Wall clock time and date at job start Tue Mar 31 2020 12:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35912 * 116.99952 * 2 1 4 4 C 1.39140 * 120.47494 * 0.02562 * 3 2 1 5 5 C 1.38526 * 118.37840 * 179.97438 * 4 3 2 6 6 C 1.38265 * 119.22175 * 359.97438 * 5 4 3 7 7 N 1.31848 * 120.88155 * 0.02562 * 6 5 4 8 8 C 1.31838 * 121.78043 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.65579 * 180.02562 * 8 7 6 10 10 N 1.46497 * 109.47108 * 269.99952 * 9 8 7 11 11 C 1.38537 * 120.00325 * 179.97438 * 10 9 8 12 12 C 1.40043 * 120.44555 * 0.02562 * 11 10 9 13 13 C 1.38807 * 118.59069 * 179.97438 * 12 11 10 14 14 Cl 1.73603 * 120.33628 * 179.97438 * 13 12 11 15 15 N 1.32202 * 119.32251 * 359.97438 * 13 12 11 16 16 C 1.33418 * 120.86425 * 359.97438 * 15 13 12 17 17 C 1.41573 * 119.23596 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00007 * 180.02562 * 17 16 15 19 19 C 1.40059 * 120.00297 * 359.97438 * 17 16 15 20 20 N 1.30691 * 119.99556 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00137 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47206 * 59.99881 * 21 19 17 23 23 H 1.48495 * 109.47325 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47165 * 300.00225 * 21 19 17 25 25 N 1.32563 * 120.45287 * 179.72281 * 11 10 9 26 26 H 1.09003 * 109.47196 * 60.00201 * 1 2 3 27 27 H 1.08999 * 109.46944 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47146 * 299.99797 * 1 2 3 29 29 H 1.08004 * 120.81197 * 359.95515 * 4 3 2 30 30 H 1.07998 * 120.39440 * 179.97438 * 5 4 3 31 31 H 1.08000 * 119.55716 * 179.72715 * 6 5 4 32 32 H 1.09004 * 109.47370 * 29.99829 * 9 8 7 33 33 H 1.08994 * 109.47299 * 149.99887 * 9 8 7 34 34 H 0.97007 * 120.00092 * 359.97438 * 10 9 8 35 35 H 1.08001 * 120.70625 * 359.97397 * 12 11 10 36 36 H 0.97001 * 119.99772 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2979 2.3842 0.0005 5 6 1.9715 3.5946 0.0011 6 6 3.3542 3.5976 0.0016 7 7 4.0334 2.4676 0.0011 8 6 3.4305 1.2951 0.0005 9 6 4.2542 0.0331 0.0006 10 7 4.5216 -0.3755 -1.3806 11 6 5.2666 -1.5158 -1.6338 12 6 5.7682 -2.2850 -0.5765 13 6 6.5093 -3.4203 -0.8743 14 17 7.1531 -4.4066 0.4011 15 7 6.7198 -3.7428 -2.1390 16 6 6.2295 -2.9926 -3.1273 17 6 6.4754 -3.3703 -4.4694 18 1 6.0847 -2.7719 -5.2791 19 6 7.2263 -4.5195 -4.7472 20 7 7.6995 -5.2435 -3.7674 21 14 7.5514 -5.0175 -6.5180 22 1 8.2895 -3.9307 -7.2102 23 1 8.3631 -6.2607 -6.5416 24 1 6.2595 -5.2571 -7.2099 25 7 5.5093 -1.8967 -2.8801 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2184 2.3519 0.0002 30 1 1.4232 4.5251 0.0011 31 1 3.8849 4.5382 -0.0025 32 1 5.1980 0.2151 0.5148 33 1 3.7074 -0.7577 0.5140 34 1 4.1771 0.1523 -2.1180 35 1 5.5823 -2.0011 0.4487 36 1 8.2193 -6.0396 -3.9597 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169204246.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:49 Heat of formation + Delta-G solvation = 48.546877 kcal Electronic energy + Delta-G solvation = -23287.726942 eV Core-core repulsion = 19605.677615 eV Total energy + Delta-G solvation = -3682.049327 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.078 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.94654 -38.95141 -38.34006 -35.86054 -35.43631 -33.56095 -32.51848 -31.52208 -30.78995 -29.22608 -27.72355 -26.41458 -26.06896 -23.09790 -22.51521 -21.97971 -21.15445 -18.35393 -17.96433 -17.32723 -16.90609 -16.27761 -16.00464 -15.68965 -14.88462 -14.66549 -14.30045 -14.14771 -13.89285 -13.82201 -13.56646 -13.31094 -13.04564 -12.73518 -12.64276 -12.29055 -11.71222 -11.56349 -11.36549 -11.32259 -11.04058 -10.75495 -10.37162 -10.14191 -10.00452 -9.90130 -9.72705 -9.05352 -8.96027 -8.60750 -8.18346 -7.41299 -7.06496 -6.50571 -4.73591 0.81319 1.03630 2.60448 2.94175 3.04228 3.04936 3.09063 3.12038 3.20441 3.43211 3.90958 4.03391 4.29024 4.36709 4.46028 4.68407 4.72438 4.85271 4.87641 5.02167 5.22088 5.30616 5.55730 5.75534 5.86253 5.90741 6.04226 6.16275 6.21826 6.42390 6.50487 6.89638 6.95031 7.00679 7.19801 7.77500 7.80650 8.17444 8.27395 8.60410 8.66052 9.12744 10.15862 10.30729 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.015115 B = 0.003248 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.050479 B = 8617.884907 C = 9414.097845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.297 6.297 3 C 0.098 3.902 4 C -0.170 4.170 5 C -0.129 4.129 6 C 0.057 3.943 7 N -0.430 5.430 8 C 0.091 3.909 9 C 0.197 3.803 10 N -0.720 5.720 11 C 0.460 3.540 12 C -0.403 4.403 13 C 0.270 3.730 14 Cl -0.083 7.083 15 N -0.528 5.528 16 C 0.437 3.563 17 C -0.397 4.397 18 H 0.095 0.905 19 C 0.066 3.934 20 N -0.703 5.703 21 Si 0.919 3.081 22 H -0.263 1.263 23 H -0.276 1.276 24 H -0.263 1.263 25 N -0.642 5.642 26 H 0.056 0.944 27 H 0.105 0.895 28 H 0.055 0.945 29 H 0.140 0.860 30 H 0.137 0.863 31 H 0.159 0.841 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.396 0.604 35 H 0.111 0.889 36 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.525 12.061 7.593 18.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.208 6.208 3 C 0.049 3.951 4 C -0.197 4.197 5 C -0.149 4.149 6 C -0.100 4.100 7 N -0.139 5.139 8 C -0.050 4.050 9 C 0.071 3.929 10 N -0.357 5.357 11 C 0.213 3.787 12 C -0.436 4.436 13 C 0.089 3.911 14 Cl -0.055 7.055 15 N -0.250 5.250 16 C 0.201 3.799 17 C -0.432 4.432 18 H 0.113 0.887 19 C -0.162 4.162 20 N -0.324 5.324 21 Si 0.743 3.257 22 H -0.188 1.188 23 H -0.201 1.201 24 H -0.188 1.188 25 N -0.372 5.372 26 H 0.075 0.925 27 H 0.123 0.877 28 H 0.074 0.926 29 H 0.158 0.842 30 H 0.155 0.845 31 H 0.177 0.823 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.231 0.769 35 H 0.129 0.871 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.155 11.269 6.952 17.314 hybrid contribution -1.359 0.365 0.147 1.415 sum -12.514 11.634 7.099 18.503 Atomic orbital electron populations 1.23142 0.78198 1.04596 1.01122 1.86240 1.21420 1.25423 1.87758 1.19986 0.93194 0.85362 0.96551 1.21708 1.00827 0.92117 1.05041 1.22020 0.95790 0.98218 0.98885 1.22690 0.91411 0.96487 0.99404 1.67587 1.39992 0.97465 1.08861 1.20791 0.88205 0.94295 1.01663 1.19802 0.97986 0.90072 0.85008 1.43855 1.59121 1.27009 1.05669 1.18051 0.86196 0.84821 0.89585 1.20921 1.20292 1.03937 0.98493 1.21425 0.91311 0.88172 0.90228 1.98291 1.86135 1.71937 1.49174 1.68582 1.27010 1.32892 0.96498 1.19443 0.85163 0.82703 0.92609 1.19299 1.26965 1.06844 0.90097 0.88733 1.26114 0.94601 0.95857 0.99599 1.70145 1.19534 1.09932 1.32780 0.86194 0.79398 0.78551 0.81569 1.18752 1.20125 1.18785 1.68207 1.27759 1.22246 1.18960 0.92534 0.87701 0.92650 0.84235 0.84477 0.82332 0.90594 0.90424 0.76937 0.87055 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.83 101.05 0.99 1.18 16 2 O -0.30 -3.64 9.55 -19.46 -0.19 -3.83 16 3 C 0.10 1.20 6.67 -39.08 -0.26 0.94 16 4 C -0.17 -1.58 9.14 -39.14 -0.36 -1.94 16 5 C -0.13 -1.08 10.11 -39.47 -0.40 -1.48 16 6 C 0.06 0.59 11.18 -17.53 -0.20 0.40 16 7 N -0.43 -5.91 10.27 -9.35 -0.10 -6.01 16 8 C 0.09 1.28 6.16 -82.42 -0.51 0.77 16 9 C 0.20 3.17 4.99 -5.19 -0.03 3.14 16 10 N -0.72 -13.92 5.70 -61.44 -0.35 -14.27 16 11 C 0.46 10.98 7.71 -154.99 -1.19 9.78 16 12 C -0.40 -9.50 9.23 -38.69 -0.36 -9.85 16 13 C 0.27 6.89 7.33 -17.18 -0.13 6.77 16 14 Cl -0.08 -1.82 29.15 -51.86 -1.51 -3.33 16 15 N -0.53 -15.09 7.86 -9.84 -0.08 -15.17 16 16 C 0.44 12.57 7.37 -158.35 -1.17 11.40 16 17 C -0.40 -10.94 9.37 -37.63 -0.35 -11.29 16 18 H 0.09 2.48 7.85 -52.49 -0.41 2.07 16 19 C 0.07 1.69 5.50 -17.35 -0.10 1.59 16 20 N -0.70 -18.80 11.42 55.55 0.63 -18.17 16 21 Si 0.92 18.66 29.56 -169.99 -5.02 13.64 16 22 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 23 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 24 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 25 N -0.64 -17.29 10.39 -11.90 -0.12 -17.41 16 26 H 0.06 0.37 7.70 -51.93 -0.40 -0.03 16 27 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.32 7.70 -51.93 -0.40 -0.08 16 29 H 0.14 0.90 6.45 -52.48 -0.34 0.56 16 30 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 31 H 0.16 1.19 8.06 -52.49 -0.42 0.76 16 32 H 0.08 1.24 7.97 -51.93 -0.41 0.83 16 33 H 0.08 1.23 7.35 -51.93 -0.38 0.85 16 34 H 0.40 7.50 8.59 -40.82 -0.35 7.15 16 35 H 0.11 2.31 6.85 -52.49 -0.36 1.95 16 36 H 0.28 6.70 8.29 -40.82 -0.34 6.36 16 LS Contribution 332.80 15.07 5.02 5.02 Total: -1.00 -32.68 332.80 -9.22 -41.91 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -3.46 Total: 6.21 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: -4.05 Total: 11.40 kcal Atomic # 7 Polarization: -71.01 SS G_CDS: -0.01 Total: -71.02 kcal Atomic # 8 Polarization: -3.64 SS G_CDS: -0.19 Total: -3.83 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.64 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -1.51 Total: -3.33 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.68 -9.22 -41.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169204246.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.454 kcal (2) G-P(sol) polarization free energy of solvation -32.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds