Wall clock time and date at job start Tue Mar 31 2020 12:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.46844 * 2 1 4 4 C 1.35932 * 117.00032 * 179.97438 * 3 2 1 5 5 C 1.38826 * 119.97704 * 0.02562 * 4 3 2 6 6 C 1.38211 * 120.19921 * 179.97438 * 5 4 3 7 7 C 1.38178 * 120.16527 * 0.02562 * 6 5 4 8 8 Cl 1.73600 * 120.01994 * 179.97438 * 7 6 5 9 9 C 1.39441 * 119.96220 * 359.97438 * 7 6 5 10 10 C 1.48383 * 120.09859 * 179.97438 * 9 7 6 11 11 C 1.39827 * 119.96152 * 130.00163 * 10 9 7 12 12 C 1.38227 * 120.42101 * 179.97438 * 11 10 9 13 13 C 1.38076 * 120.34887 * 0.02562 * 12 11 10 14 14 F 1.35094 * 120.04464 * 179.97438 * 13 12 11 15 15 C 1.41036 * 119.91633 * 359.97438 * 13 12 11 16 16 C 1.41319 * 120.20602 * 179.97438 * 15 13 12 17 17 H 1.07992 * 120.00316 * 334.40541 * 16 15 13 18 18 C 1.39918 * 119.99656 * 154.39983 * 16 15 13 19 19 N 1.30854 * 120.00220 * 343.19934 * 18 16 15 20 20 Si 1.86802 * 119.99764 * 163.19467 * 18 16 15 21 21 H 1.48510 * 109.46808 * 90.00418 * 20 18 16 22 22 H 1.48499 * 109.47323 * 209.99734 * 20 18 16 23 23 H 1.48501 * 109.47402 * 330.00459 * 20 18 16 24 24 C 1.38667 * 119.96801 * 309.72780 * 10 9 7 25 25 C 1.38481 * 119.98279 * 179.72099 * 4 3 2 26 26 H 1.08996 * 109.47109 * 59.99878 * 1 2 3 27 27 H 1.08998 * 109.47172 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47299 * 299.99991 * 1 2 3 29 29 H 1.08999 * 109.46858 * 240.00002 * 2 1 3 30 30 H 1.09005 * 109.47048 * 119.99909 * 2 1 3 31 31 H 1.07995 * 119.90497 * 0.02562 * 5 4 3 32 32 H 1.07997 * 119.91507 * 179.97438 * 6 5 4 33 33 H 1.07997 * 119.78885 * 359.95845 * 11 10 9 34 34 H 1.08006 * 119.83170 * 180.02562 * 12 11 10 35 35 H 0.97005 * 119.99922 * 179.97438 * 19 18 16 36 36 H 1.08004 * 120.17190 * 0.02562 * 24 10 9 37 37 H 1.08001 * 120.08326 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3538 1.5255 0.0005 5 6 4.1991 0.4242 0.0005 6 6 5.5700 0.6001 0.0005 7 6 6.1067 1.8734 0.0011 8 17 7.8291 2.0899 0.0018 9 6 5.2640 2.9843 0.0011 10 6 5.8371 4.3530 0.0023 11 6 5.3892 5.2984 -0.9255 12 6 5.9160 6.5763 -0.9325 13 6 6.8917 6.9337 -0.0232 14 9 7.4027 8.1842 -0.0359 15 6 7.3541 5.9916 0.9190 16 6 8.3528 6.3506 1.8522 17 1 9.0470 7.1450 1.6214 18 6 8.4421 5.6769 3.0752 19 7 7.4343 4.9598 3.5023 20 14 10.0000 5.8011 4.0984 21 1 9.8924 6.9562 5.0257 22 1 10.1786 4.5524 4.8819 23 1 11.1675 5.9938 3.2011 24 6 6.8121 4.6949 0.9271 25 6 3.8827 2.8053 -0.0053 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.7844 -0.5729 -0.0003 32 1 6.2233 -0.2599 0.0009 33 1 4.6269 5.0284 -1.6412 34 1 5.5628 7.2991 -1.6531 35 1 7.4964 4.4924 4.3501 36 1 7.1564 3.9671 1.6470 37 1 3.2257 3.6625 -0.0098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243569503.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:11 Heat of formation + Delta-G solvation = -59.462680 kcal Electronic energy + Delta-G solvation = -23580.504273 eV Core-core repulsion = 19841.558588 eV Total energy + Delta-G solvation = -3738.945685 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.072 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -47.24650 -40.05726 -38.14895 -36.78623 -35.68940 -33.86390 -32.03941 -31.68252 -29.82470 -29.30709 -27.78598 -25.39576 -24.04436 -22.49383 -21.94765 -21.16148 -20.02366 -18.09730 -17.01518 -16.28392 -16.16948 -16.03107 -15.94334 -15.19362 -14.71636 -14.35415 -14.02019 -13.82227 -13.51602 -13.44565 -13.01981 -12.83916 -12.77955 -12.42757 -12.17317 -11.97870 -11.79492 -11.67100 -11.39032 -11.24463 -11.13972 -10.98678 -10.74382 -10.47056 -10.41863 -10.32887 -9.84251 -9.55808 -9.29546 -8.75218 -7.90526 -7.60635 -7.17600 -6.84389 -4.44318 1.34552 1.51117 2.60080 2.69073 2.75742 3.04737 3.07201 3.13518 3.20662 3.88547 3.89402 4.48463 4.74187 4.75246 4.92292 4.99760 5.06374 5.26249 5.35381 5.45179 5.58792 5.59576 5.73983 5.83179 5.88505 6.06016 6.15868 6.19427 6.39404 6.45569 6.58799 6.77324 6.87501 7.05169 7.13540 7.40883 7.46191 7.52624 7.80766 7.92658 8.02395 8.44674 8.69423 8.76582 10.08493 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.014368 B = 0.004083 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.284166 B = 6856.605577 C = 7587.093027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.315 6.315 4 C 0.131 3.869 5 C -0.214 4.214 6 C -0.073 4.073 7 C -0.066 4.066 8 Cl -0.058 7.058 9 C 0.042 3.958 10 C -0.068 4.068 11 C -0.195 4.195 12 C -0.125 4.125 13 C -0.023 4.023 14 F -0.163 7.163 15 C 0.082 3.918 16 C -0.451 4.451 17 H 0.083 0.917 18 C 0.077 3.923 19 N -0.787 5.787 20 Si 0.909 3.091 21 H -0.268 1.268 22 H -0.274 1.274 23 H -0.259 1.259 24 C -0.101 4.101 25 C -0.135 4.135 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.284 0.716 36 H 0.137 0.863 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.698 -11.801 -4.086 14.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.229 6.229 4 C 0.086 3.914 5 C -0.233 4.233 6 C -0.092 4.092 7 C -0.093 4.093 8 Cl -0.029 7.029 9 C 0.041 3.959 10 C -0.069 4.069 11 C -0.214 4.214 12 C -0.144 4.144 13 C -0.043 4.043 14 F -0.142 7.142 15 C 0.078 3.922 16 C -0.480 4.480 17 H 0.101 0.899 18 C -0.141 4.141 19 N -0.412 5.412 20 Si 0.733 3.267 21 H -0.193 1.193 22 H -0.199 1.199 23 H -0.183 1.183 24 C -0.120 4.120 25 C -0.154 4.154 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.095 0.905 36 H 0.154 0.846 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.760 -11.740 -3.868 14.594 hybrid contribution 0.877 -0.030 0.557 1.039 sum -6.883 -11.770 -3.311 14.031 Atomic orbital electron populations 1.21771 0.92910 1.02633 1.03591 1.22752 0.95740 0.82330 1.01310 1.86083 1.19116 1.28911 1.88809 1.18877 0.82067 0.93939 0.96535 1.21019 0.93421 0.97918 1.10948 1.20672 0.94506 0.95460 0.98564 1.20912 0.85583 0.93875 1.08944 1.98369 1.10139 1.97515 1.96921 1.18681 0.91037 0.92931 0.93275 1.18326 0.99538 0.90236 0.98798 1.20125 1.05273 0.93216 1.02800 1.20376 0.98251 0.96686 0.99086 1.17953 1.01504 0.80056 1.04810 1.91271 1.86824 1.39538 1.96554 1.17530 0.92741 0.90468 0.91413 1.19483 1.12790 1.16573 0.99160 0.89865 1.25882 0.97122 0.93176 0.97962 1.69793 1.29141 1.22951 1.19311 0.86286 0.82094 0.78694 0.79661 1.19284 1.19877 1.18278 1.21374 0.96445 0.95946 0.98256 1.20445 0.93844 0.94957 1.06163 0.91530 0.90557 0.91477 0.92140 0.92086 0.85310 0.85139 0.88184 0.87876 0.90525 0.84565 0.84360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.76 16 2 C 0.05 0.52 5.46 37.16 0.20 0.72 16 3 O -0.32 -4.35 10.13 -19.53 -0.20 -4.55 16 4 C 0.13 2.01 6.68 -39.27 -0.26 1.75 16 5 C -0.21 -2.92 9.03 -39.37 -0.36 -3.28 16 6 C -0.07 -1.09 9.81 -39.61 -0.39 -1.48 16 7 C -0.07 -1.20 6.28 -39.16 -0.25 -1.45 16 8 Cl -0.06 -1.10 25.98 -51.86 -1.35 -2.44 16 9 C 0.04 0.82 5.47 -104.88 -0.57 0.24 16 10 C -0.07 -1.54 5.10 -104.97 -0.54 -2.07 16 11 C -0.19 -4.20 9.50 -38.99 -0.37 -4.57 16 12 C -0.12 -2.82 9.99 -39.64 -0.40 -3.22 16 13 C -0.02 -0.58 7.31 -38.58 -0.28 -0.87 16 14 F -0.16 -4.12 16.71 2.25 0.04 -4.09 16 15 C 0.08 2.17 5.57 -106.80 -0.59 1.58 16 16 C -0.45 -12.04 8.77 -37.78 -0.33 -12.37 16 17 H 0.08 2.20 7.74 -52.49 -0.41 1.79 16 18 C 0.08 1.92 5.15 -17.34 -0.09 1.83 16 19 N -0.79 -19.94 10.95 55.55 0.61 -19.33 16 20 Si 0.91 18.67 29.59 -169.99 -5.03 13.64 16 21 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 23 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 24 C -0.10 -2.52 6.80 -38.56 -0.26 -2.78 16 25 C -0.14 -2.38 9.43 -39.10 -0.37 -2.75 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 30 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 31 H 0.13 1.34 6.28 -52.49 -0.33 1.01 16 32 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.10 1.90 8.03 -52.49 -0.42 1.48 16 34 H 0.10 2.05 8.06 -52.48 -0.42 1.62 16 35 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 36 H 0.14 3.50 5.29 -52.48 -0.28 3.22 16 37 H 0.14 2.38 8.03 -52.49 -0.42 1.96 16 LS Contribution 334.84 15.07 5.05 5.05 Total: -1.00 -28.04 334.84 -9.25 -37.29 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -3.90 Total: 3.90 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: -4.47 Total: -29.47 kcal Atomic # 7 Polarization: -19.94 SS G_CDS: 0.61 Total: -19.33 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -0.20 Total: -4.55 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.04 Total: -4.09 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.35 Total: -2.44 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.04 -9.25 -37.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243569503.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.168 kcal (2) G-P(sol) polarization free energy of solvation -28.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds