Wall clock time and date at job start Tue Mar 31 2020 12:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35614 * 116.99986 * 2 1 4 4 C 1.39155 * 120.50711 * 0.02562 * 3 2 1 5 5 C 1.38308 * 118.63238 * 179.72772 * 4 3 2 6 6 C 1.39947 * 119.59146 * 0.47336 * 5 4 3 7 7 N 1.38904 * 119.49304 * 179.79172 * 6 5 4 8 8 C 1.46494 * 120.00127 * 359.72483 * 7 6 5 9 9 C 1.50701 * 109.47102 * 180.02562 * 8 7 6 10 10 N 1.31804 * 119.11645 * 90.00416 * 9 8 7 11 11 C 1.32354 * 120.85314 * 179.72118 * 10 9 8 12 12 C 1.38520 * 119.12668 * 359.97438 * 11 10 9 13 13 C 1.38776 * 118.38228 * 359.97438 * 12 11 10 14 14 Cl 1.73604 * 120.46300 * 179.97438 * 13 12 11 15 15 N 1.31780 * 119.11484 * 269.73024 * 9 8 7 16 16 N 1.31867 * 121.00772 * 359.51220 * 6 5 4 17 17 C 1.33827 * 121.47261 * 0.25923 * 16 6 5 18 18 C 1.40918 * 119.84699 * 180.02562 * 17 16 6 19 19 H 1.07997 * 120.00014 * 180.02562 * 18 17 16 20 20 C 1.40027 * 120.00014 * 359.97438 * 18 17 16 21 21 N 1.30777 * 119.99993 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99813 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47334 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46939 * 120.00203 * 22 20 18 25 25 H 1.48503 * 109.46830 * 239.99932 * 22 20 18 26 26 H 1.09003 * 109.46585 * 59.99729 * 1 2 3 27 27 H 1.08999 * 109.47088 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.46877 * 300.00196 * 1 2 3 29 29 H 1.08007 * 120.68048 * 359.97438 * 4 3 2 30 30 H 1.07997 * 120.20441 * 180.26304 * 5 4 3 31 31 H 0.96995 * 119.99828 * 179.72942 * 7 6 5 32 32 H 1.09003 * 109.46992 * 60.00490 * 8 7 6 33 33 H 1.09000 * 109.47544 * 300.00060 * 8 7 6 34 34 H 1.08004 * 120.44081 * 179.97438 * 11 10 9 35 35 H 1.07997 * 120.80770 * 180.02562 * 12 11 10 36 36 H 0.96997 * 120.00083 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0448 1.2083 0.0000 4 6 1.2972 2.3820 0.0005 5 6 1.9651 3.5932 0.0063 6 6 3.3644 3.6107 0.0013 7 7 4.0331 4.8282 0.0027 8 6 3.2737 6.0810 0.0032 9 6 4.2283 7.2471 0.0041 10 7 4.6348 7.7440 -1.1470 11 6 5.4685 8.7712 -1.1863 12 6 5.9135 9.3244 0.0032 13 6 5.4630 8.7751 1.1953 14 17 5.9867 9.4255 2.7174 15 7 4.6300 7.7460 1.1558 16 7 4.0579 2.4891 0.0009 17 6 3.4545 1.2946 -0.0001 18 6 4.2292 0.1175 0.0000 19 1 3.7448 -0.8478 -0.0011 20 6 5.6271 0.1994 0.0005 21 7 6.2136 1.3682 0.0014 22 14 6.6540 -1.3610 -0.0001 23 1 5.7566 -2.5442 -0.0017 24 1 7.5113 -1.3888 -1.2123 25 1 7.5105 -1.3903 1.2127 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 0.2177 2.3479 0.0005 30 1 1.4101 4.5196 0.0111 31 1 5.0028 4.8489 0.0033 32 1 2.6454 6.1246 0.8929 33 1 2.6465 6.1261 -0.8871 34 1 5.7976 9.1729 -2.1333 35 1 6.5937 10.1632 0.0028 36 1 7.1819 1.4249 0.0022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170545116.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:44 Heat of formation + Delta-G solvation = 36.692255 kcal Electronic energy + Delta-G solvation = -23208.383781 eV Core-core repulsion = 19525.820399 eV Total energy + Delta-G solvation = -3682.563382 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.078 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.29264 -40.60627 -38.68696 -38.03116 -36.64780 -35.18132 -34.82626 -33.21661 -32.16456 -30.70052 -28.21193 -27.80794 -26.65321 -25.67387 -24.14559 -23.18670 -22.14160 -19.36158 -19.09575 -18.87545 -18.17942 -17.91647 -17.02167 -16.66323 -16.33838 -16.20205 -16.19196 -15.58768 -15.32363 -14.99012 -14.84214 -14.52576 -14.18931 -13.76101 -13.68979 -13.43820 -13.26031 -12.87792 -12.86010 -12.64957 -12.49220 -12.05279 -11.99805 -11.96180 -11.73271 -11.54793 -11.28817 -10.66367 -10.57699 -10.16741 -9.90852 -9.57372 -8.25151 -8.11316 -6.31525 -0.50530 -0.20296 0.44247 0.99777 1.28467 1.42067 1.56365 1.58002 2.18260 2.27128 2.59125 2.86146 2.91724 3.04260 3.09168 3.49417 3.85933 3.97596 4.14771 4.24765 4.28977 4.46863 4.50524 4.55293 4.57896 4.67250 4.78723 4.89422 4.93388 5.06027 5.32820 5.50552 5.66305 5.70098 5.85270 6.26211 6.40798 6.66632 6.77651 6.81066 6.93013 7.33213 8.28894 8.49800 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.013181 B = 0.003279 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.800632 B = 8536.244822 C = 9837.559466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.337 6.337 3 C -0.095 4.095 4 C -0.111 4.111 5 C -0.339 4.339 6 C 0.378 3.622 7 N -0.726 5.726 8 C 0.215 3.785 9 C 0.321 3.679 10 N -0.518 5.518 11 C 0.164 3.836 12 C -0.188 4.188 13 C 0.198 3.802 14 Cl -0.008 7.008 15 N -0.527 5.527 16 N -0.543 5.543 17 C 0.253 3.747 18 C -0.450 4.450 19 H 0.085 0.915 20 C 0.025 3.975 21 N -0.751 5.751 22 Si 0.985 3.015 23 H -0.257 1.257 24 H -0.265 1.265 25 H -0.266 1.266 26 H 0.048 0.952 27 H 0.110 0.890 28 H 0.048 0.952 29 H 0.135 0.865 30 H 0.124 0.876 31 H 0.389 0.611 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.226 0.774 35 H 0.201 0.799 36 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.307 16.135 -0.924 16.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.252 6.252 3 C -0.143 4.143 4 C -0.135 4.135 5 C -0.365 4.365 6 C 0.140 3.860 7 N -0.363 5.363 8 C 0.089 3.911 9 C 0.053 3.947 10 N -0.233 5.233 11 C -0.001 4.001 12 C -0.210 4.210 13 C 0.025 3.975 14 Cl 0.021 6.979 15 N -0.244 5.244 16 N -0.266 5.266 17 C 0.125 3.875 18 C -0.483 4.483 19 H 0.103 0.897 20 C -0.196 4.196 21 N -0.374 5.374 22 Si 0.805 3.195 23 H -0.180 1.180 24 H -0.190 1.190 25 H -0.191 1.191 26 H 0.067 0.933 27 H 0.129 0.871 28 H 0.066 0.934 29 H 0.153 0.847 30 H 0.142 0.858 31 H 0.222 0.778 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.242 0.758 35 H 0.218 0.782 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.082 15.519 -0.773 15.539 hybrid contribution 0.227 0.337 0.428 0.590 sum 0.309 15.856 -0.345 15.863 Atomic orbital electron populations 1.23035 0.79058 1.04009 1.00655 1.85858 1.21096 1.27221 1.90981 1.20080 0.93171 0.84665 1.16402 1.21046 0.99020 0.91461 1.01987 1.20719 0.92267 0.97808 1.25722 1.18737 0.88679 0.86672 0.91919 1.43824 1.07485 1.00988 1.84010 1.19760 0.90549 0.77574 1.03262 1.22877 0.94090 0.95123 0.82656 1.68326 1.13103 1.12393 1.29444 1.24215 0.87725 0.87748 1.00453 1.23208 1.02972 1.04038 0.90792 1.22490 0.93149 0.91808 0.90004 1.98439 1.87299 1.82580 1.29590 1.67582 1.13289 1.11601 1.31935 1.68264 1.36259 0.95774 1.26327 1.18186 0.86834 0.91443 0.91059 1.19771 0.91873 0.93002 1.43633 0.89693 1.26941 0.99324 1.00652 0.92717 1.70266 1.10664 1.26660 1.29806 0.85124 0.77809 0.77767 0.78772 1.18034 1.18961 1.19099 0.93302 0.87133 0.93382 0.84716 0.85802 0.77806 0.89991 0.89153 0.75791 0.78176 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 9.83 113.37 1.11 2.03 16 2 O -0.34 -16.03 9.61 -89.26 -0.86 -16.89 16 3 C -0.10 -4.99 6.74 23.23 0.16 -4.83 16 4 C -0.11 -5.05 9.12 22.51 0.21 -4.85 16 5 C -0.34 -15.40 9.33 22.70 0.21 -15.18 16 6 C 0.38 18.96 7.65 133.45 1.02 19.98 16 7 N -0.73 -30.78 5.72 -348.58 -1.99 -32.78 16 8 C 0.21 7.11 5.31 85.63 0.45 7.57 16 9 C 0.32 9.55 7.01 138.75 0.97 10.52 16 10 N -0.52 -13.38 10.33 -187.89 -1.94 -15.33 16 11 C 0.16 2.66 11.30 84.68 0.96 3.62 16 12 C -0.19 -2.80 9.98 22.47 0.22 -2.57 16 13 C 0.20 4.48 7.34 84.73 0.62 5.11 16 14 Cl -0.01 -0.15 29.16 -2.72 -0.08 -0.23 16 15 N -0.53 -15.54 10.33 -178.75 -1.85 -17.39 16 16 N -0.54 -31.41 7.88 -186.17 -1.47 -32.87 16 17 C 0.25 14.90 6.56 40.23 0.26 15.16 16 18 C -0.45 -26.10 8.94 23.36 0.21 -25.89 16 19 H 0.08 4.82 7.31 -2.91 -0.02 4.80 16 20 C 0.02 1.34 5.50 85.28 0.47 1.81 16 21 N -0.75 -41.86 11.45 21.84 0.25 -41.61 16 22 Si 0.98 40.27 29.56 68.60 2.03 42.30 16 23 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 24 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 25 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 26 H 0.05 1.49 7.69 -2.39 -0.02 1.47 16 27 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 28 H 0.05 1.47 7.69 -2.39 -0.02 1.46 16 29 H 0.14 5.07 6.43 -2.91 -0.02 5.05 16 30 H 0.12 4.75 6.67 -2.91 -0.02 4.73 16 31 H 0.39 17.37 8.58 -92.71 -0.80 16.58 16 32 H 0.08 2.66 7.90 -2.39 -0.02 2.64 16 33 H 0.09 2.82 7.93 -2.39 -0.02 2.80 16 34 H 0.23 1.46 8.06 -2.91 -0.02 1.44 16 35 H 0.20 1.20 8.06 -2.91 -0.02 1.18 16 36 H 0.28 13.87 8.29 -92.71 -0.77 13.10 16 Total: -1.00 -74.39 332.71 1.33 -73.06 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: 0.36 Total: 29.27 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 6.88 Total: 12.47 kcal Atomic # 7 Polarization: -132.98 SS G_CDS: -7.00 Total: -139.98 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.86 Total: -16.89 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.30 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -0.08 Total: -0.23 kcal Total: -74.39 1.33 -73.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170545116.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.749 kcal (2) G-P(sol) polarization free energy of solvation -74.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds