Wall clock time and date at job start Tue Mar 31 2020 12:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99981 * 2 1 4 4 H 1.48495 * 109.47026 * 240.00144 * 3 2 1 5 5 H 1.48493 * 109.46998 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46980 * 120.00026 * 3 2 1 7 7 C 1.38817 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99644 * 222.73924 * 7 2 1 9 9 N 1.36933 * 119.99886 * 42.74251 * 7 2 1 10 10 C 1.46505 * 119.99976 * 342.91986 * 9 7 2 11 11 C 1.50695 * 109.47451 * 263.40663 * 10 9 7 12 12 C 1.38237 * 119.99584 * 67.67229 * 11 10 9 13 13 C 1.38234 * 119.99994 * 180.25529 * 12 11 10 14 14 C 1.38233 * 119.99912 * 359.52694 * 13 12 11 15 15 C 1.38237 * 119.99937 * 0.43161 * 14 13 12 16 16 C 1.38227 * 120.00399 * 247.64849 * 11 10 9 17 17 C 1.46501 * 120.00174 * 162.92619 * 9 7 2 18 18 C 1.50699 * 109.46939 * 271.64200 * 17 9 7 19 19 C 1.38177 * 120.39603 * 89.49671 * 18 17 9 20 20 N 1.31877 * 120.84107 * 179.97438 * 19 18 17 21 21 C 1.31953 * 121.72728 * 0.02562 * 20 19 18 22 22 Cl 1.73602 * 119.65251 * 179.97438 * 21 20 19 23 23 C 1.38585 * 120.69806 * 359.97438 * 21 20 19 24 24 F 1.35108 * 120.44856 * 180.02562 * 23 21 20 25 25 C 1.38643 * 120.38522 * 269.21933 * 18 17 9 26 26 H 0.97002 * 119.99836 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46769 * 143.40794 * 10 9 7 28 28 H 1.09006 * 109.47029 * 23.41421 * 10 9 7 29 29 H 1.08003 * 120.00342 * 359.97438 * 12 11 10 30 30 H 1.08000 * 120.00209 * 179.72630 * 13 12 11 31 31 H 1.07998 * 120.00453 * 180.21429 * 14 13 12 32 32 H 1.08001 * 119.99926 * 179.78507 * 15 14 13 33 33 H 1.08005 * 120.00194 * 0.02562 * 16 11 10 34 34 H 1.09000 * 109.46471 * 31.63817 * 17 9 7 35 35 H 1.08996 * 109.47336 * 151.64075 * 17 9 7 36 36 H 1.08005 * 119.58326 * 0.02562 * 19 18 17 37 37 H 1.08003 * 120.79813 * 0.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 2.8752 -1.3266 0.6342 9 7 1.5984 -2.2302 -0.8059 10 6 0.2481 -2.2196 -1.3743 11 6 -0.6664 -3.0512 -0.5123 12 6 -0.9855 -2.6289 0.7647 13 6 -1.8201 -3.3943 1.5574 14 6 -2.3436 -4.5770 1.0695 15 6 -2.0253 -4.9988 -0.2078 16 6 -1.1867 -4.2358 -0.9987 17 6 2.5078 -3.3408 -1.0990 18 6 3.3331 -3.0067 -2.3147 19 6 4.5403 -2.3479 -2.1808 20 7 5.2699 -2.0516 -3.2386 21 6 4.8822 -2.3679 -4.4596 22 17 5.8849 -1.9511 -5.8141 23 6 3.6831 -3.0294 -4.6721 24 9 3.2914 -3.3514 -5.9244 25 6 2.8928 -3.3618 -3.5805 26 1 -0.4850 0.8401 0.0004 27 1 0.2748 -2.6348 -2.3818 28 1 -0.1216 -1.1949 -1.4134 29 1 -0.5790 -1.7033 1.1449 30 1 -2.0659 -3.0666 2.5568 31 1 -2.9985 -5.1733 1.6875 32 1 -2.4315 -5.9246 -0.5877 33 1 -0.9374 -4.5657 -1.9965 34 1 3.1667 -3.5053 -0.2464 35 1 1.9285 -4.2440 -1.2901 36 1 4.8913 -2.0727 -1.1971 37 1 1.9552 -3.8809 -3.7144 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237405039.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:58 Heat of formation + Delta-G solvation = 42.350468 kcal Electronic energy + Delta-G solvation = -24014.107720 eV Core-core repulsion = 20311.869735 eV Total energy + Delta-G solvation = -3702.237985 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.079 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -48.88798 -39.95959 -38.45791 -36.66893 -35.92449 -33.02429 -31.59521 -31.17863 -30.01413 -29.83480 -26.27782 -25.73531 -23.70865 -22.86718 -21.73641 -21.25337 -20.02954 -17.60868 -17.31024 -16.99019 -16.72520 -15.88203 -15.81395 -15.17219 -14.47561 -14.20021 -14.09845 -13.87046 -13.71212 -13.58860 -13.34196 -13.06382 -12.60452 -12.55882 -12.14198 -11.84310 -11.72246 -11.55033 -11.33437 -11.17602 -10.91305 -10.58383 -10.52234 -10.29760 -10.19683 -9.76375 -9.59078 -9.55253 -8.58257 -8.44904 -8.12302 -7.83840 -7.30066 -6.28558 -3.31526 0.96424 1.20270 1.85094 2.14699 2.26491 3.26812 3.38588 3.46395 3.68615 4.06766 4.30188 4.58209 4.62579 4.77126 4.89115 5.11157 5.34307 5.44461 5.55142 5.60721 5.63068 5.73686 5.85262 6.01631 6.03867 6.25672 6.32523 6.39385 6.43939 6.57813 6.69479 6.83756 6.98999 7.18232 7.38468 7.51236 7.62253 7.73778 7.80565 7.90127 8.16555 8.84950 9.51048 9.99289 10.74917 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.012514 B = 0.004572 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.936774 B = 6122.331925 C = 7768.483647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.034 3.966 3 Si 0.858 3.142 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.281 4.281 8 H 0.085 0.915 9 N -0.576 5.576 10 C 0.159 3.841 11 C -0.070 4.070 12 C -0.070 4.070 13 C -0.143 4.143 14 C -0.142 4.142 15 C -0.142 4.142 16 C -0.136 4.136 17 C 0.188 3.812 18 C -0.095 4.095 19 C 0.124 3.876 20 N -0.455 5.455 21 C 0.124 3.876 22 Cl -0.034 7.034 23 C 0.062 3.938 24 F -0.126 7.126 25 C -0.097 4.097 26 H 0.264 0.736 27 H 0.019 0.981 28 H 0.134 0.866 29 H 0.162 0.838 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.171 0.829 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.925 -7.639 -4.056 8.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.166 4.166 3 Si 0.685 3.315 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.407 4.407 8 H 0.103 0.897 9 N -0.293 5.293 10 C 0.034 3.966 11 C -0.073 4.073 12 C -0.088 4.088 13 C -0.161 4.161 14 C -0.161 4.161 15 C -0.160 4.160 16 C -0.155 4.155 17 C 0.060 3.940 18 C -0.101 4.101 19 C -0.034 4.034 20 N -0.164 5.164 21 C -0.042 4.042 22 Cl -0.006 7.006 23 C 0.039 3.961 24 F -0.105 7.105 25 C -0.124 4.124 26 H 0.074 0.926 27 H 0.038 0.962 28 H 0.151 0.849 29 H 0.179 0.821 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.188 0.812 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.628 -7.017 -4.056 8.521 hybrid contribution -0.412 0.464 -0.534 0.819 sum 2.216 -6.553 -4.591 8.302 Atomic orbital electron populations 1.69967 1.05930 1.26742 1.46922 1.24867 0.94713 0.97796 0.99255 0.87022 0.81031 0.84758 0.78713 1.20872 1.21709 1.20665 1.19071 1.12280 0.89423 1.19953 0.89736 1.44071 1.07705 1.23067 1.54474 1.20954 0.82681 1.02766 0.90178 1.20907 0.95919 0.94005 0.96436 1.21880 0.93667 1.00009 0.93263 1.21232 0.99653 0.95601 0.99628 1.20911 1.01549 0.97506 0.96093 1.20859 1.00451 0.99652 0.95035 1.21085 0.99445 0.95868 0.99123 1.19766 0.91686 0.91095 0.91459 1.22254 0.94847 0.95536 0.97503 1.22663 0.90606 0.93814 0.96360 1.67035 1.34455 1.17714 0.97234 1.21519 0.90879 1.01500 0.90322 1.98384 1.69515 1.92390 1.40292 1.18239 0.94716 1.02232 0.80863 1.91519 1.90587 1.90707 1.37685 1.21537 0.99916 1.00268 0.90675 0.92577 0.96246 0.84920 0.82051 0.87578 0.87855 0.87791 0.87783 0.91528 0.92308 0.81203 0.83290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.42 8.00 55.49 0.44 -19.97 16 2 C 0.03 0.80 4.96 -17.43 -0.09 0.72 16 3 Si 0.86 19.22 29.69 -169.99 -5.05 14.18 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.28 -6.38 9.45 -15.06 -0.14 -6.52 16 8 H 0.08 1.90 8.05 -52.49 -0.42 1.48 16 9 N -0.58 -11.70 2.47 -175.98 -0.43 -12.13 16 10 C 0.16 3.26 5.34 -5.19 -0.03 3.23 16 11 C -0.07 -1.38 5.46 -104.63 -0.57 -1.95 16 12 C -0.07 -1.44 9.34 -39.58 -0.37 -1.81 16 13 C -0.14 -2.57 10.05 -39.58 -0.40 -2.97 16 14 C -0.14 -2.32 10.05 -39.58 -0.40 -2.72 16 15 C -0.14 -2.28 10.05 -39.58 -0.40 -2.68 16 16 C -0.14 -2.36 9.67 -39.59 -0.38 -2.74 16 17 C 0.19 3.12 5.83 -5.19 -0.03 3.09 16 18 C -0.10 -1.51 5.47 -104.50 -0.57 -2.08 16 19 C 0.12 2.02 10.86 -17.55 -0.19 1.83 16 20 N -0.45 -7.83 10.34 -10.31 -0.11 -7.93 16 21 C 0.12 2.03 7.28 -17.37 -0.13 1.91 16 22 Cl -0.03 -0.50 28.78 -51.86 -1.49 -2.00 16 23 C 0.06 0.98 7.31 -39.24 -0.29 0.69 16 24 F -0.13 -1.92 16.86 2.25 0.04 -1.88 16 25 C -0.10 -1.46 9.84 -39.22 -0.39 -1.84 16 26 H 0.26 6.24 8.31 -40.82 -0.34 5.90 16 27 H 0.02 0.37 7.87 -51.93 -0.41 -0.04 16 28 H 0.13 3.12 4.84 -51.93 -0.25 2.87 16 29 H 0.16 3.73 5.58 -52.48 -0.29 3.44 16 30 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 31 H 0.10 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.10 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.10 1.60 7.96 -52.48 -0.42 1.18 16 34 H 0.07 1.05 8.00 -51.93 -0.42 0.63 16 35 H 0.06 0.91 8.01 -51.93 -0.42 0.49 16 36 H 0.17 2.52 8.06 -52.48 -0.42 2.10 16 37 H 0.15 1.97 8.06 -52.48 -0.42 1.55 16 LS Contribution 337.34 15.07 5.08 5.08 Total: -1.00 -24.33 337.34 -9.76 -34.09 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -3.87 Total: 4.42 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -4.37 Total: -13.86 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: -0.10 Total: -40.04 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.05 Total: 14.18 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.49 Total: -2.00 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -24.33 -9.76 -34.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237405039.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.437 kcal (2) G-P(sol) polarization free energy of solvation -24.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds