Wall clock time and date at job start Tue Mar 31 2020 12:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.31566 * 119.99638 * 2 1 4 4 C 1.42347 * 120.94090 * 353.84994 * 3 2 1 5 5 N 1.40165 * 120.73639 * 0.04898 * 4 3 2 6 6 C 1.36296 * 118.53020 * 180.02562 * 4 3 2 7 7 Cl 1.73599 * 119.81950 * 179.97438 * 6 4 3 8 8 N 1.33928 * 120.36289 * 359.97438 * 6 4 3 9 9 C 1.30277 * 122.07703 * 359.77586 * 8 6 4 10 10 N 1.36124 * 121.50149 * 0.49067 * 9 8 6 11 11 C 1.40011 * 120.29552 * 179.77005 * 10 9 8 12 12 C 1.38944 * 120.00181 * 129.99814 * 11 10 9 13 13 C 1.37979 * 120.00192 * 180.27348 * 12 11 10 14 14 C 1.38933 * 119.99678 * 359.45595 * 13 12 11 15 15 O 1.35759 * 119.99191 * 180.29327 * 14 13 12 16 16 C 1.34814 * 117.00787 * 354.50040 * 15 14 13 17 17 H 1.08009 * 119.99626 * 5.11375 * 16 15 14 18 18 C 1.38620 * 120.00389 * 185.11473 * 16 15 14 19 19 N 1.31574 * 119.99977 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 120.00170 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46580 * 90.00113 * 20 18 16 22 22 H 1.48489 * 109.47384 * 210.00127 * 20 18 16 23 23 H 1.48497 * 109.46947 * 330.00699 * 20 18 16 24 24 C 1.38924 * 120.00609 * 0.27629 * 14 13 12 25 25 C 1.37979 * 119.99794 * 359.97438 * 24 14 13 26 26 H 1.09002 * 109.46991 * 174.52326 * 1 2 3 27 27 H 1.08998 * 109.47375 * 294.52266 * 1 2 3 28 28 H 1.09001 * 109.47120 * 54.52452 * 1 2 3 29 29 H 0.97004 * 120.00164 * 55.68344 * 5 4 3 30 30 H 0.97003 * 120.00009 * 235.68756 * 5 4 3 31 31 H 1.07999 * 119.24755 * 180.27309 * 9 8 6 32 32 H 1.08004 * 120.00017 * 0.03254 * 12 11 10 33 33 H 1.08000 * 120.00366 * 179.72905 * 13 12 11 34 34 H 0.97010 * 119.99819 * 179.97438 * 19 18 16 35 35 H 1.08002 * 119.99895 * 180.02562 * 24 14 13 36 36 H 1.08007 * 119.99607 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1227 1.1394 0.0000 4 6 1.4373 2.3802 -0.1308 5 7 0.0423 2.4176 -0.2620 6 6 2.1675 3.5310 -0.1252 7 17 1.3660 5.0627 -0.2832 8 7 3.5001 3.4866 0.0016 9 6 4.1460 2.3623 0.1273 10 7 3.4975 1.1655 0.1266 11 6 4.2175 -0.0281 0.2586 12 6 3.8267 -0.9750 1.1973 13 6 4.5395 -2.1488 1.3312 14 6 5.6414 -2.3887 0.5197 15 8 6.3392 -3.5462 0.6476 16 6 5.9820 -4.3683 1.6546 17 1 5.1215 -4.1338 2.2637 18 6 6.7192 -5.5145 1.9083 19 7 6.3703 -6.3171 2.8908 20 14 8.2072 -5.9205 0.8544 21 1 9.4199 -5.3073 1.4532 22 1 8.3792 -7.3939 0.7873 23 1 8.0053 -5.3827 -0.5150 24 6 6.0289 -1.4444 -0.4227 25 6 5.3192 -0.2684 -0.5532 26 1 -0.3633 -1.0230 -0.0981 27 1 -0.3634 0.4265 0.9349 28 1 -0.3633 0.5964 -0.8369 29 1 -0.5192 1.9953 0.4068 30 1 -0.3616 2.8658 -1.0215 31 1 5.2209 2.3800 0.2309 32 1 2.9672 -0.7906 1.8248 33 1 4.2384 -2.8829 2.0639 34 1 6.8860 -7.1194 3.0681 35 1 6.8853 -1.6313 -1.0538 36 1 5.6203 0.4655 -1.2861 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212606143.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:49 Heat of formation + Delta-G solvation = 100.734849 kcal Electronic energy + Delta-G solvation = -23642.096265 eV Core-core repulsion = 19962.309979 eV Total energy + Delta-G solvation = -3679.786287 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.078 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.42693 -39.26392 -37.53628 -36.78185 -36.51762 -34.73698 -32.62810 -32.37480 -30.59472 -29.85153 -28.56139 -26.01433 -25.52612 -24.04966 -22.87554 -21.94868 -21.11357 -18.59341 -18.16983 -17.91126 -17.35351 -17.15419 -16.50366 -15.95516 -15.40323 -14.72509 -14.52604 -14.21222 -14.13712 -13.98643 -13.72478 -13.65686 -12.99443 -12.86542 -12.62728 -12.39188 -12.25977 -11.93709 -11.60535 -11.42837 -11.10278 -10.93932 -10.89147 -10.48039 -10.29280 -10.28061 -9.66370 -9.43739 -8.97700 -8.66683 -8.46629 -7.62554 -7.03847 -6.54514 -4.20625 0.49658 1.71850 1.74002 1.87707 1.97699 2.43778 3.14718 3.18632 3.32250 3.34905 3.66775 4.11543 4.13106 4.28662 4.58341 4.67099 4.88082 4.97214 5.22357 5.32621 5.36111 5.41179 5.51044 5.62532 5.85419 5.90424 5.97020 6.16825 6.34965 6.48251 6.61460 6.87722 7.03086 7.09480 7.25928 7.39086 7.54098 7.64378 7.70131 7.88217 8.01684 8.79308 9.38101 10.52184 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.028851 B = 0.002876 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.255609 B = 9732.030231 C =10375.201478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.577 5.577 3 C 0.381 3.619 4 C 0.062 3.938 5 N -0.885 5.885 6 C 0.149 3.851 7 Cl -0.036 7.036 8 N -0.545 5.545 9 C 0.390 3.610 10 N -0.434 5.434 11 C 0.008 3.992 12 C -0.022 4.022 13 C -0.213 4.213 14 C 0.168 3.832 15 O -0.207 6.207 16 C -0.391 4.391 17 H 0.109 0.891 18 C 0.066 3.934 19 N -0.872 5.872 20 Si 0.906 3.094 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.258 1.258 24 C -0.182 4.182 25 C -0.070 4.070 26 H 0.068 0.932 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.401 0.599 30 H 0.395 0.605 31 H 0.212 0.788 32 H 0.117 0.883 33 H 0.140 0.860 34 H 0.282 0.718 35 H 0.126 0.874 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.205 17.463 -5.892 20.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.302 5.302 3 C 0.110 3.890 4 C -0.048 4.048 5 N -0.442 5.442 6 C 0.000 4.000 7 Cl -0.007 7.007 8 N -0.268 5.268 9 C 0.105 3.895 10 N -0.131 5.131 11 C -0.083 4.083 12 C -0.042 4.042 13 C -0.233 4.233 14 C 0.114 3.886 15 O -0.110 6.110 16 C -0.466 4.466 17 H 0.127 0.873 18 C -0.139 4.139 19 N -0.508 5.508 20 Si 0.731 3.269 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.182 1.182 24 C -0.202 4.202 25 C -0.090 4.090 26 H 0.087 0.913 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.236 0.764 30 H 0.226 0.774 31 H 0.228 0.772 32 H 0.135 0.865 33 H 0.157 0.843 34 H 0.092 0.908 35 H 0.144 0.856 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.643 16.987 -5.893 19.537 hybrid contribution -0.846 -0.102 -0.433 0.956 sum -8.488 16.885 -6.327 19.929 Atomic orbital electron populations 1.22515 0.87559 1.01963 1.00000 1.72647 1.08881 1.22101 1.26561 1.19294 0.84115 0.90231 0.95352 1.18288 0.87009 0.89859 1.09631 1.42419 1.01062 1.69831 1.30934 1.21528 0.89817 0.86329 1.02371 1.98367 1.77002 1.29635 1.95706 1.67446 1.07879 1.25587 1.25878 1.24958 0.99033 0.77686 0.87794 1.42391 1.04131 1.06835 1.59786 1.17193 0.98426 0.88398 1.04248 1.20540 0.97079 0.92117 0.94499 1.21156 0.98300 0.99079 1.04738 1.19199 0.90476 0.85762 0.93164 1.83565 1.53579 1.25486 1.48386 1.20810 1.14790 1.02713 1.08276 0.87335 1.24502 0.98611 0.94602 0.96195 1.69653 1.39912 1.13137 1.28113 0.86167 0.81593 0.77576 0.81534 1.19699 1.20658 1.18217 1.19988 1.03663 0.93580 1.02924 1.20474 0.94679 0.96930 0.96962 0.91292 0.93677 0.91554 0.76403 0.77378 0.77201 0.86518 0.84276 0.90797 0.85601 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.34 59.84 0.56 0.92 16 2 N -0.58 -8.95 8.96 -66.70 -0.60 -9.55 16 3 C 0.38 5.51 7.19 -155.37 -1.12 4.40 16 4 C 0.06 0.77 6.70 -83.17 -0.56 0.21 16 5 N -0.88 -8.13 5.67 32.71 0.19 -7.94 16 6 C 0.15 1.86 7.27 -17.34 -0.13 1.74 16 7 Cl -0.04 -0.39 28.52 -51.86 -1.48 -1.86 16 8 N -0.54 -6.81 10.34 -11.28 -0.12 -6.93 16 9 C 0.39 4.46 11.11 -89.56 -1.00 3.46 16 10 N -0.43 -5.99 2.84 -61.06 -0.17 -6.17 16 11 C 0.01 0.13 5.45 -83.60 -0.46 -0.33 16 12 C -0.02 -0.40 8.69 -39.42 -0.34 -0.74 16 13 C -0.21 -4.30 9.16 -39.42 -0.36 -4.66 16 14 C 0.17 3.54 6.65 -39.07 -0.26 3.28 16 15 O -0.21 -5.07 8.58 0.07 0.00 -5.07 16 16 C -0.39 -10.41 9.94 30.87 0.31 -10.10 16 17 H 0.11 2.96 5.43 -52.48 -0.28 2.67 16 18 C 0.07 1.75 5.49 -17.52 -0.10 1.65 16 19 N -0.87 -24.18 13.96 55.48 0.77 -23.41 16 20 Si 0.91 20.57 28.62 -169.99 -4.86 15.70 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.26 -5.86 7.11 56.52 0.40 -5.45 16 24 C -0.18 -3.16 9.98 -39.42 -0.39 -3.55 16 25 C -0.07 -1.04 9.37 -39.42 -0.37 -1.41 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.46 6.72 -51.93 -0.35 0.11 16 28 H 0.07 0.69 6.11 -51.93 -0.32 0.38 16 29 H 0.40 3.27 6.02 -40.82 -0.25 3.02 16 30 H 0.40 3.04 8.90 -40.82 -0.36 2.68 16 31 H 0.21 1.64 7.87 -52.49 -0.41 1.23 16 32 H 0.12 2.03 7.45 -52.48 -0.39 1.64 16 33 H 0.14 2.98 5.63 -52.49 -0.30 2.69 16 34 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 36 H 0.12 1.38 7.94 -52.48 -0.42 0.96 16 LS Contribution 321.74 15.07 4.85 4.85 Total: -1.00 -29.48 321.74 -8.69 -38.16 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -3.06 Total: 7.34 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -4.21 Total: -5.12 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: 0.07 Total: -53.99 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: 0.00 Total: -5.07 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.86 Total: 15.70 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.48 Total: -1.86 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.48 -8.69 -38.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212606143.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.896 kcal (2) G-P(sol) polarization free energy of solvation -29.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds