Wall clock time and date at job start Tue Mar 31 2020 12:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.46895 * 2 1 4 4 C 1.35929 * 116.99791 * 180.02562 * 3 2 1 5 5 C 1.38394 * 119.98840 * 0.03016 * 4 3 2 6 6 C 1.39528 * 119.81249 * 179.97438 * 5 4 3 7 7 C 1.47989 * 120.10472 * 179.97438 * 6 5 4 8 8 C 1.40029 * 119.86045 * 180.02562 * 7 6 5 9 9 C 1.36194 * 120.18147 * 180.02562 * 8 7 6 10 10 C 1.40935 * 119.90287 * 359.97438 * 9 8 7 11 11 C 1.40943 * 120.13663 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00072 * 204.80164 * 11 10 9 13 13 C 1.39996 * 120.00138 * 24.80327 * 11 10 9 14 14 N 1.30818 * 120.00028 * 17.85448 * 13 11 10 15 15 Si 1.86801 * 119.99903 * 197.86028 * 13 11 10 16 16 H 1.48499 * 109.47178 * 89.99942 * 15 13 11 17 17 H 1.48506 * 109.46625 * 209.99635 * 15 13 11 18 18 H 1.48506 * 109.46999 * 329.99310 * 15 13 11 19 19 C 1.41182 * 119.73160 * 0.02562 * 10 9 8 20 20 F 1.35099 * 120.09589 * 179.97438 * 19 10 9 21 21 C 1.36567 * 119.80794 * 359.72232 * 19 10 9 22 22 C 1.39645 * 119.79225 * 359.97438 * 6 5 4 23 23 C 1.37933 * 119.96953 * 0.02562 * 22 6 5 24 24 C 1.38418 * 120.19043 * 0.02562 * 23 22 6 25 25 Cl 1.73599 * 119.89617 * 179.97438 * 24 23 22 26 26 H 1.08996 * 109.47409 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47134 * 299.99405 * 1 2 3 28 28 H 1.09002 * 109.47412 * 59.99049 * 1 2 3 29 29 H 1.08999 * 109.46645 * 240.00908 * 2 1 3 30 30 H 1.08998 * 109.47367 * 120.00432 * 2 1 3 31 31 H 1.07999 * 120.09479 * 359.94971 * 5 4 3 32 32 H 1.07997 * 119.90964 * 359.97438 * 8 7 6 33 33 H 1.08005 * 120.04699 * 179.97438 * 9 8 7 34 34 H 0.97000 * 120.00363 * 180.02562 * 14 13 11 35 35 H 1.08006 * 119.95232 * 180.29244 * 21 19 10 36 36 H 1.07994 * 120.01217 * 180.02562 * 22 6 5 37 37 H 1.07997 * 119.90246 * 180.28360 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3539 1.5254 -0.0005 5 6 4.1967 0.4277 -0.0017 6 6 5.5794 0.6148 -0.0028 7 6 6.4866 -0.5544 -0.0034 8 6 7.8734 -0.3608 -0.0040 9 6 8.7144 -1.4321 -0.0051 10 6 8.1872 -2.7391 -0.0052 11 6 9.0529 -3.8513 -0.0058 12 1 8.7145 -4.7989 -0.3983 13 6 10.3516 -3.7278 0.5022 14 7 10.6562 -2.7222 1.2815 15 14 11.6494 -4.9990 0.0673 16 1 12.3594 -4.5791 -1.1675 17 1 12.6228 -5.1142 1.1830 18 1 10.9979 -6.3142 -0.1591 19 6 6.7883 -2.9299 -0.0047 20 9 6.2750 -4.1796 -0.0052 21 6 5.9556 -1.8475 0.0017 22 6 6.1045 1.9087 -0.0033 23 6 5.2563 2.9965 -0.0021 24 6 3.8848 2.8098 0.0001 25 17 2.8244 4.1843 0.0022 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.7853 -0.5709 -0.0013 32 1 8.2773 0.6408 -0.0044 33 1 9.7837 -1.2802 -0.0060 34 1 11.5561 -2.6364 1.6332 35 1 4.8851 -1.9907 0.0069 36 1 7.1741 2.0576 -0.0045 37 1 5.6636 3.9967 -0.0071 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243570740.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:49 Heat of formation + Delta-G solvation = -71.684021 kcal Electronic energy + Delta-G solvation = -23240.233715 eV Core-core repulsion = 19500.758072 eV Total energy + Delta-G solvation = -3739.475643 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.072 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.26982 -41.23742 -39.61070 -38.31414 -37.27548 -35.82715 -33.20448 -32.59272 -31.53137 -30.69098 -30.03207 -27.12124 -25.15069 -23.95941 -23.39773 -22.03834 -21.84607 -19.55474 -19.24452 -17.68932 -17.55851 -17.16052 -17.11434 -16.84400 -16.20931 -16.06297 -15.95236 -15.39711 -14.77555 -14.68123 -14.55412 -14.36900 -13.80977 -13.75056 -13.50412 -13.37944 -13.28514 -13.08420 -12.93925 -12.77959 -12.61229 -12.34293 -12.11767 -12.00219 -11.82401 -11.67884 -11.58235 -11.46702 -11.17172 -10.13693 -9.49044 -9.42986 -8.92043 -8.74171 -6.46159 -0.19240 0.39940 0.86095 1.00703 1.26602 1.36733 1.49834 1.50360 2.13991 2.16799 2.44370 2.86846 3.51817 3.71784 3.75348 3.95498 4.02856 4.13048 4.17716 4.24926 4.33067 4.37615 4.48254 4.53015 4.81399 4.87370 4.91307 4.93246 5.01550 5.04906 5.13526 5.20588 5.24071 5.47770 5.53043 5.62152 5.78628 5.94459 6.02677 6.09223 6.31655 6.44725 6.61859 6.77315 8.10355 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.020812 B = 0.003080 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.082346 B = 9087.854921 C =10339.611521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.042 3.958 3 O -0.317 6.317 4 C 0.142 3.858 5 C -0.224 4.224 6 C 0.040 3.960 7 C -0.181 4.181 8 C -0.074 4.074 9 C -0.171 4.171 10 C 0.067 3.933 11 C -0.473 4.473 12 H 0.077 0.923 13 C 0.040 3.960 14 N -0.796 5.796 15 Si 0.988 3.012 16 H -0.255 1.255 17 H -0.261 1.261 18 H -0.262 1.262 19 C -0.064 4.064 20 F -0.170 7.170 21 C -0.091 4.091 22 C -0.163 4.163 23 C -0.057 4.057 24 C -0.107 4.107 25 Cl -0.066 7.066 26 H 0.098 0.902 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.138 0.862 32 H 0.131 0.869 33 H 0.120 0.880 34 H 0.299 0.701 35 H 0.124 0.876 36 H 0.146 0.854 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.147 7.953 -1.728 12.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.033 4.033 3 O -0.231 6.231 4 C 0.095 3.905 5 C -0.242 4.242 6 C 0.040 3.960 7 C -0.183 4.183 8 C -0.092 4.092 9 C -0.191 4.191 10 C 0.064 3.936 11 C -0.500 4.500 12 H 0.095 0.905 13 C -0.179 4.179 14 N -0.419 5.419 15 Si 0.807 3.193 16 H -0.179 1.179 17 H -0.185 1.185 18 H -0.186 1.186 19 C -0.083 4.083 20 F -0.149 7.149 21 C -0.110 4.110 22 C -0.181 4.181 23 C -0.075 4.075 24 C -0.134 4.134 25 Cl -0.037 7.037 26 H 0.117 0.883 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.138 0.862 34 H 0.110 0.890 35 H 0.142 0.858 36 H 0.164 0.836 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.245 8.263 -1.561 12.497 hybrid contribution 0.440 -1.140 0.015 1.222 sum -8.805 7.123 -1.546 11.431 Atomic orbital electron populations 1.21774 0.90738 1.04147 1.03439 1.23083 0.97388 0.80825 1.01965 1.86105 1.17728 1.30928 1.88308 1.18580 0.83276 0.92328 0.96271 1.21278 0.93234 0.98147 1.11581 1.18743 0.91732 0.92902 0.92620 1.18038 0.92631 0.90680 1.16919 1.20875 0.92154 0.98670 0.97538 1.20860 0.99733 0.90994 1.07485 1.18096 0.90110 0.95281 0.90114 1.19862 0.97699 0.97581 1.34831 0.90527 1.26824 1.00760 0.98740 0.91605 1.69800 1.22871 1.29108 1.20145 0.85107 0.76639 0.78014 0.79531 1.17929 1.18485 1.18616 1.17698 0.92554 0.78739 1.19355 1.91251 1.87359 1.40685 1.95598 1.20548 0.98522 0.91496 1.00450 1.21271 1.00944 0.90488 1.05428 1.20996 0.89430 1.00661 0.96407 1.20269 0.91569 0.85826 1.15737 1.98318 1.66113 1.41911 1.97385 0.88333 0.91542 0.91488 0.91634 0.91742 0.84479 0.85109 0.86235 0.88952 0.85837 0.83644 0.82026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 10.28 71.98 0.74 -1.57 16 2 C 0.04 0.92 5.46 71.98 0.39 1.31 16 3 O -0.32 -8.81 9.58 -92.75 -0.89 -9.70 16 4 C 0.14 4.30 6.68 22.49 0.15 4.45 16 5 C -0.22 -7.18 8.41 22.62 0.19 -6.99 16 6 C 0.04 1.40 5.88 -20.04 -0.12 1.28 16 7 C -0.18 -7.40 5.90 -19.88 -0.12 -7.52 16 8 C -0.07 -3.10 9.35 22.23 0.21 -2.89 16 9 C -0.17 -8.25 8.62 22.45 0.19 -8.05 16 10 C 0.07 3.51 5.58 -21.23 -0.12 3.39 16 11 C -0.47 -24.56 8.76 23.36 0.20 -24.36 16 12 H 0.08 3.99 7.73 -2.91 -0.02 3.97 16 13 C 0.04 1.86 5.13 85.27 0.44 2.30 16 14 N -0.80 -37.80 10.96 21.84 0.24 -37.56 16 15 Si 0.99 35.29 29.60 68.60 2.03 37.32 16 16 H -0.26 -8.72 7.11 99.48 0.71 -8.02 16 17 H -0.26 -8.69 7.11 99.48 0.71 -7.99 16 18 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 19 C -0.06 -3.16 7.26 22.60 0.16 -3.00 16 20 F -0.17 -8.46 16.70 44.97 0.75 -7.71 16 21 C -0.09 -3.97 9.33 22.25 0.21 -3.76 16 22 C -0.16 -4.83 9.42 22.54 0.21 -4.62 16 23 C -0.06 -1.48 9.81 22.24 0.22 -1.26 16 24 C -0.11 -3.05 6.34 22.49 0.14 -2.91 16 25 Cl -0.07 -1.69 28.49 -2.72 -0.08 -1.77 16 26 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 1.39 7.66 -2.39 -0.02 1.37 16 30 H 0.06 1.38 7.66 -2.39 -0.02 1.37 16 31 H 0.14 4.16 4.41 -2.91 -0.01 4.15 16 32 H 0.13 4.57 6.17 -2.91 -0.02 4.55 16 33 H 0.12 5.84 6.17 -2.91 -0.02 5.83 16 34 H 0.30 12.55 8.30 -92.71 -0.77 11.78 16 35 H 0.12 4.69 6.17 -2.91 -0.02 4.67 16 36 H 0.15 3.85 6.17 -2.91 -0.02 3.83 16 37 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -56.70 331.76 6.29 -50.41 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 1.13 Total: 23.20 kcal Atomic # 6 Polarization: -57.30 SS G_CDS: 3.11 Total: -54.19 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.24 Total: -37.56 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.89 Total: -9.70 kcal Atomic # 9 Polarization: -8.46 SS G_CDS: 0.75 Total: -7.71 kcal Atomic # 14 Polarization: 35.29 SS G_CDS: 2.03 Total: 37.32 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -0.08 Total: -1.77 kcal Total: -56.70 6.29 -50.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243570740.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.270 kcal (2) G-P(sol) polarization free energy of solvation -56.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds