Wall clock time and date at job start Tue Mar 31 2020 13:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47242 * 2 1 4 4 C 1.52999 * 109.47101 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.47340 * 180.02562 * 4 3 2 6 6 C 1.36936 * 120.00067 * 270.00257 * 5 4 3 7 7 H 1.07995 * 120.00199 * 135.45227 * 6 5 4 8 8 C 1.38813 * 119.99765 * 315.45653 * 6 5 4 9 9 N 1.31616 * 120.00343 * 2.70626 * 8 6 5 10 10 Si 1.86801 * 119.99971 * 182.71099 * 8 6 5 11 11 H 1.48500 * 109.47041 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47290 * 119.99712 * 10 8 6 13 13 H 1.48497 * 109.47354 * 239.99831 * 10 8 6 14 14 C 1.46499 * 119.99958 * 89.99654 * 5 4 3 15 15 F 1.39901 * 109.46977 * 64.97610 * 14 5 4 16 16 F 1.39905 * 109.47378 * 304.97862 * 14 5 4 17 17 O 1.42901 * 109.47077 * 184.97682 * 14 5 4 18 18 C 1.35936 * 116.99688 * 184.16248 * 17 14 5 19 19 C 1.39166 * 120.45259 * 177.54371 * 18 17 14 20 20 C 1.38489 * 118.38413 * 180.02562 * 19 18 17 21 21 C 1.38402 * 119.21438 * 359.97438 * 20 19 18 22 22 Cl 1.73606 * 119.57716 * 179.97438 * 21 20 19 23 23 N 1.31927 * 120.85450 * 359.97438 * 21 20 19 24 24 C 1.31884 * 121.75943 * 0.02562 * 23 21 20 25 25 H 1.08997 * 109.46660 * 300.00090 * 1 2 3 26 26 H 1.08996 * 109.47127 * 60.00006 * 1 2 3 27 27 H 1.08996 * 109.47183 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46805 * 240.00424 * 2 1 3 29 29 H 1.08999 * 109.47495 * 120.00348 * 2 1 3 30 30 H 1.08997 * 109.47367 * 60.00343 * 3 2 1 31 31 H 1.09006 * 109.47469 * 300.00340 * 3 2 1 32 32 H 1.09000 * 109.47121 * 60.00316 * 4 3 2 33 33 H 1.08999 * 109.47319 * 300.00154 * 4 3 2 34 34 H 0.96998 * 120.00495 * 184.99851 * 9 8 6 35 35 H 1.07993 * 120.80745 * 359.97438 * 19 18 17 36 36 H 1.08004 * 120.39389 * 179.72707 * 20 19 18 37 37 H 1.07994 * 119.65365 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.2862 3.4699 -1.1856 7 1 3.9501 4.4875 -1.3192 8 6 4.9491 2.8170 -2.2158 9 7 5.3115 1.5598 -2.0726 10 14 5.3268 3.7226 -3.8053 11 1 4.8178 5.1147 -3.7148 12 1 6.7953 3.7453 -4.0252 13 1 4.6672 3.0277 -4.9398 14 6 4.3032 3.5135 1.2690 15 9 5.3469 2.8789 1.9511 16 9 3.1439 3.4758 2.0514 17 8 4.6598 4.8730 1.0111 18 6 5.0060 5.6341 2.0829 19 6 5.4149 6.9529 1.9088 20 6 5.7583 7.6892 3.0304 21 6 5.6837 7.0943 4.2778 22 17 6.1126 8.0084 5.6901 23 7 5.2908 5.8416 4.4076 24 6 4.9555 5.1076 3.3645 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.9330 0.9287 -0.8909 33 1 3.9338 0.9284 0.8891 34 1 5.8377 1.1252 -2.7619 35 1 5.4641 7.3913 0.9231 36 1 6.0844 8.7142 2.9324 37 1 4.6383 4.0857 3.5101 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165159060.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:12 Heat of formation + Delta-G solvation = -110.912257 kcal Electronic energy + Delta-G solvation = -25458.726506 eV Core-core repulsion = 21319.073325 eV Total energy + Delta-G solvation = -4139.653180 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.084 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.15227 -48.24904 -41.73647 -39.36231 -37.91142 -37.56499 -35.34715 -33.75874 -33.21015 -31.40278 -29.72696 -27.25836 -25.89769 -24.96453 -24.05806 -22.85531 -21.81944 -20.51330 -19.61455 -19.10899 -18.44199 -18.28162 -17.47865 -16.68347 -16.39586 -16.20518 -16.07284 -15.42882 -15.24797 -15.10215 -14.75698 -14.70868 -14.66453 -14.53724 -14.46885 -14.16558 -13.74265 -13.59963 -13.26725 -13.15661 -12.91284 -12.71313 -12.56065 -12.38861 -12.06355 -11.92229 -11.82342 -11.68285 -11.31335 -11.07609 -10.90265 -10.73474 -9.76579 -9.16972 -8.05042 -5.92408 -0.32616 -0.10338 0.65216 1.10687 1.47593 1.50412 1.61338 2.32280 2.34184 2.56085 2.97744 3.19849 3.21303 3.35634 3.68363 3.89833 3.99266 4.16227 4.26662 4.30575 4.40041 4.44848 4.54215 4.72465 4.90585 4.97414 5.03435 5.05740 5.09887 5.28679 5.42531 5.48013 5.53754 5.63597 5.79980 6.32511 6.39336 6.86089 7.32978 7.87950 8.92690 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.013966 B = 0.004189 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.458686 B = 6682.186669 C = 8166.938923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C -0.123 4.123 4 C 0.137 3.863 5 N -0.583 5.583 6 C -0.282 4.282 7 H 0.072 0.928 8 C -0.011 4.011 9 N -0.908 5.908 10 Si 0.976 3.024 11 H -0.262 1.262 12 H -0.284 1.284 13 H -0.281 1.281 14 C 0.631 3.369 15 F -0.216 7.216 16 F -0.200 7.200 17 O -0.293 6.293 18 C 0.053 3.947 19 C -0.075 4.075 20 C -0.097 4.097 21 C 0.129 3.871 22 Cl -0.016 7.016 23 N -0.464 5.464 24 C 0.036 3.964 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.113 0.887 33 H 0.023 0.977 34 H 0.264 0.736 35 H 0.184 0.816 36 H 0.199 0.801 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.828 8.494 6.870 11.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.163 4.163 4 C 0.015 3.985 5 N -0.313 5.313 6 C -0.410 4.410 7 H 0.090 0.910 8 C -0.210 4.210 9 N -0.549 5.549 10 Si 0.801 3.199 11 H -0.186 1.186 12 H -0.210 1.210 13 H -0.207 1.207 14 C 0.471 3.529 15 F -0.199 7.199 16 F -0.183 7.183 17 O -0.207 6.207 18 C 0.006 3.994 19 C -0.101 4.101 20 C -0.117 4.117 21 C -0.037 4.037 22 Cl 0.012 6.988 23 N -0.176 5.176 24 C -0.121 4.121 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.130 0.870 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.201 0.799 36 H 0.216 0.784 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.815 8.081 7.531 11.194 hybrid contribution 0.420 0.157 -0.846 0.957 sum -1.395 8.238 6.685 10.701 Atomic orbital electron populations 1.21713 0.94510 1.02143 1.01661 1.21412 0.96814 0.95524 1.01694 1.22007 0.96685 0.97168 1.00406 1.21615 0.92224 0.81997 1.02666 1.44833 1.75048 1.13248 0.98213 1.19215 1.34183 0.99042 0.88580 0.91014 1.26295 0.95376 0.96494 1.02816 1.69707 1.37706 1.11016 1.36513 0.85110 0.77652 0.78922 0.78186 1.18610 1.20972 1.20740 1.20719 0.73105 0.78415 0.80624 1.93084 1.60937 1.83422 1.82430 1.93058 1.51957 1.96071 1.77169 1.86573 1.81153 1.21272 1.31704 1.20488 0.98099 0.93745 0.87089 1.21357 0.97113 0.89271 1.02396 1.22102 0.98163 1.03112 0.88291 1.21964 1.01562 0.90561 0.89570 1.98392 1.90807 1.69755 1.39818 1.66860 1.10424 1.06463 1.33867 1.22992 1.01746 1.00528 0.86840 0.92784 0.93030 0.91286 0.92452 0.92035 0.93706 0.93518 0.86994 0.95826 0.92545 0.79907 0.78351 0.82765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.91 71.98 0.71 -3.01 16 2 C -0.12 -3.73 5.93 30.59 0.18 -3.55 16 3 C -0.12 -4.90 5.45 30.59 0.17 -4.74 16 4 C 0.14 6.45 5.15 86.38 0.44 6.90 16 5 N -0.58 -29.26 2.71 -814.60 -2.21 -31.47 16 6 C -0.28 -14.73 8.68 84.03 0.73 -14.00 16 7 H 0.07 3.74 7.52 -2.91 -0.02 3.71 16 8 C -0.01 -0.54 5.38 84.86 0.46 -0.09 16 9 N -0.91 -48.80 10.71 21.65 0.23 -48.57 16 10 Si 0.98 40.99 29.56 68.60 2.03 43.02 16 11 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 12 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 13 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 14 C 0.63 29.00 2.29 127.77 0.29 29.29 16 15 F -0.22 -10.09 15.14 44.97 0.68 -9.41 16 16 F -0.20 -8.62 14.45 44.97 0.65 -7.97 16 17 O -0.29 -12.56 8.85 -92.83 -0.82 -13.39 16 18 C 0.05 1.88 6.50 22.59 0.15 2.03 16 19 C -0.08 -1.95 10.13 22.55 0.23 -1.72 16 20 C -0.10 -2.05 9.87 22.37 0.22 -1.83 16 21 C 0.13 3.40 7.27 84.72 0.62 4.02 16 22 Cl -0.02 -0.35 29.10 -2.72 -0.08 -0.43 16 23 N -0.46 -15.32 10.33 -186.32 -1.93 -17.24 16 24 C 0.04 1.30 9.45 84.78 0.80 2.10 16 25 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.04 1.77 7.10 -2.39 -0.02 1.76 16 31 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.11 5.81 5.11 -2.39 -0.01 5.80 16 33 H 0.02 1.08 7.98 -2.39 -0.02 1.07 16 34 H 0.26 13.53 8.32 -92.71 -0.77 12.75 16 35 H 0.18 3.77 8.06 -2.91 -0.02 3.74 16 36 H 0.20 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.16 5.90 5.13 -2.91 -0.01 5.88 16 Total: -1.00 -59.75 334.32 4.65 -55.10 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 1.10 Total: 14.94 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 5.00 Total: 15.42 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -3.90 Total: -97.28 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.82 Total: -13.39 kcal Atomic # 9 Polarization: -18.71 SS G_CDS: 1.33 Total: -17.38 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -0.08 Total: -0.43 kcal Total: -59.75 4.65 -55.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165159060.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.814 kcal (2) G-P(sol) polarization free energy of solvation -59.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds