Wall clock time and date at job start Tue Mar 31 2020 12:44:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30687 * 1
3 3 Si 1.86799 * 120.00180 * 2 1
4 4 H 1.48502 * 109.46849 * 269.99550 * 3 2 1
5 5 H 1.48494 * 109.47316 * 29.99583 * 3 2 1
6 6 H 1.48504 * 109.47302 * 149.99863 * 3 2 1
7 7 C 1.40186 * 119.99916 * 179.97438 * 2 1 3
8 8 H 1.07994 * 119.99956 * 180.02562 * 7 2 1
9 9 C 1.40425 * 119.99535 * 0.02562 * 7 2 1
10 10 N 1.34153 * 120.60928 * 359.97438 * 9 7 2
11 11 C 1.31448 * 119.88516 * 179.97438 * 10 9 7
12 12 C 1.39225 * 121.21924 * 0.25834 * 11 10 9
13 13 N 1.31698 * 121.27764 * 359.46107 * 12 11 10
14 14 C 1.33459 * 119.99608 * 0.52877 * 13 12 11
15 15 C 1.46288 * 120.58559 * 179.75371 * 14 13 12
16 16 C 1.35207 * 120.00006 * 359.97438 * 15 14 13
17 17 C 1.47029 * 120.00128 * 180.02562 * 16 15 14
18 18 C 1.39975 * 120.17999 * 359.71756 * 17 16 15
19 19 C 1.37836 * 119.81320 * 179.76921 * 18 17 16
20 20 C 1.38458 * 120.18310 * 0.48863 * 19 18 17
21 21 C 1.38423 * 120.36596 * 359.76523 * 20 19 18
22 22 C 1.37874 * 120.17741 * 0.02562 * 21 20 19
23 23 C 1.50703 * 120.08834 * 179.97438 * 22 21 20
24 24 F 1.39899 * 109.47099 * 359.97438 * 23 22 21
25 25 F 1.39893 * 109.47103 * 119.97598 * 23 22 21
26 26 F 1.39901 * 109.46799 * 239.97580 * 23 22 21
27 27 H 0.96999 * 119.99955 * 0.02562 * 1 2 3
28 28 H 1.08002 * 119.38693 * 179.97438 * 11 10 9
29 29 H 1.08010 * 119.36036 * 179.72388 * 12 11 10
30 30 H 1.07994 * 120.00392 * 179.97438 * 15 14 13
31 31 H 1.08003 * 119.99884 * 359.97438 * 16 15 14
32 32 H 1.08001 * 120.09669 * 359.97438 * 18 17 16
33 33 H 1.08003 * 119.90367 * 180.21624 * 19 18 17
34 34 H 1.08003 * 119.82031 * 179.74183 * 20 19 18
35 35 H 1.07998 * 119.91151 * 179.97438 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3069 0.0000 0.0000
3 14 2.2409 1.6177 0.0000
4 1 2.4885 2.0463 -1.4001
5 1 1.4384 2.6527 0.6999
6 1 3.5385 1.4401 0.7001
7 6 2.0078 -1.2141 0.0005
8 1 3.0877 -1.2141 0.0010
9 6 1.3055 -2.4301 0.0005
10 7 -0.0359 -2.4442 0.0005
11 6 -0.6788 -3.5908 0.0000
12 6 0.0067 -4.8025 0.0049
13 7 1.3231 -4.8434 -0.0005
14 6 2.0259 -3.7089 -0.0001
15 6 3.4884 -3.7393 -0.0005
16 6 4.1400 -4.9240 -0.0009
17 6 5.6100 -4.9546 -0.0008
18 6 6.3387 -3.7595 -0.0063
19 6 7.7165 -3.7970 -0.0014
20 6 8.3798 -5.0123 -0.0012
21 6 7.6667 -6.1987 -0.0011
22 6 6.2881 -6.1787 -0.0017
23 6 5.5138 -7.4716 -0.0021
24 9 6.4057 -8.5494 -0.0024
25 9 4.7083 -7.5331 1.1400
26 9 4.7085 -7.5324 -1.1445
27 1 -0.4850 0.8400 -0.0004
28 1 -1.7588 -3.5928 0.0005
29 1 -0.5518 -5.7270 0.0088
30 1 4.0478 -2.8155 -0.0006
31 1 3.5806 -5.8479 -0.0004
32 1 5.8228 -2.8107 -0.0111
33 1 8.2802 -2.8757 -0.0021
34 1 9.4596 -5.0348 -0.0016
35 1 8.1916 -7.1426 -0.0014
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001242490689.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:44:54
Heat of formation + Delta-G solvation = -89.820805 kcal
Electronic energy + Delta-G solvation = -25708.680003 eV
Core-core repulsion = 21448.913961 eV
Total energy + Delta-G solvation = -4259.766042 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.083 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-51.19287 -48.71233 -48.62861 -40.64965 -40.18032 -36.12698 -35.70332 -33.77244
-33.00146 -32.28721 -29.95995 -27.94392 -26.91566 -25.49748 -23.92110 -23.51559
-22.52342 -20.46628 -19.67673 -19.48262 -19.44432 -19.26990 -18.02533 -17.06812
-16.87975 -16.47275 -16.01807 -15.82723 -15.56759 -15.46402 -15.20901 -15.08248
-14.90926 -14.83002 -14.81521 -14.64486 -14.22133 -13.96605 -13.57705 -13.52964
-13.40634 -13.07245 -13.04505 -12.34614 -12.14944 -12.01255 -11.95626 -11.82790
-11.50205 -11.49444 -10.93138 -10.16154 -9.97051 -9.39640 -8.81181 -8.50452
-6.68370 -0.48041 0.16759 0.54828 1.02297 1.40321 1.54459 1.57870
1.69780 1.92621 2.13845 2.67689 2.75974 2.77009 3.06749 3.44806
3.68013 3.78544 3.82218 3.96935 4.07360 4.13015 4.26004 4.42200
4.43715 4.50117 4.67076 4.76427 4.93257 4.98407 5.00145 5.09580
5.29765 5.35030 5.48783 5.71539 5.76175 5.82310 5.92984 6.03218
6.36665 6.61512 7.29643 7.82936 8.14596
Molecular weight = 320.08amu
Principal moments of inertia in cm(-1)
A = 0.014328 B = 0.004131 C = 0.003272
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1953.787965 B = 6776.270717 C = 8555.566511
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.730 5.730
2 C 0.016 3.984
3 Si 0.997 3.003
4 H -0.258 1.258
5 H -0.267 1.267
6 H -0.242 1.242
7 C -0.398 4.398
8 H 0.115 0.885
9 C 0.183 3.817
10 N -0.493 5.493
11 C 0.089 3.911
12 C -0.130 4.130
13 N -0.424 5.424
14 C -0.079 4.079
15 C -0.018 4.018
16 C -0.181 4.181
17 C 0.003 3.997
18 C -0.140 4.140
19 C -0.074 4.074
20 C -0.128 4.128
21 C -0.071 4.071
22 C -0.209 4.209
23 C 0.507 3.493
24 F -0.175 7.175
25 F -0.187 7.187
26 F -0.187 7.187
27 H 0.292 0.708
28 H 0.159 0.841
29 H 0.154 0.846
30 H 0.141 0.859
31 H 0.105 0.895
32 H 0.140 0.860
33 H 0.165 0.835
34 H 0.169 0.831
35 H 0.154 0.846
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.605 -2.901 0.020 15.873
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.349 5.349
2 C -0.210 4.210
3 Si 0.815 3.185
4 H -0.182 1.182
5 H -0.191 1.191
6 H -0.164 1.164
7 C -0.427 4.427
8 H 0.133 0.867
9 C 0.059 3.941
10 N -0.209 5.209
11 C -0.082 4.082
12 C -0.292 4.292
13 N -0.136 5.136
14 C -0.223 4.223
15 C -0.037 4.037
16 C -0.202 4.202
17 C 0.003 3.997
18 C -0.158 4.158
19 C -0.092 4.092
20 C -0.146 4.146
21 C -0.089 4.089
22 C -0.211 4.211
23 C 0.453 3.547
24 F -0.156 7.156
25 F -0.168 7.168
26 F -0.168 7.168
27 H 0.103 0.897
28 H 0.176 0.824
29 H 0.172 0.828
30 H 0.158 0.842
31 H 0.123 0.877
32 H 0.158 0.842
33 H 0.183 0.817
34 H 0.187 0.813
35 H 0.171 0.829
Dipole moment (debyes) X Y Z Total
from point charges 15.313 -2.771 0.022 15.562
hybrid contribution -1.032 -0.151 -0.014 1.044
sum 14.281 -2.922 0.008 14.576
Atomic orbital electron populations
1.70136 1.09521 1.30820 1.24374 1.27368 0.95880 1.05400 0.92358
0.84962 0.79381 0.74137 0.80033 1.18224 1.19140 1.16437 1.20193
0.96248 0.89380 1.36855 0.86720 1.20930 0.89393 0.93248 0.90550
1.69530 1.08229 1.26100 1.17068 1.23963 1.01481 0.89916 0.92841
1.22925 0.90788 0.98801 1.16713 1.67869 1.08795 1.30654 1.06302
1.21768 0.94417 0.89419 1.16698 1.21746 0.90068 0.97892 0.94013
1.21959 0.91793 0.98362 1.08121 1.18859 0.92412 0.92999 0.95450
1.21643 0.95398 0.96989 1.01763 1.21692 0.93186 1.00056 0.94223
1.21605 1.01873 0.90720 1.00361 1.21197 0.90633 1.01389 0.95713
1.20133 0.95806 0.90389 1.14744 1.18457 0.77626 0.85261 0.73340
1.93128 1.67717 1.58505 1.96248 1.93197 1.75162 1.96816 1.51640
1.93199 1.75169 1.96819 1.51627 0.89719 0.82363 0.82840 0.84207
0.87729 0.84200 0.81708 0.81317 0.82857
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.73 -35.72 11.50 21.87 0.25 -35.47 16
2 C 0.02 0.71 5.50 85.34 0.47 1.18 16
3 Si 1.00 32.49 29.56 68.60 2.03 34.52 16
4 H -0.26 -8.13 7.11 99.48 0.71 -7.43 16
5 H -0.27 -8.44 7.11 99.48 0.71 -7.73 16
6 H -0.24 -7.27 7.11 99.48 0.71 -6.56 16
7 C -0.40 -19.36 8.84 23.28 0.21 -19.15 16
8 H 0.12 4.89 6.11 -2.91 -0.02 4.87 16
9 C 0.18 9.79 6.71 41.55 0.28 10.07 16
10 N -0.49 -26.75 8.06 -183.93 -1.48 -28.23 16
11 C 0.09 4.29 11.17 84.99 0.95 5.24 16
12 C -0.13 -6.14 11.17 84.95 0.95 -5.19 16
13 N -0.42 -21.77 9.53 -179.36 -1.71 -23.47 16
14 C -0.08 -4.02 6.90 43.22 0.30 -3.72 16
15 C -0.02 -0.79 8.93 23.67 0.21 -0.58 16
16 C -0.18 -7.33 8.39 23.88 0.20 -7.13 16
17 C 0.00 0.10 5.84 -20.14 -0.12 -0.02 16
18 C -0.14 -3.64 9.42 22.60 0.21 -3.43 16
19 C -0.07 -1.35 10.03 22.23 0.22 -1.13 16
20 C -0.13 -2.12 10.04 22.37 0.22 -1.89 16
21 C -0.07 -1.53 9.42 22.23 0.21 -1.32 16
22 C -0.21 -6.16 5.41 -19.54 -0.11 -6.26 16
23 C 0.51 16.15 2.79 71.24 0.20 16.35 16
24 F -0.17 -4.76 15.98 44.97 0.72 -4.04 16
25 F -0.19 -6.66 16.01 44.97 0.72 -5.94 16
26 F -0.19 -6.66 16.01 44.97 0.72 -5.94 16
27 H 0.29 12.65 8.29 -92.71 -0.77 11.88 16
28 H 0.16 6.35 8.06 -2.91 -0.02 6.33 16
29 H 0.15 6.17 8.06 -2.91 -0.02 6.14 16
30 H 0.14 5.26 4.43 -2.91 -0.01 5.24 16
31 H 0.10 4.71 5.26 -2.91 -0.02 4.70 16
32 H 0.14 3.46 6.17 -2.91 -0.02 3.44 16
33 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16
34 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16
35 H 0.15 2.57 7.15 -2.91 -0.02 2.55 16
Total: -1.00 -65.71 318.17 6.83 -58.88
By element:
Atomic # 1 Polarization: 25.51 SS G_CDS: 1.17 Total: 26.68 kcal
Atomic # 6 Polarization: -21.40 SS G_CDS: 4.41 Total: -16.99 kcal
Atomic # 7 Polarization: -84.23 SS G_CDS: -2.94 Total: -87.17 kcal
Atomic # 9 Polarization: -18.08 SS G_CDS: 2.16 Total: -15.92 kcal
Atomic # 14 Polarization: 32.49 SS G_CDS: 2.03 Total: 34.52 kcal
Total: -65.71 6.83 -58.88 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001242490689.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.943 kcal
(2) G-P(sol) polarization free energy of solvation -65.705 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.648 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.827 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.878 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.821 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds