Wall clock time and date at job start Tue Mar 31 2020 12:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42906 * 109.47101 * 2 1 4 4 C 1.35804 * 117.00237 * 179.97438 * 3 2 1 5 5 C 1.39015 * 119.89887 * 359.72661 * 4 3 2 6 6 C 1.37735 * 120.11812 * 179.76078 * 5 4 3 7 7 C 1.39739 * 119.92307 * 0.53330 * 6 5 4 8 8 C 1.47765 * 120.10069 * 179.69685 * 7 6 5 9 9 C 1.39138 * 120.32476 * 65.02486 * 8 7 6 10 10 C 1.38321 * 119.95720 * 179.97438 * 9 8 7 11 11 F 1.35091 * 119.69419 * 179.97438 * 10 9 8 12 12 C 1.39255 * 120.61510 * 0.02562 * 10 9 8 13 13 C 1.36322 * 120.66736 * 359.97275 * 12 10 9 14 14 C 1.40798 * 120.02627 * 359.78870 * 13 12 10 15 15 C 1.40790 * 120.30894 * 180.25447 * 14 13 12 16 16 H 1.07998 * 119.99604 * 205.23407 * 15 14 13 17 17 C 1.40012 * 119.99636 * 25.24086 * 15 14 13 18 18 N 1.30821 * 120.00482 * 15.82189 * 17 15 14 19 19 Si 1.86799 * 119.99569 * 195.81966 * 17 15 14 20 20 H 1.48503 * 109.47293 * 60.00169 * 19 17 15 21 21 H 1.48496 * 109.47094 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47145 * 300.00269 * 19 17 15 23 23 C 1.39832 * 119.80146 * 359.72497 * 7 6 5 24 24 Cl 1.73599 * 120.06389 * 179.97438 * 23 7 6 25 25 C 1.37928 * 119.87857 * 359.97438 * 23 7 6 26 26 H 1.09007 * 109.46990 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47260 * 299.99412 * 1 2 3 28 28 H 1.08998 * 109.46941 * 60.00230 * 1 2 3 29 29 H 1.09004 * 109.47575 * 240.00149 * 2 1 3 30 30 H 1.09006 * 109.47559 * 119.99661 * 2 1 3 31 31 H 1.07995 * 119.93452 * 0.02562 * 5 4 3 32 32 H 1.08007 * 120.03613 * 180.25548 * 6 5 4 33 33 H 1.08007 * 120.02330 * 359.95441 * 9 8 7 34 34 H 1.08001 * 119.66041 * 179.97438 * 12 10 9 35 35 H 1.08004 * 119.98929 * 180.02562 * 13 12 10 36 36 H 0.96990 * 120.00246 * 180.02562 * 18 17 15 37 37 H 1.07998 * 119.96484 * 180.02562 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3526 1.5253 0.0005 5 6 4.1975 0.4214 0.0068 6 6 5.5637 0.5967 0.0024 7 6 6.1010 1.8867 0.0029 8 6 7.5660 2.0793 0.0050 9 6 8.3302 1.6678 -1.0826 10 6 9.7010 1.8523 -1.0728 11 9 10.4379 1.4503 -2.1313 12 6 10.3288 2.4475 0.0184 13 6 9.6046 2.8601 1.0972 14 6 8.2070 2.6904 1.1143 15 6 7.4527 3.1192 2.2230 16 1 6.5012 2.6569 2.4401 17 6 7.9362 4.1451 3.0440 18 7 8.9116 4.9113 2.6279 19 14 7.1885 4.4200 4.7336 20 1 7.3565 3.1941 5.5547 21 1 7.8717 5.5588 5.3980 22 1 5.7423 4.7258 4.5911 23 6 5.2481 2.9948 0.0020 24 17 5.9082 4.6003 0.0033 25 6 3.8813 2.8098 0.0002 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.7819 -0.5753 0.0108 32 1 6.2189 -0.2619 0.0031 33 1 7.8534 1.2044 -1.9337 34 1 11.4001 2.5836 0.0099 35 1 10.1027 3.3209 1.9375 36 1 9.2468 5.6217 3.1968 37 1 3.2212 3.6646 -0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241847371.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:25 Heat of formation + Delta-G solvation = -67.384444 kcal Electronic energy + Delta-G solvation = -23887.140503 eV Core-core repulsion = 20147.851304 eV Total energy + Delta-G solvation = -3739.289199 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.072 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.26332 -41.11856 -39.62732 -38.13801 -36.92353 -35.46376 -33.32642 -32.16503 -31.64888 -31.20091 -29.21813 -26.83977 -24.90038 -24.13154 -22.87622 -22.62695 -21.54340 -19.34430 -19.17180 -18.11220 -17.24144 -17.00559 -16.97905 -16.37216 -16.11995 -16.00973 -15.79827 -15.55355 -14.77039 -14.56374 -14.50659 -14.36579 -13.95459 -13.73089 -13.39307 -13.31995 -13.08158 -12.96441 -12.80623 -12.70889 -12.53733 -12.20316 -12.09420 -11.82796 -11.77680 -11.59531 -11.39127 -11.26593 -10.94227 -9.73237 -9.58391 -9.19502 -8.85677 -8.60581 -6.25186 0.24377 0.33733 0.85599 1.02069 1.38762 1.40449 1.47304 1.50506 2.20298 2.38620 2.64867 2.75048 3.62045 3.85416 3.89358 4.06498 4.11847 4.20550 4.23123 4.32764 4.34564 4.42996 4.54430 4.59348 4.82404 4.96622 4.99303 5.07293 5.13257 5.19338 5.27343 5.32230 5.35032 5.55792 5.60295 5.60868 5.85854 5.97181 6.08394 6.30862 6.46947 6.63032 6.91431 6.98583 8.29855 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.010932 B = 0.005375 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.589535 B = 5208.118970 C = 6835.647300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.042 3.958 3 O -0.328 6.328 4 C 0.128 3.872 5 C -0.196 4.196 6 C -0.072 4.072 7 C -0.039 4.039 8 C -0.164 4.164 9 C -0.095 4.095 10 C -0.067 4.067 11 F -0.173 7.173 12 C -0.128 4.128 13 C -0.158 4.158 14 C 0.112 3.888 15 C -0.438 4.438 16 H 0.072 0.928 17 C 0.051 3.949 18 N -0.803 5.803 19 Si 0.956 3.044 20 H -0.258 1.258 21 H -0.268 1.268 22 H -0.264 1.264 23 C 0.007 3.993 24 Cl -0.061 7.061 25 C -0.162 4.162 26 H 0.102 0.898 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.162 0.838 32 H 0.142 0.858 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.119 0.881 36 H 0.290 0.710 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.479 -7.177 -1.089 14.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.033 4.033 3 O -0.242 6.242 4 C 0.082 3.918 5 C -0.214 4.214 6 C -0.090 4.090 7 C -0.040 4.040 8 C -0.166 4.166 9 C -0.114 4.114 10 C -0.086 4.086 11 F -0.153 7.153 12 C -0.147 4.147 13 C -0.178 4.178 14 C 0.109 3.891 15 C -0.466 4.466 16 H 0.090 0.910 17 C -0.167 4.167 18 N -0.427 5.427 19 Si 0.778 3.222 20 H -0.182 1.182 21 H -0.192 1.192 22 H -0.188 1.188 23 C -0.020 4.020 24 Cl -0.031 7.031 25 C -0.181 4.181 26 H 0.120 0.880 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.179 0.821 32 H 0.159 0.841 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.101 0.899 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.414 -6.682 -1.058 14.138 hybrid contribution 0.474 0.494 0.440 0.814 sum -11.940 -6.188 -0.618 13.462 Atomic orbital electron populations 1.21805 0.91345 1.04223 1.03136 1.23137 0.96962 0.80598 1.02555 1.86015 1.17966 1.31628 1.88638 1.18739 0.83030 0.93011 0.97010 1.21405 0.93164 0.99043 1.07804 1.21236 0.94987 0.95645 0.97149 1.18548 0.92073 0.92034 1.01391 1.18318 0.90703 1.12247 0.95288 1.20662 0.91444 1.00976 0.98304 1.17265 0.89626 1.13949 0.87792 1.91272 1.77622 1.90249 1.56113 1.20623 0.99410 1.00629 0.94041 1.20942 0.94237 1.04186 0.98396 1.17725 0.91622 0.88607 0.91113 1.19421 1.04478 1.15018 1.07647 0.90987 1.26489 0.94251 0.93949 1.01965 1.69813 1.22340 1.13249 1.37343 0.85613 0.79536 0.79048 0.78017 1.18243 1.19194 1.18850 1.20875 0.92302 0.86570 1.02231 1.98369 1.86302 1.22042 1.96427 1.20155 0.92601 0.96658 1.08724 0.87970 0.92012 0.91822 0.90741 0.91020 0.82082 0.84064 0.86480 0.86950 0.86342 0.89912 0.84258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 10.28 71.98 0.74 -1.14 16 2 C 0.04 0.71 5.46 71.98 0.39 1.11 16 3 O -0.33 -8.53 10.13 -91.36 -0.93 -9.46 16 4 C 0.13 3.83 6.69 22.61 0.15 3.99 16 5 C -0.20 -5.38 9.02 22.34 0.20 -5.18 16 6 C -0.07 -2.37 9.74 22.51 0.22 -2.15 16 7 C -0.04 -1.59 4.39 -20.01 -0.09 -1.68 16 8 C -0.16 -7.46 4.71 -19.62 -0.09 -7.56 16 9 C -0.09 -4.23 9.70 22.51 0.22 -4.01 16 10 C -0.07 -3.09 7.30 22.53 0.16 -2.93 16 11 F -0.17 -7.74 17.26 44.97 0.78 -6.96 16 12 C -0.13 -6.01 9.94 22.07 0.22 -5.79 16 13 C -0.16 -7.88 8.62 22.45 0.19 -7.68 16 14 C 0.11 5.55 5.07 -21.11 -0.11 5.44 16 15 C -0.44 -21.30 6.66 23.32 0.16 -21.14 16 16 H 0.07 3.53 7.06 -2.91 -0.02 3.51 16 17 C 0.05 2.39 5.18 85.27 0.44 2.83 16 18 N -0.80 -38.68 10.88 21.84 0.24 -38.44 16 19 Si 0.96 36.37 29.59 68.60 2.03 38.40 16 20 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 21 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 22 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 23 C 0.01 0.28 5.68 22.58 0.13 0.41 16 24 Cl -0.06 -2.58 26.12 -2.72 -0.07 -2.65 16 25 C -0.16 -5.57 9.75 22.35 0.22 -5.35 16 26 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 1.08 7.67 -2.38 -0.02 1.06 16 30 H 0.07 1.09 7.64 -2.38 -0.02 1.07 16 31 H 0.16 3.18 6.27 -2.91 -0.02 3.16 16 32 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 33 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 34 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 35 H 0.12 6.04 6.13 -2.91 -0.02 6.03 16 36 H 0.29 12.81 8.30 -92.72 -0.77 12.04 16 37 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -56.19 333.20 6.31 -49.88 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 1.11 Total: 20.08 kcal Atomic # 6 Polarization: -54.00 SS G_CDS: 3.16 Total: -50.84 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.24 Total: -38.44 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -0.93 Total: -9.46 kcal Atomic # 9 Polarization: -7.74 SS G_CDS: 0.78 Total: -6.96 kcal Atomic # 14 Polarization: 36.37 SS G_CDS: 2.03 Total: 38.40 kcal Atomic # 17 Polarization: -2.58 SS G_CDS: -0.07 Total: -2.65 kcal Total: -56.19 6.31 -49.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241847371.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.503 kcal (2) G-P(sol) polarization free energy of solvation -56.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds