Wall clock time and date at job start Tue Mar 31 2020 12:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35912 * 116.99952 * 2 1 4 4 C 1.39140 * 120.47494 * 0.02562 * 3 2 1 5 5 C 1.38526 * 118.37840 * 179.97438 * 4 3 2 6 6 C 1.38265 * 119.22175 * 359.97438 * 5 4 3 7 7 N 1.31848 * 120.88155 * 0.02562 * 6 5 4 8 8 C 1.31838 * 121.78043 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.65579 * 180.02562 * 8 7 6 10 10 N 1.46497 * 109.47108 * 269.99952 * 9 8 7 11 11 C 1.38537 * 120.00325 * 179.97438 * 10 9 8 12 12 C 1.40043 * 120.44555 * 0.02562 * 11 10 9 13 13 C 1.38807 * 118.59069 * 179.97438 * 12 11 10 14 14 Cl 1.73603 * 120.33628 * 179.97438 * 13 12 11 15 15 N 1.32202 * 119.32251 * 359.97438 * 13 12 11 16 16 C 1.33418 * 120.86425 * 359.97438 * 15 13 12 17 17 C 1.41573 * 119.23596 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00007 * 180.02562 * 17 16 15 19 19 C 1.40059 * 120.00297 * 359.97438 * 17 16 15 20 20 N 1.30691 * 119.99556 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00137 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47206 * 59.99881 * 21 19 17 23 23 H 1.48495 * 109.47325 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47165 * 300.00225 * 21 19 17 25 25 N 1.32563 * 120.45287 * 179.72281 * 11 10 9 26 26 H 1.09003 * 109.47196 * 60.00201 * 1 2 3 27 27 H 1.08999 * 109.46944 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47146 * 299.99797 * 1 2 3 29 29 H 1.08004 * 120.81197 * 359.95515 * 4 3 2 30 30 H 1.07998 * 120.39440 * 179.97438 * 5 4 3 31 31 H 1.08000 * 119.55716 * 179.72715 * 6 5 4 32 32 H 1.09004 * 109.47370 * 29.99829 * 9 8 7 33 33 H 1.08994 * 109.47299 * 149.99887 * 9 8 7 34 34 H 0.97007 * 120.00092 * 359.97438 * 10 9 8 35 35 H 1.08001 * 120.70625 * 359.97397 * 12 11 10 36 36 H 0.97001 * 119.99772 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2979 2.3842 0.0005 5 6 1.9715 3.5946 0.0011 6 6 3.3542 3.5976 0.0016 7 7 4.0334 2.4676 0.0011 8 6 3.4305 1.2951 0.0005 9 6 4.2542 0.0331 0.0006 10 7 4.5216 -0.3755 -1.3806 11 6 5.2666 -1.5158 -1.6338 12 6 5.7682 -2.2850 -0.5765 13 6 6.5093 -3.4203 -0.8743 14 17 7.1531 -4.4066 0.4011 15 7 6.7198 -3.7428 -2.1390 16 6 6.2295 -2.9926 -3.1273 17 6 6.4754 -3.3703 -4.4694 18 1 6.0847 -2.7719 -5.2791 19 6 7.2263 -4.5195 -4.7472 20 7 7.6995 -5.2435 -3.7674 21 14 7.5514 -5.0175 -6.5180 22 1 8.2895 -3.9307 -7.2102 23 1 8.3631 -6.2607 -6.5416 24 1 6.2595 -5.2571 -7.2099 25 7 5.5093 -1.8967 -2.8801 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2184 2.3519 0.0002 30 1 1.4232 4.5251 0.0011 31 1 3.8849 4.5382 -0.0025 32 1 5.1980 0.2151 0.5148 33 1 3.7074 -0.7577 0.5140 34 1 4.1771 0.1523 -2.1180 35 1 5.5823 -2.0011 0.4487 36 1 8.2193 -6.0396 -3.9597 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169204246.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:48 Heat of formation + Delta-G solvation = 26.472465 kcal Electronic energy + Delta-G solvation = -23288.684160 eV Core-core repulsion = 19605.677615 eV Total energy + Delta-G solvation = -3683.006545 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.078 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.79426 -40.85855 -39.15486 -37.53629 -37.21368 -35.38571 -33.74262 -32.94222 -32.18895 -30.83436 -28.37657 -28.33361 -27.38970 -24.06951 -23.86791 -23.65805 -22.71054 -19.83998 -19.14295 -18.44104 -18.16931 -17.98917 -16.93482 -16.84948 -16.55031 -15.86143 -15.66584 -15.56943 -15.31708 -15.23651 -14.74494 -14.58911 -14.44390 -14.29500 -13.86886 -13.20724 -13.09300 -13.06815 -12.76049 -12.74262 -12.37747 -12.31101 -12.02244 -11.95343 -11.65715 -10.92929 -10.92478 -10.75792 -10.58024 -10.12295 -9.48235 -9.39267 -8.83309 -8.42139 -6.78816 -0.01846 0.26169 0.65049 1.13437 1.13947 1.43080 1.56909 1.57704 2.19961 2.22537 2.32085 2.76304 2.89187 3.22334 3.57940 3.79028 3.88101 4.05024 4.18269 4.24825 4.31760 4.36363 4.42631 4.53969 4.57313 4.62607 4.70233 4.75322 4.96693 5.02454 5.09712 5.12310 5.32054 5.47706 5.98445 6.16394 6.21781 6.46233 6.67795 6.72468 6.96943 7.20366 8.20270 8.38274 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.015115 B = 0.003248 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.050479 B = 8617.884907 C = 9414.097845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.327 6.327 3 C 0.090 3.910 4 C -0.165 4.165 5 C -0.110 4.110 6 C 0.047 3.953 7 N -0.463 5.463 8 C 0.057 3.943 9 C 0.200 3.800 10 N -0.705 5.705 11 C 0.453 3.547 12 C -0.399 4.399 13 C 0.249 3.751 14 Cl -0.055 7.055 15 N -0.561 5.561 16 C 0.409 3.591 17 C -0.429 4.429 18 H 0.095 0.905 19 C 0.024 3.976 20 N -0.739 5.739 21 Si 1.002 2.998 22 H -0.258 1.258 23 H -0.263 1.263 24 H -0.257 1.257 25 N -0.666 5.666 26 H 0.069 0.931 27 H 0.110 0.890 28 H 0.077 0.923 29 H 0.173 0.827 30 H 0.180 0.820 31 H 0.185 0.815 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.397 0.603 35 H 0.136 0.864 36 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.201 13.674 7.554 21.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.239 6.239 3 C 0.041 3.959 4 C -0.192 4.192 5 C -0.130 4.130 6 C -0.111 4.111 7 N -0.173 5.173 8 C -0.081 4.081 9 C 0.076 3.924 10 N -0.341 5.341 11 C 0.205 3.795 12 C -0.432 4.432 13 C 0.070 3.930 14 Cl -0.027 7.027 15 N -0.284 5.284 16 C 0.172 3.828 17 C -0.464 4.464 18 H 0.113 0.887 19 C -0.200 4.200 20 N -0.360 5.360 21 Si 0.821 3.179 22 H -0.182 1.182 23 H -0.187 1.187 24 H -0.181 1.181 25 N -0.398 5.398 26 H 0.087 0.913 27 H 0.128 0.872 28 H 0.096 0.904 29 H 0.190 0.810 30 H 0.198 0.802 31 H 0.201 0.799 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.232 0.768 35 H 0.154 0.846 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.861 12.905 6.984 19.512 hybrid contribution -0.963 0.027 0.329 1.018 sum -13.825 12.932 7.314 20.294 Atomic orbital electron populations 1.23424 0.76026 1.05655 1.02781 1.86191 1.23820 1.26032 1.87880 1.20050 0.92747 0.86448 0.96672 1.22121 1.02369 0.91186 1.03500 1.22490 0.95113 0.99604 0.95766 1.23248 0.92804 0.96259 0.98769 1.67471 1.41494 0.98277 1.10016 1.20380 0.88953 0.93518 1.05286 1.19808 0.98138 0.91717 0.82732 1.44012 1.57394 1.25259 1.07386 1.18395 0.86186 0.85863 0.89025 1.21153 1.19283 1.03159 0.99610 1.21861 0.91618 0.89160 0.90377 1.98279 1.85773 1.71273 1.47421 1.68588 1.28512 1.33847 0.97483 1.19880 0.85897 0.83508 0.93495 1.19670 1.28445 1.08315 0.89984 0.88731 1.27099 0.93429 0.94876 1.04595 1.70226 1.19903 1.10461 1.35453 0.84975 0.79509 0.78488 0.74961 1.18165 1.18727 1.18081 1.68244 1.28665 1.22408 1.20459 0.91271 0.87162 0.90435 0.81006 0.80246 0.79857 0.91333 0.90547 0.76820 0.84626 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.83 113.37 1.11 1.32 16 2 O -0.33 -7.76 9.55 -92.56 -0.88 -8.64 16 3 C 0.09 2.08 6.67 22.60 0.15 2.23 16 4 C -0.17 -2.52 9.14 22.56 0.21 -2.31 16 5 C -0.11 -1.42 10.11 22.34 0.23 -1.19 16 6 C 0.05 0.86 11.18 84.70 0.95 1.81 16 7 N -0.46 -12.46 10.27 -183.49 -1.88 -14.34 16 8 C 0.06 1.59 6.16 42.67 0.26 1.86 16 9 C 0.20 6.60 4.99 85.64 0.43 7.03 16 10 N -0.71 -28.02 5.70 -348.28 -1.99 -30.00 16 11 C 0.45 22.26 7.71 133.40 1.03 23.29 16 12 C -0.40 -19.20 9.23 22.84 0.21 -18.99 16 13 C 0.25 13.04 7.33 84.77 0.62 13.66 16 14 Cl -0.06 -2.44 29.15 -2.72 -0.08 -2.52 16 15 N -0.56 -33.18 7.86 -185.03 -1.45 -34.63 16 16 C 0.41 24.47 7.37 135.16 1.00 25.47 16 17 C -0.43 -24.45 9.37 23.53 0.22 -24.23 16 18 H 0.09 5.15 7.85 -2.91 -0.02 5.13 16 19 C 0.02 1.27 5.50 85.30 0.47 1.74 16 20 N -0.74 -40.36 11.42 21.84 0.25 -40.11 16 21 Si 1.00 38.40 29.56 68.60 2.03 40.43 16 22 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 23 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 24 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 25 N -0.67 -37.29 10.39 -191.55 -1.99 -39.28 16 26 H 0.07 0.73 7.70 -2.39 -0.02 0.71 16 27 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.08 0.66 7.70 -2.39 -0.02 0.64 16 29 H 0.17 1.42 6.45 -2.91 -0.02 1.40 16 30 H 0.18 0.79 8.06 -2.91 -0.02 0.76 16 31 H 0.18 2.22 8.06 -2.91 -0.02 2.19 16 32 H 0.07 2.31 7.97 -2.38 -0.02 2.29 16 33 H 0.08 2.50 7.35 -2.39 -0.02 2.48 16 34 H 0.40 15.51 8.59 -92.70 -0.80 14.71 16 35 H 0.14 5.68 6.85 -2.91 -0.02 5.66 16 36 H 0.29 13.96 8.29 -92.71 -0.77 13.19 16 Total: -1.00 -74.54 332.80 1.23 -73.30 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.35 Total: 24.11 kcal Atomic # 6 Polarization: 24.80 SS G_CDS: 6.88 Total: 31.68 kcal Atomic # 7 Polarization: -151.30 SS G_CDS: -7.06 Total: -158.36 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.88 Total: -8.64 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Atomic # 17 Polarization: -2.44 SS G_CDS: -0.08 Total: -2.52 kcal Total: -74.54 1.23 -73.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169204246.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.777 kcal (2) G-P(sol) polarization free energy of solvation -74.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds