Wall clock time and date at job start Tue Mar 31 2020 13:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45196 * 109.47249 * 2 1 4 4 C 1.34231 * 116.99879 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00221 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99453 * 179.97438 * 4 3 2 7 7 C 1.53002 * 109.46665 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.47475 * 54.51973 * 7 6 4 9 9 C 1.50699 * 109.46887 * 174.51390 * 7 6 4 10 10 H 1.08009 * 119.99958 * 95.00985 * 9 7 6 11 11 C 1.37875 * 120.00140 * 275.01103 * 9 7 6 12 12 N 1.31510 * 120.00063 * 5.14162 * 11 9 7 13 13 Si 1.86803 * 120.00116 * 185.14579 * 11 9 7 14 14 H 1.48506 * 109.46918 * 269.99861 * 13 11 9 15 15 H 1.48506 * 109.47245 * 29.99372 * 13 11 9 16 16 H 1.48500 * 109.47349 * 149.99859 * 13 11 9 17 17 O 1.42904 * 109.47379 * 294.51362 * 7 6 4 18 18 C 1.35942 * 116.99799 * 155.30925 * 17 7 6 19 19 C 1.39297 * 119.96869 * 5.53565 * 18 17 7 20 20 C 1.36027 * 120.53305 * 179.97438 * 19 18 17 21 21 C 1.41178 * 120.54437 * 0.02562 * 20 19 18 22 22 C 1.45470 * 129.27847 * 179.97438 * 21 20 19 23 23 C 1.31767 * 114.89624 * 180.02562 * 22 21 20 24 24 S 1.75292 * 111.41352 * 359.97438 * 23 22 21 25 25 C 1.39732 * 118.91465 * 359.97438 * 21 20 19 26 26 C 1.37920 * 119.96478 * 185.25670 * 18 17 7 27 27 H 1.08998 * 109.46780 * 60.00263 * 1 2 3 28 28 H 1.09009 * 109.46965 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47077 * 300.00099 * 1 2 3 30 30 H 1.09003 * 109.47321 * 239.99293 * 2 1 3 31 31 H 1.09006 * 109.47010 * 120.00317 * 2 1 3 32 32 H 1.08997 * 109.47197 * 60.00721 * 6 4 3 33 33 H 1.08999 * 109.47464 * 299.99920 * 6 4 3 34 34 H 0.96997 * 120.00292 * 355.00730 * 12 11 9 35 35 H 1.08001 * 119.73332 * 0.02562 * 19 18 17 36 36 H 1.08003 * 119.72551 * 180.02562 * 20 19 18 37 37 H 1.07991 * 122.54938 * 359.97438 * 22 21 20 38 38 H 1.07997 * 124.28949 * 180.02562 * 23 22 21 39 39 H 1.08003 * 119.92975 * 359.97438 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 0.0014 8 1 5.7811 2.2419 -0.8346 9 6 6.0244 4.2432 -0.1350 10 1 6.3101 4.7985 0.7463 11 6 6.1865 4.8025 -1.3847 12 7 5.7465 4.1698 -2.4504 13 14 7.0313 6.4589 -1.5643 14 1 6.0188 7.5422 -1.4839 15 1 8.0252 6.6285 -0.4741 16 1 7.7214 6.5228 -2.8777 17 8 5.8940 2.2750 1.2281 18 6 7.1069 1.6611 1.2153 19 6 7.9046 1.7202 0.0749 20 6 9.1204 1.1105 0.0497 21 6 9.5939 0.4072 1.1785 22 6 10.8482 -0.3070 1.3591 23 6 11.0013 -0.8691 2.5410 24 16 9.6126 -0.5813 3.5713 25 6 8.7935 0.3480 2.3223 26 6 7.5487 0.9853 2.3334 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.5844 3.4700 0.8895 33 1 3.5852 3.4690 -0.8905 34 1 5.3735 3.2785 -2.3657 35 1 7.5555 2.2551 -0.7959 36 1 9.7284 1.1650 -0.8413 37 1 11.5966 -0.3723 0.5833 38 1 11.8722 -1.4346 2.8376 39 1 6.9305 0.9450 3.2181 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233604891.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:20 Heat of formation + Delta-G solvation = -106.462224 kcal Electronic energy + Delta-G solvation = -24267.811328 eV Core-core repulsion = 20652.331600 eV Total energy + Delta-G solvation = -3615.479727 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.71852 -41.00036 -39.17689 -37.68041 -35.97641 -35.10844 -33.01356 -32.26562 -31.77540 -29.36586 -27.85035 -25.29002 -24.45333 -23.69460 -23.38945 -21.94244 -21.22877 -19.96533 -19.23782 -18.43640 -17.99285 -17.60447 -17.25375 -17.03809 -16.45507 -16.03068 -15.67691 -15.48930 -15.18814 -14.75844 -14.69495 -14.40158 -14.27674 -13.83349 -13.79810 -13.60258 -13.40952 -13.17021 -13.13801 -12.85820 -12.68193 -12.55571 -12.31265 -11.98125 -11.85222 -11.72885 -11.59136 -11.58739 -11.42304 -10.84608 -10.64014 -10.53964 -9.06975 -8.77805 -8.54278 -6.57087 -0.12404 0.18604 0.52040 1.07662 1.12501 1.40225 1.54419 1.57023 1.68739 1.80411 2.42945 2.54998 2.73399 3.04680 3.68543 3.75564 3.82187 3.93216 4.04454 4.11825 4.19388 4.20561 4.27378 4.31699 4.34985 4.54545 4.67053 4.78424 4.80788 4.84253 4.87234 4.94290 5.02111 5.08815 5.31082 5.37562 5.43851 5.50589 5.61363 5.68268 5.98773 6.36740 6.60208 6.69882 7.24472 8.58440 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.008816 B = 0.004929 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.381391 B = 5679.164197 C = 8278.496638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 O -0.363 6.363 4 C 0.463 3.537 5 O -0.535 6.535 6 C -0.097 4.097 7 C 0.215 3.785 8 H 0.021 0.979 9 C -0.624 4.624 10 H 0.053 0.947 11 C -0.004 4.004 12 N -0.914 5.914 13 Si 1.113 2.887 14 H -0.267 1.267 15 H -0.278 1.278 16 H -0.280 1.280 17 O -0.327 6.327 18 C 0.163 3.837 19 C -0.196 4.196 20 C -0.046 4.046 21 C -0.137 4.137 22 C -0.111 4.111 23 C -0.194 4.194 24 S 0.084 5.916 25 C -0.117 4.117 26 C -0.161 4.161 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.259 0.741 35 H 0.119 0.881 36 H 0.149 0.851 37 H 0.172 0.828 38 H 0.204 0.796 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.759 -8.734 6.542 11.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.026 4.026 3 O -0.280 6.280 4 C 0.308 3.692 5 O -0.424 6.424 6 C -0.135 4.135 7 C 0.160 3.840 8 H 0.039 0.961 9 C -0.661 4.661 10 H 0.071 0.929 11 C -0.205 4.205 12 N -0.549 5.549 13 Si 0.934 3.066 14 H -0.192 1.192 15 H -0.204 1.204 16 H -0.205 1.205 17 O -0.241 6.241 18 C 0.113 3.887 19 C -0.216 4.216 20 C -0.066 4.066 21 C -0.145 4.145 22 C -0.141 4.141 23 C -0.327 4.327 24 S 0.346 5.654 25 C -0.232 4.232 26 C -0.185 4.185 27 H 0.088 0.912 28 H 0.123 0.877 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.070 0.930 35 H 0.137 0.863 36 H 0.167 0.833 37 H 0.189 0.811 38 H 0.221 0.779 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.909 -8.343 7.071 11.102 hybrid contribution -0.421 -0.763 -0.703 1.120 sum 1.488 -9.106 6.368 11.211 Atomic orbital electron populations 1.21815 0.89642 1.04567 1.03812 1.23329 0.97635 0.79431 1.02167 1.86538 1.23797 1.33813 1.83871 1.24345 0.80638 0.93197 0.71046 1.90610 1.61146 1.44043 1.46623 1.21832 0.95706 0.89784 1.06188 1.19926 0.89498 0.93127 0.81433 0.96088 1.22393 1.46645 1.01245 0.95797 0.92887 1.27114 0.94529 1.07687 0.91196 1.70942 1.38244 1.13707 1.32050 0.82966 0.76243 0.71224 0.76165 1.19165 1.20350 1.20528 1.85849 1.31768 1.68016 1.38427 1.18911 0.85311 0.90571 0.93880 1.21055 0.96936 1.04579 0.99019 1.20742 0.94303 0.93861 0.97678 1.19584 0.96413 1.04249 0.94238 1.21091 0.95688 0.98199 0.99082 1.25331 1.03054 1.07314 0.96973 1.83815 1.12046 1.53954 1.15614 1.22537 0.97958 1.03465 0.99253 1.19517 0.96603 1.04130 0.98276 0.91239 0.87729 0.91063 0.91876 0.91693 0.86667 0.86867 0.92994 0.86297 0.83348 0.81071 0.77883 0.85262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 10.29 71.98 0.74 -1.92 16 2 C 0.05 1.34 6.19 71.98 0.45 1.78 16 3 O -0.36 -12.93 10.22 -51.43 -0.53 -13.45 16 4 C 0.46 19.65 7.84 71.24 0.56 20.21 16 5 O -0.53 -25.50 15.18 26.93 0.41 -25.09 16 6 C -0.10 -4.29 5.40 29.85 0.16 -4.13 16 7 C 0.22 10.84 0.80 29.85 0.02 10.86 16 8 H 0.02 1.18 4.90 -2.39 -0.01 1.17 16 9 C -0.62 -32.97 7.71 25.60 0.20 -32.77 16 10 H 0.05 2.89 7.82 -2.91 -0.02 2.87 16 11 C 0.00 -0.20 5.45 84.65 0.46 0.26 16 12 N -0.91 -50.50 13.63 21.45 0.29 -50.21 16 13 Si 1.11 46.91 29.91 68.60 2.05 48.97 16 14 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 15 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 16 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 17 O -0.33 -16.39 9.05 -79.61 -0.72 -17.11 16 18 C 0.16 7.64 6.58 22.45 0.15 7.78 16 19 C -0.20 -8.90 8.61 22.01 0.19 -8.71 16 20 C -0.05 -1.73 10.04 22.48 0.23 -1.51 16 21 C -0.14 -4.69 6.04 -20.33 -0.12 -4.81 16 22 C -0.11 -2.77 10.39 23.39 0.24 -2.53 16 23 C -0.19 -4.17 11.02 67.08 0.74 -3.43 16 24 S 0.08 2.25 23.23 -56.49 -1.31 0.94 16 25 C -0.12 -4.21 6.48 23.02 0.15 -4.06 16 26 C -0.16 -6.67 10.01 22.58 0.23 -6.45 16 27 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 1.79 8.13 -2.39 -0.02 1.77 16 31 H 0.06 1.82 8.13 -2.38 -0.02 1.80 16 32 H 0.12 4.70 8.14 -2.39 -0.02 4.68 16 33 H 0.11 5.05 7.91 -2.39 -0.02 5.03 16 34 H 0.26 14.59 6.44 -92.71 -0.60 13.99 16 35 H 0.12 6.03 5.66 -2.91 -0.02 6.01 16 36 H 0.15 4.62 8.06 -2.91 -0.02 4.59 16 37 H 0.17 3.13 8.06 -2.92 -0.02 3.11 16 38 H 0.20 2.65 8.06 -2.91 -0.02 2.62 16 39 H 0.13 5.01 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -66.08 349.17 5.82 -60.26 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 1.24 Total: 25.14 kcal Atomic # 6 Polarization: -33.81 SS G_CDS: 4.39 Total: -29.43 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: 0.29 Total: -50.21 kcal Atomic # 8 Polarization: -54.82 SS G_CDS: -0.84 Total: -55.66 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.05 Total: 48.97 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -1.31 Total: 0.94 kcal Total: -66.08 5.82 -60.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233604891.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.206 kcal (2) G-P(sol) polarization free energy of solvation -66.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds