00512 1.21640 1.00510 1.01606 0.90038 1.21488 1.02764 0.91082 0.87828 1.98380 1.91157 1.70705 1.40813 1.66883 1.09398 1.05102 1.34009 1.23273 1.00553 1.00763 0.86381 0.93245 0.92988 0.93541 0.92046 0.92794 0.93462 0.91961 0.84915 0.95368 0.92449 0.82400 0.82958 0.81114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.12 -1.94 5.93 -26.73 -0.16 -2.10 16 3 C -0.14 -2.66 5.45 -26.73 -0.15 -2.80 16 4 C 0.14 3.15 5.15 -4.04 -0.02 3.13 16 5 N -0.57 -13.77 2.71 -177.07 -0.48 -14.25 16 6 C -0.27 -6.89 8.68 -15.06 -0.13 -7.02 16 7 H 0.08 1.96 7.52 -52.49 -0.39 1.57 16 8 C 0.03 0.82 5.38 -17.43 -0.09 0.73 16 9 N -0.88 -23.17 10.71 55.49 0.59 -22.58 16 10 Si 0.91 19.92 29.56 -169.99 -5.02 14.89 16 11 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 13 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 14 C 0.63 13.97 2.29 59.85 0.14 14.11 16 15 F -0.21 -4.72 15.14 2.25 0.03 -4.69 16 16 F -0.20 -4.26 14.45 2.25 0.03 -4.23 16 17 O -0.28 -5.85 8.85 -19.54 -0.17 -6.03 16 18 C 0.09 1.56 6.50 -39.08 -0.25 1.31 16 19 C -0.09 -1.23 10.13 -39.14 -0.40 -1.62 16 20 C -0.12 -1.44 9.87 -39.43 -0.39 -1.83 16 21 C 0.13 1.91 7.27 -17.45 -0.13 1.78 16 22 Cl -0.04 -0.47 29.10 -51.86 -1.51 -1.98 16 23 N -0.44 -7.43 10.33 -10.24 -0.11 -7.53 16 24 C 0.05 0.86 9.45 -17.38 -0.16 0.70 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.92 7.10 -51.93 -0.37 0.55 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.13 3.31 5.11 -51.93 -0.27 3.05 16 33 H 0.03 0.62 7.98 -51.93 -0.41 0.21 16 34 H 0.26 6.64 8.32 -40.82 -0.34 6.30 16 35 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 37 H 0.17 3.10 5.13 -52.49 -0.27 2.84 16 LS Contribution 334.32 15.07 5.04 5.04 Total: -1.00 -27.06 334.32 -7.20 -34.26 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -4.23 Total: 2.39 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -1.37 Total: 4.70 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.01 Total: -44.36 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.17 Total: -6.03 kcal Atomic # 9 Polarization: -8.98 SS G_CDS: 0.07 Total: -8.92 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.51 Total: -1.98 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.06 -7.20 -34.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165159060.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.018 kcal (2) G-P(sol) polarization free energy of solvation -27.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds