Wall clock time and date at job start Tue Mar 31 2020 12:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47071 * 2 1 4 4 N 1.46499 * 109.46957 * 180.02562 * 3 2 1 5 5 C 1.46502 * 119.99909 * 275.00349 * 4 3 2 6 6 C 1.50699 * 109.47136 * 274.99934 * 5 4 3 7 7 H 1.08004 * 120.00206 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00174 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00038 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 120.00040 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.46991 * 90.00331 * 10 8 6 12 12 H 1.48505 * 109.47292 * 210.00303 * 10 8 6 13 13 H 1.48498 * 109.47189 * 330.00192 * 10 8 6 14 14 S 1.65597 * 120.00540 * 95.00103 * 4 3 2 15 15 O 1.42100 * 106.40812 * 156.45692 * 14 4 3 16 16 O 1.42102 * 106.39708 * 23.54019 * 14 4 3 17 17 C 1.76199 * 107.21857 * 270.00321 * 14 4 3 18 18 N 1.31856 * 119.61009 * 330.01324 * 17 14 4 19 19 C 1.31833 * 121.77727 * 179.97438 * 18 17 14 20 20 C 1.38470 * 120.78046 * 0.02562 * 19 18 17 21 21 F 1.35105 * 120.43091 * 180.02562 * 20 19 18 22 22 C 1.38795 * 119.13991 * 359.97438 * 20 19 18 23 23 C 1.38435 * 119.60726 * 149.99532 * 17 14 4 24 24 F 1.35106 * 120.43164 * 359.74979 * 23 17 14 25 25 H 1.08999 * 109.46961 * 299.99931 * 1 2 3 26 26 H 1.09006 * 109.46976 * 59.99842 * 1 2 3 27 27 H 1.09000 * 109.47397 * 179.97438 * 1 2 3 28 28 H 1.09010 * 109.47330 * 240.00324 * 2 1 3 29 29 H 1.08999 * 109.47135 * 120.00518 * 2 1 3 30 30 H 1.08995 * 109.46754 * 60.00472 * 3 2 1 31 31 H 1.08992 * 109.47202 * 300.00083 * 3 2 1 32 32 H 1.08995 * 109.47466 * 35.00164 * 5 4 3 33 33 H 1.09000 * 109.47466 * 155.00381 * 5 4 3 34 34 H 0.96994 * 120.00293 * 179.97438 * 9 8 6 35 35 H 1.07997 * 119.60916 * 179.97438 * 19 18 17 36 36 H 1.08004 * 120.81081 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.3317 1.2630 6 6 4.3822 2.6982 1.8816 7 1 3.9695 3.5630 1.3832 8 6 5.0419 2.8448 3.0834 9 7 5.1673 4.0374 3.6235 10 14 5.7563 1.3494 3.9452 11 1 7.1531 1.1353 3.4886 12 1 5.7441 1.5713 5.4135 13 1 4.9398 0.1528 3.6186 14 16 4.3325 1.5677 -1.4295 15 8 5.6155 2.0859 -1.1063 16 8 3.4504 2.1950 -2.3503 17 6 4.5930 -0.0694 -2.0266 18 7 4.7116 -1.0643 -1.1695 19 6 4.9068 -2.3054 -1.5690 20 6 4.9955 -2.6103 -2.9168 21 9 5.1951 -3.8847 -3.3185 22 6 4.8755 -1.5898 -3.8499 23 6 4.6703 -0.2959 -3.3901 24 9 4.5423 0.7280 -4.2622 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 3.6910 0.6802 1.9445 33 1 5.2262 0.9123 1.0742 34 1 5.6311 4.1405 4.4692 35 1 4.9995 -3.0935 -0.8364 36 1 4.9400 -1.7971 -4.9079 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190165507.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:38 Heat of formation + Delta-G solvation = -118.739059 kcal Electronic energy + Delta-G solvation = -25786.894679 eV Core-core repulsion = 21648.945810 eV Total energy + Delta-G solvation = -4137.948869 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.079 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.68130 -49.60615 -40.29776 -36.90010 -36.54070 -35.45766 -33.14345 -32.90414 -31.90414 -31.31988 -28.00094 -25.22821 -24.96355 -24.16964 -22.19213 -21.12765 -19.29862 -18.76021 -18.58159 -17.75557 -16.94207 -16.80048 -16.62150 -16.41869 -15.96641 -15.68362 -15.27521 -14.86117 -14.54160 -14.33708 -13.91988 -13.78336 -13.62995 -13.41442 -13.15995 -12.58169 -12.28265 -12.05446 -11.77685 -11.71779 -11.58783 -11.48816 -11.32377 -11.10983 -10.80420 -10.44941 -10.40453 -10.31819 -10.25212 -10.10575 -9.62529 -9.52609 -8.56534 -8.16991 -6.05941 -4.05288 -0.10232 0.36579 0.64644 2.73038 3.08328 3.12675 3.30967 3.36649 3.38212 3.48987 3.75744 4.04900 4.13614 4.36678 4.41359 4.68569 4.92146 4.94816 5.13161 5.23196 5.26020 5.27400 5.43238 5.62687 5.87091 5.95535 6.02124 6.09293 6.22052 6.52592 6.53892 6.81571 6.99060 7.08374 7.33417 7.59930 8.50260 8.98542 9.53059 11.07415 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.005257 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.454008 B = 5325.314662 C = 5552.583378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.118 3.882 4 N -0.954 5.954 5 C 0.229 3.771 6 C -0.533 4.533 7 H 0.079 0.921 8 C 0.075 3.925 9 N -0.895 5.895 10 Si 0.868 3.132 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.262 1.262 14 S 2.686 3.314 15 O -0.918 6.918 16 O -0.950 6.950 17 C -0.479 4.479 18 N -0.334 5.334 19 C 0.050 3.950 20 C 0.124 3.876 21 F -0.114 7.114 22 C -0.164 4.164 23 C 0.163 3.837 24 F -0.099 7.099 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.039 0.961 33 H 0.036 0.964 34 H 0.265 0.735 35 H 0.186 0.814 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.605 -15.321 -12.588 20.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.183 4.183 3 C -0.008 4.008 4 N -0.793 5.793 5 C 0.106 3.894 6 C -0.572 4.572 7 H 0.098 0.902 8 C -0.128 4.128 9 N -0.533 5.533 10 Si 0.695 3.305 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.186 1.186 14 S 2.765 3.235 15 O -0.908 6.908 16 O -0.939 6.939 17 C -0.693 4.693 18 N -0.042 5.042 19 C -0.113 4.113 20 C 0.102 3.898 21 F -0.093 7.093 22 C -0.191 4.191 23 C 0.140 3.860 24 F -0.077 7.077 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.115 0.885 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.203 0.797 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.285 -14.327 -12.019 19.185 hybrid contribution 0.603 -1.919 -0.709 2.133 sum -3.682 -16.246 -12.728 20.965 Atomic orbital electron populations 1.21698 0.95502 1.01336 1.02136 1.21993 0.95844 0.98291 1.02190 1.21411 0.78828 0.95996 1.04574 1.56970 1.14093 1.87242 1.21037 1.19528 0.91210 0.98440 0.80217 1.21384 1.36900 0.92936 1.05971 0.90248 1.24825 0.95323 0.95715 0.96902 1.69890 1.42560 1.21960 1.18904 0.86969 0.80564 0.83851 0.79110 1.19810 1.21048 1.18648 1.02938 0.74587 0.72731 0.73225 1.93669 1.40048 1.74210 1.82853 1.93583 1.65912 1.71079 1.63360 1.34947 1.12652 1.25114 0.96594 1.67972 1.03325 0.98215 1.34694 1.23400 0.99458 0.95589 0.92878 1.18714 0.97776 0.79536 0.93779 1.91597 1.91465 1.34935 1.91253 1.21701 1.04117 0.90736 1.02582 1.17944 0.95896 0.85265 0.86891 1.91697 1.91920 1.56345 1.67745 0.92166 0.92717 0.93044 0.93209 0.90904 0.88550 0.89959 0.94352 0.94661 0.92530 0.79674 0.81252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.14 -1.96 6.26 -26.73 -0.17 -2.12 16 3 C 0.12 1.95 5.68 -4.04 -0.02 1.93 16 4 N -0.95 -19.00 2.71 -115.67 -0.31 -19.31 16 5 C 0.23 5.26 4.17 -5.19 -0.02 5.24 16 6 C -0.53 -14.82 9.94 -34.44 -0.34 -15.16 16 7 H 0.08 2.41 8.06 -52.48 -0.42 1.98 16 8 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 9 N -0.89 -27.16 13.96 55.43 0.77 -26.39 16 10 Si 0.87 20.81 27.47 -169.99 -4.67 16.14 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 14 S 2.69 53.38 5.46 -107.50 -0.59 52.79 16 15 O -0.92 -21.69 16.99 -57.17 -0.97 -22.66 16 16 O -0.95 -19.08 15.31 -57.17 -0.88 -19.95 16 17 C -0.48 -7.67 6.77 -17.47 -0.12 -7.79 16 18 N -0.33 -4.90 10.23 -12.34 -0.13 -5.03 16 19 C 0.05 0.54 11.17 -17.47 -0.20 0.35 16 20 C 0.12 1.22 7.34 -39.29 -0.29 0.93 16 21 F -0.11 -1.01 17.28 2.25 0.04 -0.97 16 22 C -0.16 -1.67 10.15 -39.15 -0.40 -2.07 16 23 C 0.16 2.25 7.22 -39.29 -0.28 1.96 16 24 F -0.10 -1.44 15.79 2.25 0.04 -1.40 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.10 1.62 8.11 -51.93 -0.42 1.20 16 31 H 0.08 1.29 6.91 -51.93 -0.36 0.93 16 32 H 0.04 0.83 7.17 -51.93 -0.37 0.46 16 33 H 0.04 0.83 7.04 -51.93 -0.37 0.46 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.19 1.40 8.06 -52.49 -0.42 0.97 16 36 H 0.17 1.17 8.06 -52.48 -0.42 0.74 16 LS Contribution 332.45 15.07 5.01 5.01 Total: -1.00 -33.12 332.45 -7.32 -40.44 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -4.07 Total: -2.69 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -1.57 Total: -15.97 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: 0.33 Total: -50.73 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -1.85 Total: -42.62 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.07 Total: -2.37 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.14 kcal Atomic # 16 Polarization: 53.38 SS G_CDS: -0.59 Total: 52.79 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.12 -7.32 -40.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190165507.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.298 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds