Wall clock time and date at job start Tue Mar 31 2020 12:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42906 * 109.47101 * 2 1 4 4 C 1.35804 * 117.00237 * 179.97438 * 3 2 1 5 5 C 1.39015 * 119.89887 * 359.72661 * 4 3 2 6 6 C 1.37735 * 120.11812 * 179.76078 * 5 4 3 7 7 C 1.39739 * 119.92307 * 0.53330 * 6 5 4 8 8 C 1.47765 * 120.10069 * 179.69685 * 7 6 5 9 9 C 1.39138 * 120.32476 * 65.02486 * 8 7 6 10 10 C 1.38321 * 119.95720 * 179.97438 * 9 8 7 11 11 F 1.35091 * 119.69419 * 179.97438 * 10 9 8 12 12 C 1.39255 * 120.61510 * 0.02562 * 10 9 8 13 13 C 1.36322 * 120.66736 * 359.97275 * 12 10 9 14 14 C 1.40798 * 120.02627 * 359.78870 * 13 12 10 15 15 C 1.40790 * 120.30894 * 180.25447 * 14 13 12 16 16 H 1.07998 * 119.99604 * 205.23407 * 15 14 13 17 17 C 1.40012 * 119.99636 * 25.24086 * 15 14 13 18 18 N 1.30821 * 120.00482 * 15.82189 * 17 15 14 19 19 Si 1.86799 * 119.99569 * 195.81966 * 17 15 14 20 20 H 1.48503 * 109.47293 * 60.00169 * 19 17 15 21 21 H 1.48496 * 109.47094 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47145 * 300.00269 * 19 17 15 23 23 C 1.39832 * 119.80146 * 359.72497 * 7 6 5 24 24 Cl 1.73599 * 120.06389 * 179.97438 * 23 7 6 25 25 C 1.37928 * 119.87857 * 359.97438 * 23 7 6 26 26 H 1.09007 * 109.46990 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47260 * 299.99412 * 1 2 3 28 28 H 1.08998 * 109.46941 * 60.00230 * 1 2 3 29 29 H 1.09004 * 109.47575 * 240.00149 * 2 1 3 30 30 H 1.09006 * 109.47559 * 119.99661 * 2 1 3 31 31 H 1.07995 * 119.93452 * 0.02562 * 5 4 3 32 32 H 1.08007 * 120.03613 * 180.25548 * 6 5 4 33 33 H 1.08007 * 120.02330 * 359.95441 * 9 8 7 34 34 H 1.08001 * 119.66041 * 179.97438 * 12 10 9 35 35 H 1.08004 * 119.98929 * 180.02562 * 13 12 10 36 36 H 0.96990 * 120.00246 * 180.02562 * 18 17 15 37 37 H 1.07998 * 119.96484 * 180.02562 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3526 1.5253 0.0005 5 6 4.1975 0.4214 0.0068 6 6 5.5637 0.5967 0.0024 7 6 6.1010 1.8867 0.0029 8 6 7.5660 2.0793 0.0050 9 6 8.3302 1.6678 -1.0826 10 6 9.7010 1.8523 -1.0728 11 9 10.4379 1.4503 -2.1313 12 6 10.3288 2.4475 0.0184 13 6 9.6046 2.8601 1.0972 14 6 8.2070 2.6904 1.1143 15 6 7.4527 3.1192 2.2230 16 1 6.5012 2.6569 2.4401 17 6 7.9362 4.1451 3.0440 18 7 8.9116 4.9113 2.6279 19 14 7.1885 4.4200 4.7336 20 1 7.3565 3.1941 5.5547 21 1 7.8717 5.5588 5.3980 22 1 5.7423 4.7258 4.5911 23 6 5.2481 2.9948 0.0020 24 17 5.9082 4.6003 0.0033 25 6 3.8813 2.8098 0.0002 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.7819 -0.5753 0.0108 32 1 6.2189 -0.2619 0.0031 33 1 7.8534 1.2044 -1.9337 34 1 11.4001 2.5836 0.0099 35 1 10.1027 3.3209 1.9375 36 1 9.2468 5.6217 3.1968 37 1 3.2212 3.6646 -0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241847371.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:26 Heat of formation + Delta-G solvation = -57.539034 kcal Electronic energy + Delta-G solvation = -23886.713574 eV Core-core repulsion = 20147.851304 eV Total energy + Delta-G solvation = -3738.862270 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.072 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.46077 -39.86563 -38.10288 -36.64356 -35.42051 -33.69870 -32.17537 -30.84294 -30.34321 -29.43474 -27.70204 -25.08484 -23.90547 -22.63967 -21.48268 -21.01836 -19.99430 -18.10413 -17.43950 -16.45249 -16.06845 -15.74267 -15.46077 -14.72171 -14.58835 -14.31986 -14.20204 -13.97792 -13.51873 -13.37992 -13.14145 -12.78792 -12.65729 -12.47166 -11.99819 -11.87917 -11.82768 -11.52096 -11.26285 -11.16353 -11.02825 -10.93140 -10.65684 -10.42405 -10.23572 -10.02305 -9.96004 -9.54400 -9.19915 -8.33799 -7.92832 -7.46369 -7.25745 -6.88601 -4.43985 1.63546 1.73857 2.60549 2.77217 2.82443 3.00561 3.03918 3.11117 3.49284 3.84226 4.10214 4.45380 4.81703 4.87125 5.09529 5.18346 5.27717 5.37998 5.43167 5.55516 5.64840 5.75117 5.88498 5.90496 5.95124 6.06711 6.25338 6.26646 6.57917 6.68497 6.85104 6.96325 6.97914 7.02919 7.12218 7.36898 7.56072 7.66846 7.80290 7.89171 8.09991 8.43873 8.70734 8.78387 10.01916 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.010932 B = 0.005375 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.589535 B = 5208.118970 C = 6835.647300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.318 6.318 4 C 0.117 3.883 5 C -0.208 4.208 6 C -0.074 4.074 7 C -0.006 4.006 8 C -0.171 4.171 9 C -0.090 4.090 10 C -0.052 4.052 11 F -0.175 7.175 12 C -0.123 4.123 13 C -0.138 4.138 14 C 0.132 3.868 15 C -0.427 4.427 16 H 0.079 0.921 17 C 0.082 3.918 18 N -0.779 5.779 19 Si 0.901 3.099 20 H -0.262 1.262 21 H -0.277 1.277 22 H -0.262 1.262 23 C 0.020 3.980 24 Cl -0.039 7.039 25 C -0.152 4.152 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.129 0.871 36 H 0.284 0.716 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.363 -5.523 -1.354 11.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.233 6.233 4 C 0.072 3.928 5 C -0.227 4.227 6 C -0.092 4.092 7 C -0.007 4.007 8 C -0.173 4.173 9 C -0.109 4.109 10 C -0.072 4.072 11 F -0.155 7.155 12 C -0.142 4.142 13 C -0.157 4.157 14 C 0.129 3.871 15 C -0.455 4.455 16 H 0.097 0.903 17 C -0.138 4.138 18 N -0.402 5.402 19 Si 0.725 3.275 20 H -0.186 1.186 21 H -0.202 1.202 22 H -0.186 1.186 23 C -0.008 4.008 24 Cl -0.009 7.009 25 C -0.171 4.171 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.147 0.853 36 H 0.095 0.905 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.293 -5.016 -1.311 11.525 hybrid contribution -0.025 0.080 0.594 0.600 sum -10.318 -4.937 -0.717 11.461 Atomic orbital electron populations 1.21767 0.93093 1.02564 1.03409 1.22715 0.95490 0.82449 1.01334 1.85992 1.19312 1.28771 1.89233 1.18676 0.81879 0.93443 0.98805 1.21089 0.94276 0.97489 1.09866 1.21069 0.93718 0.96529 0.97926 1.18510 0.93239 0.90544 0.98446 1.18072 0.89189 1.13964 0.96079 1.20436 0.91641 1.01067 0.97778 1.17112 0.89093 1.13399 0.87608 1.91277 1.77629 1.90247 1.56316 1.20479 0.98618 1.00900 0.94245 1.20969 0.93829 1.02797 0.98082 1.17457 0.91451 0.87952 0.90274 1.19422 1.04653 1.14449 1.07002 0.90254 1.25885 0.94025 0.94515 0.99409 1.69774 1.21442 1.12816 1.36213 0.86447 0.80529 0.78868 0.81669 1.18644 1.20151 1.18602 1.20818 0.91462 0.87624 1.00852 1.98386 1.85881 1.20467 1.96177 1.20044 0.93349 0.95283 1.08460 0.90614 0.91602 0.91636 0.92210 0.92145 0.85849 0.85394 0.88205 0.88342 0.85322 0.90486 0.85034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.16 0.38 -0.83 16 2 C 0.06 0.58 5.46 37.16 0.20 0.78 16 3 O -0.32 -4.61 10.13 -19.13 -0.19 -4.81 16 4 C 0.12 1.90 6.69 -39.05 -0.26 1.64 16 5 C -0.21 -3.21 9.02 -39.48 -0.36 -3.57 16 6 C -0.07 -1.30 9.74 -39.20 -0.38 -1.68 16 7 C -0.01 -0.13 4.39 -104.85 -0.46 -0.59 16 8 C -0.17 -3.88 4.71 -104.25 -0.49 -4.37 16 9 C -0.09 -2.02 9.70 -39.22 -0.38 -2.40 16 10 C -0.05 -1.22 7.30 -39.17 -0.29 -1.50 16 11 F -0.18 -3.95 17.26 2.25 0.04 -3.91 16 12 C -0.12 -2.85 9.94 -39.89 -0.40 -3.25 16 13 C -0.14 -3.34 8.62 -39.30 -0.34 -3.68 16 14 C 0.13 3.20 5.07 -106.54 -0.54 2.66 16 15 C -0.43 -10.25 6.66 -37.95 -0.25 -10.50 16 16 H 0.08 1.92 7.06 -52.49 -0.37 1.55 16 17 C 0.08 1.89 5.18 -17.32 -0.09 1.80 16 18 N -0.78 -18.44 10.88 55.55 0.60 -17.83 16 19 Si 0.90 17.81 29.59 -169.99 -5.03 12.78 16 20 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 21 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 22 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 23 C 0.02 0.39 5.68 -39.10 -0.22 0.17 16 24 Cl -0.04 -0.81 26.12 -51.86 -1.35 -2.16 16 25 C -0.15 -2.69 9.75 -39.45 -0.38 -3.08 16 26 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.57 7.67 -51.93 -0.40 0.17 16 30 H 0.06 0.59 7.64 -51.93 -0.40 0.19 16 31 H 0.12 1.52 6.27 -52.49 -0.33 1.19 16 32 H 0.13 2.06 8.06 -52.48 -0.42 1.64 16 33 H 0.10 2.05 8.06 -52.48 -0.42 1.62 16 34 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 35 H 0.13 3.17 6.13 -52.48 -0.32 2.85 16 36 H 0.28 6.20 8.30 -40.82 -0.34 5.86 16 37 H 0.13 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 333.20 15.07 5.02 5.02 Total: -1.00 -26.05 333.20 -9.08 -35.13 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -3.91 Total: 4.18 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: -4.26 Total: -28.40 kcal Atomic # 7 Polarization: -18.44 SS G_CDS: 0.60 Total: -17.83 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -0.19 Total: -4.81 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.04 Total: -3.91 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.35 Total: -2.16 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -26.05 -9.08 -35.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241847371.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.412 kcal (2) G-P(sol) polarization free energy of solvation -26.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds