Wall clock time and date at job start Tue Mar 31 2020 12:44:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30687 * 1
3 3 Si 1.86799 * 120.00180 * 2 1
4 4 H 1.48502 * 109.46849 * 269.99550 * 3 2 1
5 5 H 1.48494 * 109.47316 * 29.99583 * 3 2 1
6 6 H 1.48504 * 109.47302 * 149.99863 * 3 2 1
7 7 C 1.40186 * 119.99916 * 179.97438 * 2 1 3
8 8 H 1.07994 * 119.99956 * 180.02562 * 7 2 1
9 9 C 1.40425 * 119.99535 * 0.02562 * 7 2 1
10 10 N 1.34153 * 120.60928 * 359.97438 * 9 7 2
11 11 C 1.31448 * 119.88516 * 179.97438 * 10 9 7
12 12 C 1.39225 * 121.21924 * 0.25834 * 11 10 9
13 13 N 1.31698 * 121.27764 * 359.46107 * 12 11 10
14 14 C 1.33459 * 119.99608 * 0.52877 * 13 12 11
15 15 C 1.46288 * 120.58559 * 179.75371 * 14 13 12
16 16 C 1.35207 * 120.00006 * 359.97438 * 15 14 13
17 17 C 1.47029 * 120.00128 * 180.02562 * 16 15 14
18 18 C 1.39975 * 120.17999 * 359.71756 * 17 16 15
19 19 C 1.37836 * 119.81320 * 179.76921 * 18 17 16
20 20 C 1.38458 * 120.18310 * 0.48863 * 19 18 17
21 21 C 1.38423 * 120.36596 * 359.76523 * 20 19 18
22 22 C 1.37874 * 120.17741 * 0.02562 * 21 20 19
23 23 C 1.50703 * 120.08834 * 179.97438 * 22 21 20
24 24 F 1.39899 * 109.47099 * 359.97438 * 23 22 21
25 25 F 1.39893 * 109.47103 * 119.97598 * 23 22 21
26 26 F 1.39901 * 109.46799 * 239.97580 * 23 22 21
27 27 H 0.96999 * 119.99955 * 0.02562 * 1 2 3
28 28 H 1.08002 * 119.38693 * 179.97438 * 11 10 9
29 29 H 1.08010 * 119.36036 * 179.72388 * 12 11 10
30 30 H 1.07994 * 120.00392 * 179.97438 * 15 14 13
31 31 H 1.08003 * 119.99884 * 359.97438 * 16 15 14
32 32 H 1.08001 * 120.09669 * 359.97438 * 18 17 16
33 33 H 1.08003 * 119.90367 * 180.21624 * 19 18 17
34 34 H 1.08003 * 119.82031 * 179.74183 * 20 19 18
35 35 H 1.07998 * 119.91151 * 179.97438 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3069 0.0000 0.0000
3 14 2.2409 1.6177 0.0000
4 1 2.4885 2.0463 -1.4001
5 1 1.4384 2.6527 0.6999
6 1 3.5385 1.4401 0.7001
7 6 2.0078 -1.2141 0.0005
8 1 3.0877 -1.2141 0.0010
9 6 1.3055 -2.4301 0.0005
10 7 -0.0359 -2.4442 0.0005
11 6 -0.6788 -3.5908 0.0000
12 6 0.0067 -4.8025 0.0049
13 7 1.3231 -4.8434 -0.0005
14 6 2.0259 -3.7089 -0.0001
15 6 3.4884 -3.7393 -0.0005
16 6 4.1400 -4.9240 -0.0009
17 6 5.6100 -4.9546 -0.0008
18 6 6.3387 -3.7595 -0.0063
19 6 7.7165 -3.7970 -0.0014
20 6 8.3798 -5.0123 -0.0012
21 6 7.6667 -6.1987 -0.0011
22 6 6.2881 -6.1787 -0.0017
23 6 5.5138 -7.4716 -0.0021
24 9 6.4057 -8.5494 -0.0024
25 9 4.7083 -7.5331 1.1400
26 9 4.7085 -7.5324 -1.1445
27 1 -0.4850 0.8400 -0.0004
28 1 -1.7588 -3.5928 0.0005
29 1 -0.5518 -5.7270 0.0088
30 1 4.0478 -2.8155 -0.0006
31 1 3.5806 -5.8479 -0.0004
32 1 5.8228 -2.8107 -0.0111
33 1 8.2802 -2.8757 -0.0021
34 1 9.4596 -5.0348 -0.0016
35 1 8.1916 -7.1426 -0.0014
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001242490689.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:44:54
Heat of formation + Delta-G solvation = -75.560937 kcal
Electronic energy + Delta-G solvation = -25708.061648 eV
Core-core repulsion = 21448.913961 eV
Total energy + Delta-G solvation = -4259.147687 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.083 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-49.89408 -47.45057 -47.26693 -39.22530 -38.74328 -34.43948 -34.20979 -32.13741
-31.83949 -30.77606 -28.50729 -26.27876 -25.62012 -24.07142 -22.34872 -22.04836
-21.24962 -19.00061 -18.16206 -18.15612 -18.11014 -17.88992 -16.47141 -15.69254
-15.32619 -15.04080 -14.76374 -14.38097 -14.24905 -14.23946 -13.91028 -13.77714
-13.50252 -13.47521 -13.32763 -13.12156 -12.81668 -12.72934 -12.45619 -11.99198
-11.78160 -11.60903 -11.58171 -11.06563 -10.98019 -10.63036 -10.35235 -10.29550
-9.98196 -9.71063 -9.32577 -9.11544 -8.44757 -7.64447 -7.25666 -6.80687
-4.91983 0.81324 1.23464 2.08758 2.64593 2.83841 2.87486 2.95083
2.99353 3.41831 3.58823 3.94883 4.00004 4.30215 4.40201 4.73863
4.89078 4.97830 5.04690 5.32817 5.47249 5.58504 5.60026 5.69907
5.80840 5.85806 6.08806 6.16669 6.27077 6.31410 6.41431 6.49290
6.63529 6.70076 6.88590 6.97161 7.28479 7.37316 7.47487 7.73386
8.08028 8.37526 9.07638 9.60310 9.76564
Molecular weight = 320.08amu
Principal moments of inertia in cm(-1)
A = 0.014328 B = 0.004131 C = 0.003272
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1953.787965 B = 6776.270717 C = 8555.566511
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.688 5.688
2 C 0.058 3.942
3 Si 0.918 3.082
4 H -0.263 1.263
5 H -0.271 1.271
6 H -0.255 1.255
7 C -0.377 4.377
8 H 0.097 0.903
9 C 0.218 3.782
10 N -0.457 5.457
11 C 0.102 3.898
12 C -0.115 4.115
13 N -0.397 5.397
14 C -0.068 4.068
15 C 0.016 3.984
16 C -0.210 4.210
17 C 0.043 3.957
18 C -0.139 4.139
19 C -0.080 4.080
20 C -0.153 4.153
21 C -0.066 4.066
22 C -0.203 4.203
23 C 0.511 3.489
24 F -0.186 7.186
25 F -0.174 7.174
26 F -0.174 7.174
27 H 0.284 0.716
28 H 0.132 0.868
29 H 0.129 0.871
30 H 0.121 0.879
31 H 0.129 0.871
32 H 0.136 0.864
33 H 0.127 0.873
34 H 0.126 0.874
35 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.484 -3.876 -0.004 12.120
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.306 5.306
2 C -0.172 4.172
3 Si 0.740 3.260
4 H -0.187 1.187
5 H -0.195 1.195
6 H -0.178 1.178
7 C -0.405 4.405
8 H 0.115 0.885
9 C 0.094 3.906
10 N -0.173 5.173
11 C -0.071 4.071
12 C -0.279 4.279
13 N -0.110 5.110
14 C -0.211 4.211
15 C -0.003 4.003
16 C -0.231 4.231
17 C 0.043 3.957
18 C -0.157 4.157
19 C -0.098 4.098
20 C -0.171 4.171
21 C -0.085 4.085
22 C -0.205 4.205
23 C 0.457 3.543
24 F -0.168 7.168
25 F -0.155 7.155
26 F -0.155 7.155
27 H 0.096 0.904
28 H 0.149 0.851
29 H 0.146 0.854
30 H 0.139 0.861
31 H 0.147 0.853
32 H 0.154 0.846
33 H 0.145 0.855
34 H 0.144 0.856
35 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges 11.218 -3.693 -0.002 11.810
hybrid contribution -0.030 0.371 -0.004 0.372
sum 11.187 -3.322 -0.006 11.670
Atomic orbital electron populations
1.70051 1.07659 1.29388 1.23546 1.26344 0.95178 1.02037 0.93612
0.86121 0.80566 0.79424 0.79868 1.18747 1.19531 1.17836 1.19745
0.95217 0.89114 1.36460 0.88469 1.20426 0.88973 0.91943 0.89303
1.69561 1.07603 1.24821 1.15332 1.23533 1.00141 0.90287 0.93165
1.22510 0.90890 0.97725 1.16760 1.67821 1.07926 1.30259 1.04962
1.21255 0.92713 0.89675 1.17456 1.21738 0.91527 0.96617 0.90430
1.21920 0.89707 0.99864 1.11627 1.18911 0.94083 0.91181 0.91565
1.21435 0.93921 0.97846 1.02532 1.21231 0.94370 0.98019 0.96176
1.21029 0.99773 0.91890 1.04422 1.20820 0.91967 0.99330 0.96341
1.20017 0.94509 0.91580 1.14350 1.18231 0.77670 0.84242 0.74134
1.93114 1.68371 1.58954 1.96353 1.93226 1.74599 1.96690 1.50966
1.93228 1.74607 1.96693 1.50953 0.90422 0.85104 0.85388 0.86141
0.85296 0.84630 0.85542 0.85625 0.85137
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.69 -16.37 11.50 55.56 0.64 -15.73 16
2 C 0.06 1.30 5.50 -17.31 -0.10 1.20 16
3 Si 0.92 16.14 29.56 -169.99 -5.03 11.11 16
4 H -0.26 -4.58 7.11 56.52 0.40 -4.18 16
5 H -0.27 -4.69 7.11 56.52 0.40 -4.29 16
6 H -0.25 -4.34 7.11 56.52 0.40 -3.94 16
7 C -0.38 -8.93 8.84 -38.03 -0.34 -9.27 16
8 H 0.10 2.05 6.11 -52.49 -0.32 1.73 16
9 C 0.22 5.57 6.71 -82.58 -0.55 5.01 16
10 N -0.46 -11.83 8.06 -9.49 -0.08 -11.91 16
11 C 0.10 2.34 11.17 -17.35 -0.19 2.14 16
12 C -0.11 -2.59 11.17 -17.24 -0.19 -2.79 16
13 N -0.40 -9.71 9.53 -8.04 -0.08 -9.79 16
14 C -0.07 -1.66 6.90 -80.48 -0.56 -2.22 16
15 C 0.02 0.33 8.93 -37.43 -0.33 0.00 16
16 C -0.21 -4.14 8.39 -37.10 -0.31 -4.45 16
17 C 0.04 0.72 5.84 -105.05 -0.61 0.11 16
18 C -0.14 -2.00 9.42 -39.08 -0.37 -2.37 16
19 C -0.08 -0.94 10.03 -39.65 -0.40 -1.33 16
20 C -0.15 -1.71 10.04 -39.43 -0.40 -2.10 16
21 C -0.07 -0.84 9.42 -39.65 -0.37 -1.22 16
22 C -0.20 -3.15 5.41 -104.12 -0.56 -3.72 16
23 C 0.51 8.23 2.79 36.01 0.10 8.33 16
24 F -0.19 -2.67 15.98 2.25 0.04 -2.64 16
25 F -0.17 -3.03 16.01 2.25 0.04 -3.00 16
26 F -0.17 -3.03 16.01 2.25 0.04 -3.00 16
27 H 0.28 6.01 8.29 -40.82 -0.34 5.67 16
28 H 0.13 2.53 8.06 -52.49 -0.42 2.11 16
29 H 0.13 2.49 8.06 -52.48 -0.42 2.07 16
30 H 0.12 2.23 4.43 -52.49 -0.23 2.00 16
31 H 0.13 2.77 5.26 -52.48 -0.28 2.49 16
32 H 0.14 1.82 6.17 -52.49 -0.32 1.50 16
33 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16
34 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16
35 H 0.13 1.39 7.15 -52.49 -0.38 1.01 16
LS Contribution 318.17 15.07 4.79 4.79
Total: -1.00 -28.15 318.17 -7.17 -35.33
By element:
Atomic # 1 Polarization: 9.84 SS G_CDS: -2.35 Total: 7.49 kcal
Atomic # 6 Polarization: -7.48 SS G_CDS: -5.18 Total: -12.67 kcal
Atomic # 7 Polarization: -37.91 SS G_CDS: 0.49 Total: -37.42 kcal
Atomic # 9 Polarization: -8.74 SS G_CDS: 0.11 Total: -8.63 kcal
Atomic # 14 Polarization: 16.14 SS G_CDS: -5.03 Total: 11.11 kcal
Total LS contribution 4.79 Total: 4.79 kcal
Total: -28.15 -7.17 -35.33 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001242490689.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.236 kcal
(2) G-P(sol) polarization free energy of solvation -28.151 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.386 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.325 kcal
(6) G-S(sol) free energy of system = (1) + (5) -75.561 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds